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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0656600 |
| Transcript ID | LotjaGi1g1v0656600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisomal membrane MPV17/PMP22-like protein; TAIR: AT5G19750.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; Swiss-Prot: sp|Q7SCY7|SYM1_NEUCR Protein sym-1; TrEMBL-Plants: tr|A0A151TAQ5|A0A151TAQ5_CAJCA Protein sym-1; Found in the gene: LotjaGi1g1v0656600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121616439..121620986) extracted from Lotus japonicus Gifu genome v1.2.
TACTAGTCATCTCTTTCTGTAACAAAACAAGGTTAGAGATGTTTTCTTCTGACACTGTCACTGTGAACTGCGAAGTGCTC CAGTGAGTGAAGCGCAAAATCTGCAGCAACAATGGCGTATGGAGCATCAGCATGCTTCGCATTCAGCCATGGACCCATTT GCCGTCAACCCATTTCCGAACCCACTCGCCGCCATCTTCAATTGCCTAGGTGCTCTTCGTCTTCGCTCCCCTTCAACAAC AACAAATTCTCCACCCTCCCCTTCAACCGCTCTGGACCCGCCTCTTTCACCGGACTACGCTTCCATGATTCTCGCCTCTC TGCCCTCTCCAACGATGGTTCAGGCGGAACAGGTGGTGGCTCTGGGGACTGGTATTCTGGCGGCGGTGGTGGCGACGGCG GTGCTGATGGCGGAGATAAGTGGTCCTTCCTTTCATGGTAAACAAATGTTCAAAAAAGTATAAAATGTTTTTTTCATGTC CATGGCTTCATCTTGTTTGTAACATGCATGTTACTTAGACATAAATCTGAATTTTATCATAAGCACATTGCTCGGTAAAA TTAACTTTAGAGTTTAGACTCACTATAAGCTCTTTTGAGCTTATTTTATTAAGCTTATCAAATTAGCTTATGGATAAGTA GGTTAATGTTGAGCTTATTTCAATAAGCTTATCAATCGAGTGAACCTGTAGGTGATAAGTGCTTATTAACTTAAGCCCTT GATTAAGATGTTTAGTGTTGGTCATAAATTGTTGATATTGTTATATGTCCTTCATTTTATACACTTCTTACAGTTTGTTT ACTACTTATTACTTTTCAAACTATTTGATGTGGCTCTAAACCTTCTTTTGGAAATGTATCATGACTTTACCACAGGTACT TGGCTCTTCTTGCAAAACATCCTGTTCTAGTAAAGGCTCTAACATCGGCGCTTTTGACACTAATTGGAGATTTGGTTTGC CAGGTATTACAACTATCTTCTGCATGATTCTCTTTCTACAGATTGTCTAATGTTGTGCAATTGGTGTTATAGATCTTCAT GGATGTTTCAATATGTATGGGATACATTAGGATAAATTCCACATAAAATAGAATACTTATGTTAGGCCTCCTGGGTGTGG CTCAAGTGCTTTGCGTTGCTTTATACTAATTTGTCACGTTATGGTTGTGGTGTATGGACAAATGACTGTGGATTATTTTT GAAGCATCAGGGAAGATCTAATGATGATCAAGTTCATGGAATCAAACTGTTTGAATGAGGGTATATACGAATTAAGATTG TAAAATTACATGTAAAGGACACCAGACCGTCAGTTTCTTGTCACTTATTTTGAAGACGATTCAGGATAATTTCACCACTA GCTGAAAATGCCAGTTAGAAACAATTTTGAATATTGTGTTTAGACAACAAGAAAAACAATATGTATAGCCTGAATTGGCT TATTAGTACAATAATTTGATCTCCAAATAGAAAGCAATGGCTGGGAAGTTTCTTGTAAAATCATAACAGAAACCCTTACA CTCTTTTTCACATTGGTTAATTTTAAACTTCTCTGGGGACTGGTGAAGGAGAGAGAAATCTGAAGCCTAAGTAGTTTAAT GCTTCAGAACTAATCTTACTGATTTCGGTTTTACATTAACTGAAGTATTTTGATTTTAGCAGTCTTGCAAGTATAACTAA ATAACTAAGGCCGTTAAATAACTAAATAGATGGCTGTCCATTGAACTACAGTGAGAGAGATTGATAGTCCTTAAGATGAT AGATACTTCTTGTTCTCCTGAGGAAGCTTTTGAGAATCCAGTGTCCTTGTTCGCTGCTAATTTATTTCAAATCTCTCTAC