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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0658600 |
| Transcript ID | LotjaGi1g1v0658600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II reaction center PsbP family protein; TAIR: AT3G56650.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein); Swiss-Prot: sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic; TrEMBL-Plants: tr|A0A1J7HRX1|A0A1J7HRX1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0658600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121925645..121932932) extracted from Lotus japonicus Gifu genome v1.2.
TAGAGGGACTATGAATCAAGTGTAACAAGTGTCATCCTCTAAATACCATCATATCAGATATTCTCAATGGATAAGAGACA GAGTGACTCAATCAACACTGAACCTTCTCCCTTCATACACTGCACATTTTCACACCACTGATCTCTGCAATGTCTACCTC TCCATTCACCTCCTTTCTCACACTCTCAACCCAGTCACCTTCAAAGCTCTCACCTGTTCGCACATTCAGAGCCTCAGCTT CTTCTGACTCAGTTCCTGCAACAAGAAGCTACCAACTCATACCACCCAGAAGAGAATTCTTGAAGGGTATTGCGTTGGGG GCACTTCCACTTGTTCTCCTCAGAGAAACACCACCACCTGCAGAAGCTAGAGACGTTGAAGTTGGCTCCTTCCTCCCACC TTCACCAGCAGACCCATCTTTCGTTCTCTTCAAGGCTTCTCCTAAGGACACCCCTGCCCTTCGAGCAGGTACATTGAATT TTTGTCCTATCCAAAAGCTGAATTTAAAGGTTGCTTTTTTGGATACTGTTTATTTTGCTTTCATGTAGGAGACTAAAAGT GTTGATTTTTCATTGAAAATATGAGATAAATGGGTGAAGAGACTAGTGGGTAGGTAGTGATTGTTTGATTATGCATCTGG GTAATGAGCATTAGAACTTGTTGTTAGGATTGAAATGGAAACAACTGGACTAGTAATCATTATGATCAGGGTTTTAAATT GCGGCTGCGAGTTTGATAGGGATAGAATTAGGGAGAGAGGGAAGAACAGAGAGAATAGAGAGGGAAACAAGGGAAAAGGA GTATCATTATCATTAACAACATACCAATTACATAGTGTATACACCTTATATAGCTAACTAGACTCCTAACCCAAATGCAT GTGTAACAGAGTTCATGGTCTTGGGACTTTCCACAGCCAAGTCAGCTGCATTTGTTCACAATTGCAATCTGCATAATTAA CCATAACCATAACTCTAATTTAAAACCTTGATAGTATCAATAGCCTGAATAATTTGAGCAGCTATAATTTTTATGCCTCT CCTGGAAAAGATTTGACTAATTAATCATTAGTTGATGATTGGATGAAGTGATGATTTTGCACCACTGGCTATCTTATTTG GTCTCTTGTAGGAATGAAGGGACTCAAGTCTGATCAAGTGTAGCTTTCTCTTAATCCACGTTCTTCTTCCCTTTCCTCAC TAGTTCACTCTTCACTGTGGCTCTCTTCTCCCCACTGTCCTACTTCTTCTAGCGCTCTCTAGGAAACTAGTGAATGAAAA AGAGTTTATATATATTTTCTTGTAACATAGTGACAAGTATCAGGAGGATCATATCATCAAATTCCCAGAATTCAACTTTG AGTTAAACCACAAATACCTACTAATGCTTCAGTATATTCATCATCAAATTCACAGAATACAACTTTGAGTCAAAAAACCA CTAAATACCTACTTCAGTCTATTACCTACTAATGCTTCAGTCTATTCCTCACCTTCCACTTCCTTGCTTGCCTTCCTCAC CTTCCACTTTCCTGCCTTTGGTGGAAATCACCAGTAAAGAAGTATCCTCAGTTCCAGCTACAATATCCCCACACCGTGGA TGAGCAGCGCATGTGATTATTGTTTGGGACAAAGCCATAAAACCTTGGTTGTTATCTCGGTGCTTCCACACAGAATCCAC ATGGTAAGGAGAGTCGGTGGAGCGATGAAAATCCAAGAGAAAAATGCCACTTGCATTTCGTGCTGGTGCCATATAGACCG AGGTGGTAGATAACCATGAGGATCTTCTAAGGCAAAATGGATCACGGCATGCCTCTTTTAAACCAGGTAGTACATATGGT