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LotjaGi1g1v0656900.3

Overview

Field Value
Gene ID LotjaGi1g1v0656900
Transcript ID LotjaGi1g1v0656900.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Nascent polypeptide-associated complex subunit alpha-like protein; TAIR: AT3G12390.1 Nascent polypeptide-associated complex (NAC), alpha subunit family protein; Swiss-Prot: sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit alpha-like protein; TrEMBL-Plants: tr|I3T8X0|I3T8X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0656900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:121688502..121690537) extracted from Lotus japonicus Gifu genome v1.2.

ATGACTGCCCAGTCCCAAGAAGAGCTTCTCGCTGCTCATCTCGAACAGCAAAAGATCCATGTAATTGCTTCTCTTTTCAA TCCTCTTCTTGTTCATTTTCCCCCATTTTTTTTGCTTTTTTTTTATTTTAATTTTCAATCAGTAGTGTTTCTGGATTGTT ATTTGATTTGAAATGGATTGTTTCAGTGTGATACTGTGATTGTGTGCAAACTTTTGTGTTTTTTTCGATCAGTTGAACCC TTTTTAGGGTTTTGTAGCTTGTGGGCTATGAAGGGGTGTGTAAGTTTAATCTCTTGTTTCAGTTTTTTGAAATTGAATGG TTAGGGCATGATTTTTTCCTATTGGGTTGTGGAAAATGGTAGAAAGTTACGAGCTTTCGATTGATTCAATGTTGGGCATT TTTCTATGTAATAGATTGGAAGGTTTCTGAGGATTTAGATGTTTGTGCAATTTGTATGAAACAGAAGAGTCTGATTTTGA AATCACAGATAGGAATAGAAGAGAAACTCAACATGGGTTTTGATATTGATAGCTAGACTCCTAATAGCCCCAGTTGATTG TTGCCGCTTTTTTTTGTGATTACTCTGGATTGGCCACAGCTGATGAACTTTTTTACTGGCATGTTTAATGGCTTACTTTT TGTTGTGATTCTAGTATTTTGAACTTGTGGGTAATATCTTTTGTAGGATGATGAGCCTGTAGTTGAGGATGATGATGAGG ACGATGATGATGAGGATGACGATGATGAGGATGATGACAACATTGAAGGTAAGCTGGTGAATAATATTTACTGAAGTAGT GCTTATGACTTCTTACTCATTTTTATTCTTGCATTTGGCACTGGTTTAGTTGAATTCATTCTTTAATTTGGTTGGGATTA GTATGAAGTAAAAAGTGTGTATGTGGTAAATAGGAATTAATTTGGCTTGGCTTTGTTCAAGAGGTGGCCTATTGTGGCTT AAATTAAGAATTTGGTTCTTTGATTTTTGTTCAGTAGTTATTCATTTTCTTTTCTTTTATATGGAGCATTTTTTACAAGG CTTAATCACCGTTGTCAGGGTATCAGAAGGTTGTTTACTCCTGTTTTTGGTTTAATTTTTTATTATCAGGGGGATTTTTG TTTTCTCTTCCTATATTATTTTATAATTTCATCTATTAATTTAGAAATCACTTTCACTGTGGTACGAGTGTGATAATTAA CATGATTTAATGGTACACATTGAAATAAATCTGTAGCTCTCTTACTGTTGTTCTGTGTTATAAGACCTGACTTGATAGTT AATGCCAGTGCCTTTCATCTCAGAATATATTTCAAAATGCATTTAGATTTTGATGGGCCTCTAATCTATTCTGTGCCACC TAGTTAATTCTGCTATTTCTTTTTGTATGAACTGGATCTAATGTCAGTTATTTATGGATACTATTAAGAGTCTCTGAGGA GTTTGTGTTGTATTGCAGGACAAGAGGGTGATGCATCTGGTAGGTCAAAGCAGACCAGAAGCGAAAAGAAGAGTCGCAAG GCAATGCTTAAACTTGGAATGAAACCTGTTACAGGTGTCAGTCGTGTGACAGTCAAGAAGAGCAAGAATGTTAGCATTTG ACATTTGTAATTTATCTGGTTTTCCATTGTTTCATGTATTTTTTGTTCTTGTGAAAATTGAATTCTTGGACTTCTGTTTG TGCAGATTGTGTTCGTCATCTCAAAACCAGATGTTTTCAAGAGCCCAACTTCAGACACATACATTATATTTGGTGAAGCT AAGATTGAAGACTTGAGCTCACAGCTACAAACCCAGGCAGCAGAGCAGTTCAAGGCTCCTAATTTGGGCAATGTAGGTTT GAAGCCTGAATCCTCTGGTGTTGCTCAGGATGAAGAGGATGTTGATGAGAGTGTAGATGTGGACGAGACCGGTGTAGATC CCAAGGATGTAGAGTTGGTGATGACTCAAGCTACCGTGCCAAGACCAAAGGCTGTTAAAGCTCTCAAAGCTGCAAATGGC GACATTGTGGCTGCCATTATGGAGCTAACAAATTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0656900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGCCCAGTCCCAAGAAGAGCTTCTCGCTGCTCATCTCGAACAGCAAAAGATCCATGATGATGAGCCTGTAGTTGA GGATGATGATGAGGACGATGATGATGAGGGACAAGAGGGTGATGCATCTGGTAGGTCAAAGCAGACCAGAAGCGAAAAGA AGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTTACAGGTGTCAGTCGTGTGACAGTCAAGAAGAGCAAGAAT ATTGTGTTCGTCATCTCAAAACCAGATGTTTTCAAGAGCCCAACTTCAGACACATACATTATATTTGGTGAAGCTAAGAT TGAAGACTTGAGCTCACAGCTACAAACCCAGGCAGCAGAGCAGTTCAAGGCTCCTAATTTGGGCAATGTAGGTTTGAAGC CTGAATCCTCTGGTGTTGCTCAGGATGAAGAGGATGTTGATGAGAGTGTAGATGTGGACGAGACCGGTGTAGATCCCAAG GATGTAGAGTTGGTGATGACTCAAGCTACCGTGCCAAGACCAAAGGCTGTTAAAGCTCTCAAAGCTGCAAATGGCGACAT TGTGGCTGCCATTATGGAGCTAACAAATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0656900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTAQSQEELLAAHLEQQKIHDDEPVVEDDDEDDDDEGQEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKN IVFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLGNVGLKPESSGVAQDEEDVDESVDVDETGVDPK DVELVMTQATVPRPKAVKALKAANGDIVAAIMELTN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 61 61 - –
PANTHER
PTHR21713
1 196 196 8.3E-101
IPR016641
PANTHER
PTHR21713:SF27
1 196 196 8.3E-101 –
PIRSF
PIRSF015901
19 196 178 5.0E-61
IPR016641
MobiDBLite
mobidb-lite
24 39 16 - –
MobiDBLite
mobidb-lite
40 59 20 - –
ProSiteProfiles
PS51151
49 114 66 17.629
IPR002715
Pfam
PF01849
52 107 56 7.6E-23
IPR002715
SMART
SM01407
52 108 57 9.1E-26
IPR002715
Gene3D
G3DSA:2.20.70.30
58 111 54 8.1E-32
IPR038187
MobiDBLite
mobidb-lite
127 158 32 - –
Gene3D
G3DSA:1.10.8.10
156 195 40 6.2E-13 –
CDD
cd14358
159 195 37 2.87101E-15 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005854
Cellular component Nascent polypeptide-associated complex A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0656900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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