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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0650400 |
| Transcript ID | LotjaGi1g1v0650400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT1G08810.1 myb domain protein 60; Swiss-Prot: sp|P81392|MYB06_ANTMA Myb-related protein 306; TrEMBL-Plants: tr|A0A151TAB8|A0A151TAB8_CAJCA Myb-related protein 306 family; Found in the gene: LotjaGi1g1v0650400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120888142..120889982) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGAAAGCTCTCTCTCAAGTTTAGCCTAAAAGAAAGAGACTGAGGAGGAGTGAGAGTTTTTGAGGCAGAGAAGGTGAG AGTGGAAAGAATCCATGGGAAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAGGAAGAT ATCATTCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTTCCTACTAATACTGGTAATTCAATTCA CCTATTAATTTCCTTATCTATATAATCATTACTTCTATTTATGATGATTTCTTCTGATCTATATCAATTATGAAAAATTG AACCAAGTGATGATGATTCAAATTAACCTTTCTTGTATAAAAAAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGA TGGACAAATTACCTGAGGCCAGGAATTAAGAGAGGGAACTTCACTCCTCATGAAGAAGGGATGATAATTCACTTGCAAGC TCTACTGGGTAACAAGTAATTAATCTTCACATATCCTACCTCTCTTTAAATTAATTTGCTCAACAAAAATATAAAAATCA CCATCTTAATTCATTACCATTTCTTCCCAACCAATCTGTTATGAAATCAAATTTTTTCAATGATCTGCTGGTTTCGAACC GAGGACTTGTTGGGTGGGAGAAATTCTCCAAAACAACAAACCGCTCAGGAAACCATTTTACAAAATCAATTTTAATTTGA TTAAAAATTAAATCAACTACTACTTCTAATTTATTTATTTATTTATTATTTTAGCATGTAAATGAAAATGACATGTCTGA ATTGGTGAAGATGATGTTATTAATTGTTGAGCAGATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGAC ATAAAGAATTATTGGAACACACATCTTAAGAAGAAGCTCAAGAAATTCCAATCGTCCATAGAACCAGACTCAACGAACTA CCTACCAAGGAGCTTCAGTGACAGAAGCTTAGATATCAGCAGCAGCAGCAATATTAATAACAACCATGCCTCATCAATGA CTCAAACTTCTCAGTCCTCCACCACATATGCATCAAGCACTGAGAACATTTCAAGGCTCTTAGAAGGTTGGATGAGATCT TCTCCATCAAAAAAGCCACAACTCAAAGGAACAAGCACAACAACCAGAGATCATGAAGAAGAAAAGGAAGAACTTCAAGG AAATGAAAATGATCATAAGCTGAAGCAAGACATGATGTCACATGAAGAGTTTGATTCGATTCTGTCATTTGAGAATCTGA ACAATAATGCTGCTTGGGACAAGTCAACCTGTGATTCCATGCCTGAAAAGATGAGTACTTTTGAAGCTGCTTCTGTTTCT GACAAGAATAACAACAGGCAAAAACATCATGAGATCAATGTTGTTAACAGTGCTCCTCCTCCATTGTCATATCTTGAGAA GTGGCTATTGGATGAGAATGTTGGTCAAGTGGAGGAGATGATGGAAATGTCTCCAATATTCTGACACCAATCCTGAAAAG TTTGGGATATCATATGATGATTGAAATCATAATAAGTCAGAAGAAAGAAGAATTAAAGGAAGTTCTTTTGATCTGACTAG GGTTTAATCCATTTACATGGATGGAGGGAGGCTCCAACAAGCTAGGAGGATCTCTTTCAACAACTTGTAACTGAAGTTTA TGAATTGATTAATGGTTTAATTATTTTCAAGTACTTAATTAGCTTAGTGCATGATGCTCTTCTCCTTGTAGAAAACTACA GATGTTAACTTGAGCAAAAGTAATAAATAGAATTAATAACAGTTATATCCAAACATTATTTGACAAAATTTTATTTTTTT C
CDS sequence (LotjaGi1g1v0650400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAGGAAGATATCATTCTTGTCTC TTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTTCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCA GACTTAGATGGACAAATTACCTGAGGCCAGGAATTAAGAGAGGGAACTTCACTCCTCATGAAGAAGGGATGATAATTCAC TTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGACATAAAGAATTA TTGGAACACACATCTTAAGAAGAAGCTCAAGAAATTCCAATCGTCCATAGAACCAGACTCAACGAACTACCTACCAAGGA GCTTCAGTGACAGAAGCTTAGATATCAGCAGCAGCAGCAATATTAATAACAACCATGCCTCATCAATGACTCAAACTTCT CAGTCCTCCACCACATATGCATCAAGCACTGAGAACATTTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCTCCATCAAA AAAGCCACAACTCAAAGGAACAAGCACAACAACCAGAGATCATGAAGAAGAAAAGGAAGAACTTCAAGGAAATGAAAATG ATCATAAGCTGAAGCAAGACATGATGTCACATGAAGAGTTTGATTCGATTCTGTCATTTGAGAATCTGAACAATAATGCT GCTTGGGACAAGTCAACCTGTGATTCCATGCCTGAAAAGATGAGTACTTTTGAAGCTGCTTCTGTTTCTGACAAGAATAA CAACAGGCAAAAACATCATGAGATCAATGTTGTTAACAGTGCTCCTCCTCCATTGTCATATCTTGAGAAGTGGCTATTGG ATGAGAATGTTGGTCAAGTGGAGGAGATGATGGAAATGTCTCCAATATTCTGA
Protein sequence (LotjaGi1g1v0650400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIH LQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSSIEPDSTNYLPRSFSDRSLDISSSSNINNNHASSMTQTS QSSTTYASSTENISRLLEGWMRSSPSKKPQLKGTSTTTRDHEEEKEELQGNENDHKLKQDMMSHEEFDSILSFENLNNNA AWDKSTCDSMPEKMSTFEAASVSDKNNNRQKHHEINVVNSAPPPLSYLEKWLLDENVGQVEEMMEMSPIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 264 | 262 | 1.7E-125 | ||
| PANTHER | 3 | 264 | 262 | 1.7E-125 | – | |
| ProSiteProfiles | 9 | 65 | 57 | 26.054 | ||
| SUPERFAMILY | 11 | 108 | 98 | 2.93E-31 | ||
| Gene3D | 12 | 67 | 56 | 1.5E-19 | – | |
| SMART | 13 | 63 | 51 | 4.9E-15 | ||
| Pfam | 14 | 61 | 48 | 1.4E-15 | ||
| CDD | 16 | 61 | 46 | 5.70045E-11 | ||
| SMART | 66 | 114 | 49 | 3.5E-13 | ||
| ProSiteProfiles | 66 | 116 | 51 | 18.75 | ||
| Pfam | 67 | 112 | 46 | 2.1E-12 | ||
| Gene3D | 68 | 130 | 63 | 1.3E-19 | – | |
| CDD | 69 | 112 | 44 | 6.82779E-9 | ||
| MobiDBLite | 142 | 168 | 27 | - | – | |
| MobiDBLite | 180 | 214 | 35 | - | – | |
| MobiDBLite | 194 | 214 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0650400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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