CGATGAATATGCGTGATTGTAGTAGAGTGAAGATCAAAAATACCTGACCAGCCATTATTAACATGGAATGCTAACTGCGT CTGATTGGATGGATTAAAACCAATGGTGTCAATATCCAACACAAGACGACCTGCTCCCTCATTCAAATTTTGAGCCTCCA GCAAATTTGGCAATTGCCATTGTTGTATAGGAGCAGCGCCTGAACGAAGATCCCACAGACACATGTAGCCACTTGACCCA CCACCCACAAGAATCTGATCACCACTGCCATCTAAATATTGGATGCTGTTAAGACTTCGATCGAGACCTGATTCAAGCTG GCGGATGGGTAGATCCCTCTCTCTTGTGTCCCAAACCCCAACAGTAGGATATTCCGAATCAGAAGCAACTATGCAGCTTG GATTGGTTGATGCAAAAGCAACATCAGACAAACCTTTATCCCAATCGTGATTATTGACTCTTCTCTTGCACACTGCTTTC GATCTTAGGTCATTGCAATCGAATATTTGTACATCATATAGGCTTCTAGATCCACATGCAATCTCATTCTGATCAGCAGG ATTCCATTTGATAGCATTGATTTGTTTAATGTCGGAGTCGGATCTGTGTGCCAATTGCTTGCTTTGATCTTCTCCATCTT GTGTGTGGCAATACAGGGATTCAAAATCATAAACAGTTAAACAGCCTGCTCTTGTCCCAGCTGCCAAGTACCTTCCCTGG TTATCAAATGTTAATGCCGAGACACCATTCTTTCTATCAACAAGATCAGGACCTCCGTAGTTATATTCACTATCACTGCT GTCACTTGTATCAGCTTCACTATCTTCAACTTCATGAATGATTTGTTGTGGATGTGATTTACAGTTCCGGCCATTAGAAA GATAATTGTGGGGGAAGACTCCAAGTTCGGAATGCGATCGAATTAGCAAATCCGTCTCCCAATTGGAATTGGCTGCTCTC CCATGCACTACATGTGCAGATCTGTTCCTGCGCGATGACCTAATCCCAGGTGCCATTTCTCCGATGCTTTTCTTCTTCCT TTAATTTGCTCTAATGCTCTAACCGGCGTTTTGCTTCCGTCTTCTTTTATATATAAAAATGGTTAATGTGAACTCGCTGA TGTACTTTGCGTGTTTATTGTAATCGACTCTGGAGCTGGACGAATTGAGAAATTAGCAGCTCAGGATTTATGTAAGATAT GAAGTTAACTAGAAAGAGAAACAATTATTGAAGGTGTAATAAATGAAAATATGGGCTGCTTGGACTTTAATTATGTTGCT GAAATTTTCCTTCTGGGGATGATTTTAAATTTGGGCAATTTATAAATGATTGTTGAGATAGCGGATGACTAGCTAGTATT GTTGATTAAGATATGAATAAAAAGAGCAATGTGGCTCTAGGAAATATTTGAGTGATTACTAGACATGGCTTCAATTGATA TGCCCCATTTTCTGAAATACTAATTTCCTTGAATTCACTATGACCACTACTTAAGAGAAACCATCTCAGACTTAGGCACG GTTAACACACTTTTAATGAAACTGGCATGCGAAAAAATTTCATCATGATGTGTGATGGAAGAGGTCATGTGTTGCATTCT CTGCATACATGCAGCCAAACATTTTACTTTTGCATTGTTGTCCCTTTTCTAGCTTCTAATAAAAGAAGAAATTTTAGTAG TTTAATTGCTACTCATTTGCTATATTCAATGCCATTGAGTAGAACATTGTAATGCTTTCTCATGGTTTAGTGATTGGGGT TATGTTATTTTGTAATGTATTTCGCCTTTATGCTATTTTATAACATATAAGAAATGTACACAATGAATTGCACAAATATC ATTTTATTGCAATCAAACTTTTCCTACATCATGGTCAAGCTAAAGAGTACAAAAATCCTAGTCTATATGTTCTTCACACT CAACTTCACAATTTCAAACTTGAAACAGTACAAAAGTCTTAAGTCTAGGTGTTCTTTACACTACTTAACAATTTCAAATT TGAAACTTCAGTTTCATGGAAGTTGTTCACACTTGCCTCTGCTCTTGGATTTGGACTTGCTTTGGTTTGAAACTTGAAGC ACTTGCAGGTTATAAATATGATAATGAGTGCAAAGCATTTGTGCTTCTAGTGTTTGATCAGTAGATGCAAATTGCTTTAA GCTGACTTCTTTTGTTCTTGCTGGTGTTTGTGCTGCTGGCATCATCTTGAGCATCATCCTTTTGTAAGAATTAAGCCTGT GACATTAGGTGTAGGTCTAAGTAAACAAAATAGGACATTAAAGTTATGCAATCTCATTTCAATCTCCATGTTTTTCAACA TACAAAGAAAAAAGCTATACTGTATACATCATATATAAGTTTTGGCAAGTGTCAAGTGAAAGTGAAAGCAACAGTTCTAC TTAGAAGAATATAAACTAGTAAAAACTTTAAATTCTCCCATTCTACACCAGACCAAACAGGAAATCAAATTACAAAATGA