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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0650400 |
| Transcript ID | LotjaGi1g1v0650400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT1G08810.1 myb domain protein 60; Swiss-Prot: sp|P81392|MYB06_ANTMA Myb-related protein 306; TrEMBL-Plants: tr|A0A151TAB8|A0A151TAB8_CAJCA Myb-related protein 306 family; Found in the gene: LotjaGi1g1v0650400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120888142..120889982) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGAAAGCTCTCTCTCAAGTTTAGCCTAAAAGAAAGAGACTGAGGAGGAGTGAGAGTTTTTGAGGCAGAGAAGGTGAG AGTGGAAAGAATCCATGGGAAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAGGAAGAT ATCATTCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTTCCTACTAATACTGGTAATTCAATTCA CCTATTAATTTCCTTATCTATATAATCATTACTTCTATTTATGATGATTTCTTCTGATCTATATCAATTATGAAAAATTG AACCAAGTGATGATGATTCAAATTAACCTTTCTTGTATAAAAAAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGA TGGACAAATTACCTGAGGCCAGGAATTAAGAGAGGGAACTTCACTCCTCATGAAGAAGGGATGATAATTCACTTGCAAGC TCTACTGGGTAACAAGTAATTAATCTTCACATATCCTACCTCTCTTTAAATTAATTTGCTCAACAAAAATATAAAAATCA CCATCTTAATTCATTACCATTTCTTCCCAACCAATCTGTTATGAAATCAAATTTTTTCAATGATCTGCTGGTTTCGAACC GAGGACTTGTTGGGTGGGAGAAATTCTCCAAAACAACAAACCGCTCAGGAAACCATTTTACAAAATCAATTTTAATTTGA TTAAAAATTAAATCAACTACTACTTCTAATTTATTTATTTATTTATTATTTTAGCATGTAAATGAAAATGACATGTCTGA ATTGGTGAAGATGATGTTATTAATTGTTGAGCAGATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGAC ATAAAGAATTATTGGAACACACATCTTAAGAAGAAGCTCAAGAAATTCCAATCGTCCATAGAACCAGACTCAACGAACTA CCTACCAAGGAGCTTCAGTGACAGAAGCTTAGATATCAGCAGCAGCAGCAATATTAATAACAACCATGCCTCATCAATGA CTCAAACTTCTCAGTCCTCCACCACATATGCATCAAGCACTGAGAACATTTCAAGGCTCTTAGAAGGTTGGATGAGATCT TCTCCATCAAAAAAGCCACAACTCAAAGGAACAAGCACAACAACCAGAGATCATGAAGAAGAAAAGGAAGAACTTCAAGG AAATGAAAATGATCATAAGCTGAAGCAAGACATGATGTCACATGAAGAGTTTGATTCGATTCTGTCATTTGAGAATCTGA ACAATAATGCTGCTTGGGACAAGTCAACCTGTGATTCCATGCCTGAAAAGATGAGTACTTTTGAAGCTGCTTCTGTTTCT GACAAGAATAACAACAGGCAAAAACATCATGAGATCAATGTTGTTAACAGTGCTCCTCCTCCATTGTCATATCTTGAGAA GTGGCTATTGGATGAGAATGTTGGTCAAGTGGAGGAGATGATGGAAATGTCTCCAATATTCTGACACCAATCCTGAAAAG TTTGGGATATCATATGATGATTGAAATCATAATAAGTCAGAAGAAAGAAGAATTAAAGGAAGTTCTTTTGATCTGACTAG GGTTTAATCCATTTACATGGATGGAGGGAGGCTCCAACAAGCTAGGAGGATCTCTTTCAACAACTTGTAACTGAAGTTTA TGAATTGATTAATGGTTTAATTATTTTCAAGTACTTAATTAGCTTAGTGCATGATGCTCTTCTCCTTGTAGAAAACTACA GATGTTAACTTGAGCAAAAGTAATAAATAGAATTAATAACAGTTATATCCAAACATTATTTGACAAAATTTTATTTTTTT C
CDS sequence (LotjaGi1g1v0650400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATTCACTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGA CATAAAGAATTATTGGAACACACATCTTAAGAAGAAGCTCAAGAAATTCCAATCGTCCATAGAACCAGACTCAACGAACT ACCTACCAAGGAGCTTCAGTGACAGAAGCTTAGATATCAGCAGCAGCAGCAATATTAATAACAACCATGCCTCATCAATG ACTCAAACTTCTCAGTCCTCCACCACATATGCATCAAGCACTGAGAACATTTCAAGGCTCTTAGAAGGTTGGATGAGATC TTCTCCATCAAAAAAGCCACAACTCAAAGGAACAAGCACAACAACCAGAGATCATGAAGAAGAAAAGGAAGAACTTCAAG GAAATGAAAATGATCATAAGCTGAAGCAAGACATGATGTCACATGAAGAGTTTGATTCGATTCTGTCATTTGAGAATCTG AACAATAATGCTGCTTGGGACAAGTCAACCTGTGATTCCATGCCTGAAAAGATGAGTACTTTTGAAGCTGCTTCTGTTTC TGACAAGAATAACAACAGGCAAAAACATCATGAGATCAATGTTGTTAACAGTGCTCCTCCTCCATTGTCATATCTTGAGA AGTGGCTATTGGATGAGAATGTTGGTCAAGTGGAGGAGATGATGGAAATGTCTCCAATATTCTGA
Protein sequence (LotjaGi1g1v0650400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSSIEPDSTNYLPRSFSDRSLDISSSSNINNNHASSM TQTSQSSTTYASSTENISRLLEGWMRSSPSKKPQLKGTSTTTRDHEEEKEELQGNENDHKLKQDMMSHEEFDSILSFENL NNNAAWDKSTCDSMPEKMSTFEAASVSDKNNNRQKHHEINVVNSAPPPLSYLEKWLLDENVGQVEEMMEMSPIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 40 | 40 | 19.909 | ||
| PANTHER | 1 | 188 | 188 | 4.3E-59 | – | |
| PANTHER | 1 | 188 | 188 | 4.3E-59 | ||
| Gene3D | 1 | 55 | 55 | 8.4E-17 | – | |
| SMART | 1 | 38 | 38 | 0.0057 | ||
| CDD | 1 | 36 | 36 | 9.56855E-7 | ||
| SUPERFAMILY | 2 | 42 | 41 | 5.23E-10 | ||
| Pfam | 3 | 36 | 34 | 3.0E-9 | ||
| MobiDBLite | 66 | 92 | 27 | - | – | |
| MobiDBLite | 104 | 138 | 35 | - | – | |
| MobiDBLite | 118 | 138 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0650400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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