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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0647300 |
| Transcript ID | LotjaGi1g1v0647300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat-shock protein, putative; TAIR: AT4G10250.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P19244|HSP41_PEA 22.7 kDa class IV heat shock protein; TrEMBL-Plants: tr|A0A199UBI8|A0A199UBI8_MANES Uncharacterized protein; Found in the gene: LotjaGi1g1v0647300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120478898..120480146) extracted from Lotus japonicus Gifu genome v1.2.
GTCATGACTACCAACTATAATGATATTAGCTACGAAAAAAAATCTGAAAAATTAAAAAAAAAAAAGCATGTTCGTGCAGA GGTGTGATGAACACATTAGAAAATGTGGATCTTACTCCGCCATGTGTCAGGTTCTTTTTTATCATCCATAACTTTCTTGA ATATTCTTGAACTCTCAACTTTCTATTCTAGACAGTCCCAGATATCTATCTCCCAGTCACTCTTTTACCCGGAAAATCAT CAAAGAACTATCCAGAAAGCCAGCATGCATCTCCTATATATATCAACCCAACATATGCTGTTTCCTCCCAACATATATAC ATAGAACAAAACAAACAATTTTATCATTGAGATTCCACTGTAACAACCTACTATATCATATCAATGGCTTTCACACTCAA ACTTCCAATGTCTTCTTCTCTGTTCCTAGTGGGAGTAGTGTTGTTCTTGACCATAGGCAGCATCAGAACCCATGCATTGA TGCCATACTCAAGGACCTCCCTCTTGGACATGATGTTCCCTTCTGATGACCCTTTCAGAATCCTTGAACAAACACCATTC AACATTCCTAAAGGCCTTGAGACCCTTGCTCTGGCACGTGCAGACTGGAAGGAAACCTCCACCGCACACGTGATCTCTTT AGACCTTCCAGGGTTGAAGAAAGATGACGTGAAGATTGAGGTGGAGGACAACCGTGTGCTGCGGATAAGCGGCGAGAGGA AGACGGAGGAGGAGGAGGGTAATGAGAAGTGGCACAGGGCGGAGAGGGTGAATGGAAAGTTCTGGAGGCAGTTCAGGTTG CCGGGGAATGTGGACTTGGATGGTGTTAAGGCGAGTTTGGAAGATGGGGTGTTGAGGATCACGGTGGCTAAGGTGGGTGA GGATAAGAAGAGGCAGGCTAAGGTTATTGATATTGCTGCTCACCAGGGAAATGTCCATGGGGAGGATATCAAAGCTACCA AGGCTGAAATGTGATGTCATGTGTTGACAACAAGATGTTGTTGTTGCTTCTTTCCTTTTTGTTCATATGCTGGGTTGATG AGTTGCATATAGTGTGATGTTGATGTTGGACTAATAAAGTGAGCTTGTACCTCAATTTTATGAGTTAAATTTGTTTGTTG TGCTTGTGTATCTATAATATAGAGGATGCTATGAACAATTTTTCAGAGTAAAATTGTCTTTTGTTCCTGAATTTTTCTGG TTCTTTCCAGACAATGAAAACTTATTGATAGTCATTTTCAGAAAAGGGG
CDS sequence (LotjaGi1g1v0647300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCACACTCAAACTTCCAATGTCTTCTTCTCTGTTCCTAGTGGGAGTAGTGTTGTTCTTGACCATAGGCAGCAT CAGAACCCATGCATTGATGCCATACTCAAGGACCTCCCTCTTGGACATGATGTTCCCTTCTGATGACCCTTTCAGAATCC TTGAACAAACACCATTCAACATTCCTAAAGGCCTTGAGACCCTTGCTCTGGCACGTGCAGACTGGAAGGAAACCTCCACC GCACACGTGATCTCTTTAGACCTTCCAGGGTTGAAGAAAGATGACGTGAAGATTGAGGTGGAGGACAACCGTGTGCTGCG GATAAGCGGCGAGAGGAAGACGGAGGAGGAGGAGGGTAATGAGAAGTGGCACAGGGCGGAGAGGGTGAATGGAAAGTTCT GGAGGCAGTTCAGGTTGCCGGGGAATGTGGACTTGGATGGTGTTAAGGCGAGTTTGGAAGATGGGGTGTTGAGGATCACG GTGGCTAAGGTGGGTGAGGATAAGAAGAGGCAGGCTAAGGTTATTGATATTGCTGCTCACCAGGGAAATGTCCATGGGGA GGATATCAAAGCTACCAAGGCTGAAATGTGA
Protein sequence (LotjaGi1g1v0647300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFTLKLPMSSSLFLVGVVLFLTIGSIRTHALMPYSRTSLLDMMFPSDDPFRILEQTPFNIPKGLETLALARADWKETST AHVISLDLPGLKKDDVKIEVEDNRVLRISGERKTEEEEGNEKWHRAERVNGKFWRQFRLPGNVDLDGVKASLEDGVLRIT VAKVGEDKKRQAKVIDIAAHQGNVHGEDIKATKAEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 11 | 182 | 172 | 8.0E-82 | ||
| PANTHER | 11 | 182 | 172 | 8.0E-82 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 31 | 7 | - | – | |
| Phobius | 32 | 196 | 165 | - | – | |
| Gene3D | 36 | 177 | 142 | 5.3E-39 | ||
| SUPERFAMILY | 38 | 174 | 137 | 2.54E-39 | ||
| ProSiteProfiles | 64 | 180 | 117 | 28.615 | ||
| CDD | 72 | 163 | 92 | 1.12776E-49 | – | |
| Pfam | 74 | 177 | 104 | 4.4E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0647300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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