GCCAGAGTCGATCAAACCATCATATAATCAAAAGGGGAATCATGTTTATCAGCCCCTGTTGCAGATTGAGTACTGAAAAT TGCAGTCTGAGAGAAATCTCCTTTGGAGCGTGTGACCAAACGACAGTGTATTAGCTTTCCAACAAAATATTACAACCGCT TGATGCATCTAACGGTCAATAGCGTTGCAAGAGTGAGGCTGGAGATGAACCGGATTCAGTTTAGAATTTAGAGCAGTTAA TTTGGAGGTTTATGCTCTCATTAAGTCTCAATACTGTCTTTAGCATCTTAATGAGAATCAATTATGTAAATGTCTCTATC TCTTCACTGATTCATATATGATAGTCAATAATGGTTATCCTCAAGCATCTATGTTTTGACACATGTTTAGTAAATTCTAT GGCTTCTGATGAATTACAATTGCCACCACCATCAGTATGGTTTTTCTATATGTCAAATTGATTCAAAATTAAGAGACTAA ACCATACCTCATGCATTTTGTCTCATCTTCTGTCGCTCTTTGCAATTGATCCTCTAGATTTAGTTCTTTGCAGGAAATGT GCAGCCATACCAGTTTATTCTCCCCCCAACTTGGAAACAGACACGAATAGCAAACATATTATCTGGAAATTACTGTCAGC CAAAATGTGCTGAGCCTTGGGTGGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAGTCCAGGTTGTGGCTTCACCTTTG ATACGCCTAACCAACAAACCAAATGCAACAATTGAGGACATTGGGAGCCCAGACAAAGTGATTGCATCTCTTGGGCCATT TGTCACCGGAAGCACGTATGATCCGGATGAGCTTATTGAGACTTCAGTTGAAAAGCTTGGTGATCAGACGGTATATTTTC TTTCCATAACCTGTTAGCTGATAAGCTTGTTGAAAACCAGCTTGGTGAAAAGCTTCAGTTGAAAAGCTTGCTGATCAAAC CAATCATATAAACTCAAGTTCCTATAACTGCAATGTGTGACGTAAGATGTTTATACACACAAATATACACAAGTTCCCAT GAGAAGTTCCAGAAACTATAATATCTGAAATCTCTGGAGGATAGGGCTCTTTGAGCATTCTTCTTTTATGCTGACTTGTC CTATTATGCTGCAATATAATGCTTAAGTGATAGATGTTTTGTCCATAACTCTATTCTTAAACAAGAAACCCTATGTGCAT CCCCCCCTAAAAGCATAAACAACTAATAGAAGTATAGAATAACAACAACAACAAATGCCTTATCCCAGTAAGTGAGGTAT ATGGATCACACTACACCATTGAGCTTGATAGTTAACAACATGTAAAAAGAAGAAGATCACTGGAGGCAACATTGAGAAGA GTTCATAACATGGTCTATAGTCTAATATCTCCTCGATAGGCGTCACCCTAATATCTCCTCTTATACGAATAATTATTCTG GCTAAATGTTGTTAACTATGTAAAGCAAGTGCAGAGCCCCCTTCCTTGTATTTTTTAGGCCAAGCTGCTTCTTTGAAGTT AAATTTTCCATTTTTTGCCAAGTATTAGGGACTAACATTACTGAAATGGTGTCTGCAGTACTACAAATATGCGCTTGAAA CTCCATATGCTCTTACGGGTTCACATAATCTAGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGCTAGT GCCAATGACAAGCAGTGGCAAACTTCTCAGAAGACTCTAAAGGCCATGCTTGATTCCTTTGTGGTGTAGTTCTCTGTCAA AGGTAAATTAGAGAGACTTACTTCGGTTTATTTCAGTCTGGATTTTGTTTATACAAGATCACTGTGCAAGAACTATGTTT CCTCATTTGATTTTTTTGTTCTGAGGTTAAAATCAGATTTTACGTGTTTTCTCAGTCTGGCTTTTTTTCCTTCCTTGTAA TTTTGTAAATACCTGATTAAGTCAGTGACCTGTGTTTCAATTTGTCTTTGATTTATTTTATCTTGGTAACCAAAAACTGA AAAAAAGTCCAAGAAAATAATATGTTCAGCTACTTGCTCATTTACTTCATTTGTGTTATCGTGTACATTTATTTGTTACT TCCTTCTACATTCATTTGTTATTTCCTCCCACTATCTAGTCACAATCGCCTAGCTACATGGTTTCATTTTTCTAAACCAA TATCAATTGTCTTTCTTTCTAGTCTGATGTTTGGTTTCACGATTTGCATAGAATTCAATAGCATGTTACTTAGAAGTTAA GACTTGTAGCTTCTTTCAAGAAGTGATTTTAGAGCATTTCAATTAATGCTTATATCAGGAAGGAAAGTCTCATTACAGGC TAGCTGCTAAGTTGATGGGAGTATGATAGGCAGAGTATACCTGCTACACTCAGAAGTAAGCTTTTGAAGTCTACTCTAGA CAACATCAACGTCCACTTAAATTTAATGTAATTTCAATGTTCAAAAATCATACAGGCCAGATTTTTTTTTGGGTAGGCAT