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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0656900 |
| Transcript ID | LotjaGi1g1v0656900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nascent polypeptide-associated complex subunit alpha-like protein; TAIR: AT3G12390.1 Nascent polypeptide-associated complex (NAC), alpha subunit family protein; Swiss-Prot: sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit alpha-like protein; TrEMBL-Plants: tr|I3T8X0|I3T8X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0656900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121687215..121690714) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGGTCTATGAACAAAGCTTGGAAGAAAATGCTGACGGGCCAAACTTGAACCGGGCCAACCCGTCTTGAAGGTATATT AAAGTAAAAGCTCAGTTCTAGGGTTTTAGGTTGATCGATCTGATCTATTGCTCCAGAAATCTCCTCTGTCTGCACCGGCA CCCACCGATCAACCGCCATGACTGCCCAGTCCCAAGAAGAGCTTCTCGCTGCTCATCTCGAACAGCAAAAGATCCATGTA ATTGCTTCTCTTTTCAATCCTCTTCTTGTTCATTTTCCCCCATTTTTTTTGCTTTTTTTTTATTTTAATTTTCAATCAGT AGTGTTTCTGGATTGTTATTTGATTTGAAATGGATTGTTTCAGTGTGATACTGTGATTGTGTGCAAACTTTTGTGTTTTT TTCGATCAGTTGAACCCTTTTTAGGGTTTTGTAGCTTGTGGGCTATGAAGGGGTGTGTAAGTTTAATCTCTTGTTTCAGT TTTTTGAAATTGAATGGTTAGGGCATGATTTTTTCCTATTGGGTTGTGGAAAATGGTAGAAAGTTACGAGCTTTCGATTG ATTCAATGTTGGGCATTTTTCTATGTAATAGATTGGAAGGTTTCTGAGGATTTAGATGTTTGTGCAATTTGTATGAAACA GAAGAGTCTGATTTTGAAATCACAGATAGGAATAGAAGAGAAACTCAACATGGGTTTTGATATTGATAGCTAGACTCCTA ATAGCCCCAGTTGATTGTTGCCGCTTTTTTTTGTGATTACTCTGGATTGGCCACAGCTGATGAACTTTTTTACTGGCATG TTTAATGGCTTACTTTTTGTTGTGATTCTAGTATTTTGAACTTGTGGGTAATATCTTTTGTAGGATGATGAGCCTGTAGT TGAGGATGATGATGAGGACGATGATGATGAGGATGACGATGATGAGGATGATGACAACATTGAAGGTAAGCTGGTGAATA ATATTTACTGAAGTAGTGCTTATGACTTCTTACTCATTTTTATTCTTGCATTTGGCACTGGTTTAGTTGAATTCATTCTT TAATTTGGTTGGGATTAGTATGAAGTAAAAAGTGTGTATGTGGTAAATAGGAATTAATTTGGCTTGGCTTTGTTCAAGAG GTGGCCTATTGTGGCTTAAATTAAGAATTTGGTTCTTTGATTTTTGTTCAGTAGTTATTCATTTTCTTTTCTTTTATATG GAGCATTTTTTACAAGGCTTAATCACCGTTGTCAGGGTATCAGAAGGTTGTTTACTCCTGTTTTTGGTTTAATTTTTTAT TATCAGGGGGATTTTTGTTTTCTCTTCCTATATTATTTTATAATTTCATCTATTAATTTAGAAATCACTTTCACTGTGGT ACGAGTGTGATAATTAACATGATTTAATGGTACACATTGAAATAAATCTGTAGCTCTCTTACTGTTGTTCTGTGTTATAA GACCTGACTTGATAGTTAATGCCAGTGCCTTTCATCTCAGAATATATTTCAAAATGCATTTAGATTTTGATGGGCCTCTA ATCTATTCTGTGCCACCTAGTTAATTCTGCTATTTCTTTTTGTATGAACTGGATCTAATGTCAGTTATTTATGGATACTA TTAAGAGTCTCTGAGGAGTTTGTGTTGTATTGCAGGACAAGAGGGTGATGCATCTGGTAGGTCAAAGCAGACCAGAAGCG AAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTTACAGGTGTCAGTCGTGTGACAGTCAAGAAGAGC AAGAATGTTAGCATTTGACATTTGTAATTTATCTGGTTTTCCATTGTTTCATGTATTTTTTGTTCTTGTGAAAATTGAAT TCTTGGACTTCTGTTTGTGCAGATTGTGTTCGTCATCTCAAAACCAGATGTTTTCAAGAGCCCAACTTCAGACACATACA TTATATTTGGTGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAAACCCAGGCAGCAGAGCAGTTCAAGGCTCCTAAT TTGGGCAATGTAGGTTTGAAGCCTGAATCCTCTGGTGTTGCTCAGGATGAAGAGGATGTTGATGAGAGTGTAGATGTGGA CGAGACCGGTGTAGATCCCAAGGATGTAGAGTTGGTGATGACTCAAGCTACCGTGCCAAGACCAAAGGCTGTTAAAGCTC TCAAAGCTGCAAATGGCGACATTGTGGCTGCCATTATGGAGCTAACAAATTGATAGTAAGATTTGGTACAACTTTAGTAT TTGGAATGTGGAGCTGTTTTTCTTTGTTGATCAAAATTTTCGCTGTCCTTGGATTGCAAATACTGGCTTGCCAGTAATGT