CATTTATTTGGAATTATTTTTTTCTCTATTCTCTGACTCATTTCCTACTTAATGTTTATGCCTTGTGTCTTCAATTTCTT TTTGCAACTGACTAGTAGGAAAGTGATGCATTTTTTATTTTTGCTTTCTCAATTTTATATCTTCACTCACATGACAGCTT GGTCAATCGTTGCTTTTGGTATCAAGCTTGCTATGACATAGCATTTGAATTATTTTTAACCGGAAGCGTTATTAAGCCAA TACATAATTTATTTTTTGAAGTATTGAGGCCTTCATTCAGTTACACTTATTAAAATTTTAAATTTACTCTTTATTTTCCT CAGCTTGTGATAGATAAGGTGCAGTCACCGGACTTCAAGAGAACATTCGTCTTCAGTCTGCTTGGTTTTGTGTTGGTGGG TCCAACATTGCATTTCTGGTAATGCCTTTGACTCTGTCCTGTTCCCAACAGTTAACTTTGTTTGTAGTCAATTGATAGTG ATAATGTTTTAAATAATGTAAAAAAATCCATGCCAGTGCAATTATGTTGTAAGTTATAGTCCTATCCTGCGTGCAGTTCT TTTGTAGCAAAAACATTGCAAATATTTATCCCCTCCCCCAGTGAATATTATTAGAAAAATCAAATGAAGATTCACTTATG AGATTCTTGGTGTCAAATTTATGAGACTTTGTGCATATGTTAACGTGGTCACTAGAGTTTGTATGAAGAGTAGGAATTTT AATCCATTATCTTTCCTGACATTTTCTTTGAAACTATAGGTACTTTTATCTGAGTAAATTGGTAACACTTCCTGGAGCTT CAGGTGCAATTTTGCGGCTTGTAATTGATCAGGTGAGATATTTCCATCGGTCACTTCGTATCTATCATTAAGTATGTTCT TGTTTGATATTTAATTTTGACTGTGATGAAACATGATTGCAGTTCATATTTTCTCCGATATTCATTGGAGTTTTCTTAGC TAGCTTGGTGACACTGGAGGGAAGCCCATCACTAGTTGTACCTAAGCTTAAACAGGTTTTGGTGACAGATTTTTTTGTCC TGTATCTGCCTGTAAAATTGTGTATTCATGGAGCGGTAATGTTGTTGTTGTTTTGATTGACATTGAATACTCATCAAGAA ATTGGTTTTGTAGGAATGGTTTTCTTCTGTTCTAGCAAACTGGAAATTATGGATACCTTTCCAATTTCTCAACTTTAGAT TTGTTCCACAACAATTTCAGGTTAGACTATGGGAATTTGACTTGACCACATGCATAGTCTGTTCATCATTCTGAAATCTG TTGGATTTTTAGTATAGTGAATGAAATGAACCTAGTTTTCTTTCTTCAAATTCATTTGAACATACTATGTTTTCTATATT TTGTTAATTACTTCTAATGGAATCTCAAAATTCTTAAAAGAAGTATGTTCTATTGATCTGTCAATAGACACACAAATAGA AAACCTTTGTTATCCTTTTGTAGTTAAACAACAGTAGAAAATAGCTCATAAGGATGGTATTTTTTGTTGACATTTCTTTC TTCATTTTACTTCATATTTGGATCTTTGGGATGCTATATGCTATATGTCCTTTTCCAAGTGAAGCATTACAAGGGTTCTC AGTTCATTGTTTCCTTTCTTTTTATTCAAACAAGCACATGCATATGCATATATACATTGTGTGGTCTCACAGAACTATTA TTGATATTGTATAGTTCATTTAGAAATGGTAGAAAAAGGAGATAATTATATGGTTATGCTTGCTGACAGTTACAGGATAT TTTCCCCTGCTGTTTTTTCTATGTTGACTGTAAACATTGACCTCATGACATACAAGTTTTTTCTTTGACTTGCTTCTCCA TTTTCATAATGTTATCGCTGATTTAAAAATATATGGAAACAATTTCAGGTTCTTGCTGCTAATGTTATTGCTTTAGTATG GAATGTTATTCTCTCATTTAAGGCACACAAAGAAGTTCTTCAAAAATAGGTAAGCTTTATATTCCATGAATGCATAACAC CTAGTTTTAATTAGTCTCCAACTCAGAAATTCAAATACACACGAGCACGAGGCCAGAAGAAAAAATGTTTCCTGCATTAA CAAAACTATAATCAGACCTTTTACATCAGCAACTGTTGGAAATTCCTAGAAATGTTTTAACCAATAACTGCTTCAGAGTT CAGACATGTGGTGATTTTTTTATCTAGGAATCCCAGTCTTACGTATGCACAATACTGGCATTGTATTTTTCTATTTTTTT AATATAGTAGCTTAGCTGATGAAAGCATGTAGTACATAGTAATGATTTTTATCTTTGTTGATTATCCTTCAGAATTGTTC AGGCTAGTTTCTTCTGGGGAGCTATAGAAGCTGTGCTCAAGTCTTTTAAATGCGTGTTTCGATTGGCTCTGAGGACAAAC TCCATAGCACATTTACCATTTGTAGCTTCTTTATCAAAGCGATTTCACACATGCAAACACACTATAAAAGTTTTGGTTAT TTAGGTCAAAATGAAGACCAGTTGTTCTATAAACTCACATGAAGAATTTTGCGTGCAGTTTGGTTAATTCAATCTTCAAT ATTTTATCATGTATGCAGATTCGGCAAAATTTAAATTACCTGTAGACTGCTAATAGAGTCCTACCCTTTTAACTGGGCAA TCAAATAGTGAAACAAATATTTAAATGTTTTTTAAAAACTCTTTTCATATAATGAAATTAAAAAGAAG