ACAGACCAGATGTGTCTGACGGCAATCAAGTTGAAGGATTGTGATGGAAGACATGAACAATGCCTGTTTGATAACATAAG ATAAAATGCAGAAATTGATATGAAAACGTGAAAGCAACTAATAGCTCATTAACTTGAAGCACAATTACTTTTGATGCAAC TATAAAACAAAGGGATTTGATTTTAATACCACCCTCATAGATATTTATGTCATTCCCTTCCGCACTTTAATGTGCGGAAT GTAAAATTTGTGTACCGCACTATAAGTGTGGTTATGTGATTGATTCTCGCACGTATAATTGCGGTGAAATTGGATGGCGA GAAAATTAAACATATAGAATTGTTCGAAACTTTGTGCTCATTCATTGTCAATCATCCATGAGGCATGTTTTATACTCATA CATCTTGTACTGAAATTCTTATGGCAAATAACTTCTGAACATTTTTTTTTCTGTAGTCTGATAGTGTAAGTCTGTAAGAG CTTGTAAG
CDS sequence (LotjaGi1g1v0658600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACCTCTCCATTCACCTCCTTTCTCACACTCTCAACCCAGTCACCTTCAAAGCTCTCACCTGTTCGCACATTCAG AGCCTCAGCTTCTTCTGACTCAGTTCCTGCAACAAGAAGCTACCAACTCATACCACCCAGAAGAGAATTCTTGAAGGGTA TTGCGTTGGGGGCACTTCCACTTGTTCTCCTCAGAGAAACACCACCACCTGCAGAAGCTAGAGACGTTGAAGTTGGCTCC TTCCTCCCACCTTCACCAGCAGACCCATCTTTCGTTCTCTTCAAGGCTTCTCCTAAGGACACCCCTGCCCTTCGAGCAGG AAATGTGCAGCCATACCAGTTTATTCTCCCCCCAACTTGGAAACAGACACGAATAGCAAACATATTATCTGGAAATTACT GTCAGCCAAAATGTGCTGAGCCTTGGGTGGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAGTCCAGGTTGTGGCTTCA CCTTTGATACGCCTAACCAACAAACCAAATGCAACAATTGAGGACATTGGGAGCCCAGACAAAGTGATTGCATCTCTTGG GCCATTTGTCACCGGAAGCACGTATGATCCGGATGAGCTTATTGAGACTTCAGTTGAAAAGCTTGGTGATCAGACGTACT ACAAATATGCGCTTGAAACTCCATATGCTCTTACGGGTTCACATAATCTAGCAAAAGCAACAGCAAAGGGAAACACTGTT GTTTTGTTTGTGGCTAGTGCCAATGACAAGCAGTGGCAAACTTCTCAGAAGACTCTAAAGGCCATGCTTGATTCCTTTGT GGTGTAG
Protein sequence (LotjaGi1g1v0658600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTSPFTSFLTLSTQSPSKLSPVRTFRASASSDSVPATRSYQLIPPRREFLKGIALGALPLVLLRETPPPAEARDVEVGS FLPPSPADPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRIANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVAS PLIRLTNKPNATIEDIGSPDKVIASLGPFVTGSTYDPDELIETSVEKLGDQTYYKYALETPYALTGSHNLAKATAKGNTV VLFVASANDKQWQTSQKTLKAMLDSFVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 267 | 244 | 2.3E-120 | – | |
| PANTHER | 24 | 267 | 244 | 2.3E-120 | – | |
| CDD | 104 | 130 | 27 | 0.00876983 | – | |
| Gene3D | 107 | 268 | 162 | 1.7E-14 | ||
| SUPERFAMILY | 107 | 267 | 161 | 1.83E-29 | ||
| Pfam | 111 | 268 | 158 | 6.0E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. | ||
| Cellular component | Photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Extrinsic component of membrane | The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. |
Expression pattern of LotjaGi1g1v0658600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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