TTTACTGTCCCTGCGGAAGGAAAGACTACAGCCTCATTGGCCATATGTTTGAAGTGTTATTTACACCGTCGTAAGAAATG GATATGGTAACATGGTCACCGAACTCGTAATTTTTATCATGGTACCTAGCGCTTTGGTATTTAGTGCATGTTTGAATTAA ATTAGGATGACATTTTTGTTGGATTAGGGTCAAAGTTGGTTTTTATTATTTTTATTATGAACCGAATATGTCTTGAAACA TGATCTTATTGGTTGAGCTAGTTTGGTTTTGGGGGAAAAATAGGTTTAGTTTTCTGTAACTGAACTGAATTAAACTAAAT TGTCTGGTTTTAGGGAAAAATTGGTTTGGGTTTATGTAACTGAACTGAATTAAACTAAATTGACTGGTTTTGGGGAAAAA TTGGTTTTGTTTTACTTAATTGAACTAAATTGTTTGCTGGATGTATTGATTTTTTTTTTTTTTTTTTTTGGAAGTATGTA ACAAAATTTAACATTTCATAACCTGTCTGTGGGTGTATTGGGAGCACGTGTTTATTGCAAACTGCAATCCACCAGGATCA TAGTTTTTAATTTTTTTTTGTCTTGCAACGGGTAAAAATATGGTAAAATCGATTAACCACTCTAGGACAAGTTTAGCATG TTCTCTGACAAATGTGTAACAGTGAGCACTGAGAAAGGAAGTGTTTTGAGTGGTGAAGGATAGTGTTTTGCAAGCAGCTC AGCAAGGATGGTGATGGGAGCTGTGATTGTGTAATTTGTGTTTCTGGTATGAAGCATTAGAAGAAACCCTAATTTTTTTT GTTCAAAAGAGTTTTCGGCCAATGGTTCCTTCATTCATATGGGCAAGGGCAAATACATCAAAGAGGCCTTATAAGCCCAA GAACAGCAATGCATAATCGCGAAAGCAAAGGCTAATACATTCTTATTTTCTAACTTGTTTAACTAATATCACCATTTAAC GTTTGGATCCACGTTAAATTCAACATGTTATAATCTAGCTTACATTAAACTTGATGTTGTCATAATCTAGCTTCTATCGA TATTAAACTCAATGTTGTTTGAGATACGTGAAATCACGTTTGTGTTGAAGAATTTCCGCACCACATCATCAAACTAAGAT AAAGGGCATGAGTCAAAAGCCACTTTATATAGTCACTAGACGTAAGAATAGCAAACCCTA
CDS sequence (LotjaGi1g1v0656900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGCCCAGTCCCAAGAAGAGCTTCTCGCTGCTCATCTCGAACAGCAAAAGATCCATGATGATGAGCCTGTAGTTGA GGATGATGATGAGGACGATGATGATGAGGATGACGATGATGAGGATGATGACAACATTGAAGGACAAGAGGGTGATGCAT CTGGTAGGTCAAAGCAGACCAGAAGCGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTTACAGGT GTCAGTCGTGTGACAGTCAAGAAGAGCAAGAATATTGTGTTCGTCATCTCAAAACCAGATGTTTTCAAGAGCCCAACTTC AGACACATACATTATATTTGGTGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAAACCCAGGCAGCAGAGCAGTTCA AGGCTCCTAATTTGGGCAATGTAGGTTTGAAGCCTGAATCCTCTGGTGTTGCTCAGGATGAAGAGGATGTTGATGAGAGT GTAGATGTGGACGAGACCGGTGTAGATCCCAAGGATGTAGAGTTGGTGATGACTCAAGCTACCGTGCCAAGACCAAAGGC TGTTAAAGCTCTCAAAGCTGCAAATGGCGACATTGTGGCTGCCATTATGGAGCTAACAAATTGA
Protein sequence (LotjaGi1g1v0656900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAQSQEELLAAHLEQQKIHDDEPVVEDDDEDDDDEDDDDEDDDNIEGQEGDASGRSKQTRSEKKSRKAMLKLGMKPVTG VSRVTVKKSKNIVFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLGNVGLKPESSGVAQDEEDVDES VDVDETGVDPKDVELVMTQATVPRPKAVKALKAANGDIVAAIMELTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 207 | 207 | 6.4E-105 | – | |
| PANTHER | 1 | 207 | 207 | 6.4E-105 | ||
| MobiDBLite | 1 | 73 | 73 | - | – | |
| MobiDBLite | 24 | 48 | 25 | - | – | |
| MobiDBLite | 49 | 70 | 22 | - | – | |
| ProSiteProfiles | 60 | 125 | 66 | 17.629 | ||
| SMART | 63 | 119 | 57 | 9.1E-26 | ||
| Pfam | 63 | 118 | 56 | 8.4E-23 | ||
| Gene3D | 69 | 122 | 54 | 9.0E-32 | ||
| MobiDBLite | 138 | 166 | 29 | - | – | |
| Gene3D | 167 | 206 | 40 | 6.7E-13 | – | |
| CDD | 170 | 206 | 37 | 2.71952E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nascent polypeptide-associated complex | A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome. |
Expression pattern of LotjaGi1g1v0656900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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