CDS sequence (LotjaGi1g1v0656600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTATGGAGCATCAGCATGCTTCGCATTCAGCCATGGACCCATTTGCCGTCAACCCATTTCCGAACCCACTCGCCG CCATCTTCAATTGCCTAGGTGCTCTTCGTCTTCGCTCCCCTTCAACAACAACAAATTCTCCACCCTCCCCTTCAACCGCT CTGGACCCGCCTCTTTCACCGGACTACGCTTCCATGATTCTCGCCTCTCTGCCCTCTCCAACGATGGTTCAGGCGGAACA GGTGGTGGCTCTGGGGACTGGTATTCTGGCGGCGGTGGTGGCGACGGCGGTGCTGATGGCGGAGATAAGTGGTCCTTCCT TTCATGGTACTTGGCTCTTCTTGCAAAACATCCTGTTCTAGTAAAGGCTCTAACATCGGCGCTTTTGACACTAATTGGAG ATTTGGTTTGCCAGCTTGTGATAGATAAGGTGCAGTCACCGGACTTCAAGAGAACATTCGTCTTCAGTCTGCTTGGTTTT GTGTTGGTGGGTCCAACATTGCATTTCTGGTACTTTTATCTGAGTAAATTGGTAACACTTCCTGGAGCTTCAGGTGCAAT TTTGCGGCTTGTAATTGATCAGTTCATATTTTCTCCGATATTCATTGGAGTTTTCTTAGCTAGCTTGGTGACACTGGAGG GAAGCCCATCACTAGTTGTACCTAAGCTTAAACAGGAATGGTTTTCTTCTGTTCTAGCAAACTGGAAATTATGGATACCT TTCCAATTTCTCAACTTTAGATTTGTTCCACAACAATTTCAGGTTCTTGCTGCTAATGTTATTGCTTTAGTATGGAATGT TATTCTCTCATTTAAGGCACACAAAGAAGTTCTTCAAAAATAG
Protein sequence (LotjaGi1g1v0656600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYGASACFAFSHGPICRQPISEPTRRHLQLPRCSSSSLPFNNNKFSTLPFNRSGPASFTGLRFHDSRLSALSNDGSGGT GGGSGDWYSGGGGGDGGADGGDKWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSPDFKRTFVFSLLGF VLVGPTLHFWYFYLSKLVTLPGASGAILRLVIDQFIFSPIFIGVFLASLVTLEGSPSLVVPKLKQEWFSSVLANWKLWIP FQFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKEVLQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 118 | 118 | - | – | |
| PANTHER | 57 | 277 | 221 | 3.1E-82 | ||
| PANTHER | 57 | 277 | 221 | 3.1E-82 | – | |
| Phobius | 119 | 141 | 23 | - | – | |
| Phobius | 142 | 152 | 11 | - | – | |
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 153 | 174 | 22 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| Phobius | 186 | 210 | 25 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 211 | 252 | 42 | - | – | |
| Pfam | 212 | 270 | 59 | 3.4E-19 | ||
| Phobius | 253 | 271 | 19 | - | – | |
| Phobius | 272 | 280 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0656600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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