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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0658900 |
| Transcript ID | LotjaGi1g1v0658900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT3G10760.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SNB4|PCL1_ARATH Transcription factor LUX; TrEMBL-Plants: tr|V7CV76|V7CV76_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0658900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121961600..121964323) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAATCCCAAAAAAGAAAATAAAAAATAAATAAATAACCCATAAAAATCAGAAGGGAAAGCATCAGCAACAGTACGCA CAATAAAAAGCTGAAAAGAAAGAAATACAAGATCCACCTCGAACCTCTCTCCACTCCTCTCCACCACACTCCCACCACCA CTCTCCGCCTCTCTTCTCCCTAAACCACCACCACCACCACCACTCTCTCACACACACTCTCTATCCCTCAATCAAATTCT AGACACACAGATTTCCCTCTCAAACAATCAAATCCCCATCTTCTCCTCCACCACCACCACCACCAACACTTCTCTTTCAC TATCTGAAGAAAATTCAAACGACCCATTTGTTCAATTCAACACCCAAATCCAAAAACCTTGTTATTCCTGAAGAACAATC AAAATCAGTGAGGTTGGAAGAGGAACTAGCTGGTGGGTCTGTGTGTGTGGGAGATTTGGAGAACAACAATGAGGGAAGAC GATTCAAATTGGTTCGTTAGATGGGAAGAAGAGCTTCCTTCACCGGAGGAACTCATGCCGTTATCCCAAACCCTAATCAC CCCTGATCTAGCCATGGCGTTTGACATCAGAAATTCTCTCACCGCCACCATCAACAACAACCCACAACAACAACACCAAC AGCAGCAGCAGCTTCAGCTTCAGCAGCAGCAGCAGCAGCAACAGCAACCGCCGCTTTCTTCTAACCCTTCTTCTCTTCCT TCATCCGCCGATTTTGCTGATTCCGGCGAGCTGGGCTCCGGCAACGGCGGCGAGGAACCGGCCAGAACTCTCAAGAGGCC GCGCCTGGTTTGGACCCCGCAGCTCCACAAGCGGTTTGTTGACGCCGTGGCGCACCTTGGGATCAAGAACGCGGTTCCGA AGACCATAATGCAGCTCATGAGCGTTGATGGGTTGACCAGGGAAAACGTCGCTAGCCACCTGCAGAAGTATCGTCTTTAC CTCAAGCGCATGCAGGGGATTTCCGCCGGTGGTCCCGGCGGCGGCGGTGCAGGACCGGCAGGCTCTGCTGACCCTACTGA CCACCTCTTTGCTAGCTCCCCTGTGCCGGCTCATTTCTTGCATCCTACTGCCCGGCCTAATTCCGATCACTTCCTGCCGT TTGTGCCTGTGCCGGCTGCCCTCCACCACCACCATCAGCAGCAGCAACAGCAGCATCACTTGGCTGCGGCGGCGCAGTAT CACCGGCCGGTGGGGCATTTCGGGTCGCCCCCGAATGGTCACTTTGAGAATCCCTTCCTGTCCAGGCAGCAGCAGCTTCA TAGGATGGGGGCACCAGTGCACAACAACCCTGCTTTGTCTAGTTATGTGGAGGACATGGAATCTGCCAATGCATCAGGAG GGAGGAAGGTTCTTACTTTGTTTCCAACAGGAGATGATTGAATTTGTGTTATAATTGTATACAGTTGACATGTCATCTTG TTGTCTTGTGAAATTGATGTTTGGAGGTGTACTTAGAGTTTGGTCAGGGTCTTAGTTGTTAATTGGTGTTAGGGTTGTTG TCTTATTGATCATATGGTGTTACTAGCTGGTATTGGAGTCTAGATTGTTGAGTCTGCAGATCCAAATGCTCATGTCATTC TTATTTGGCTTGATCTGTGGTGGTACTAATTGGTATTCATAATGAGTATTGATAGGGATTCTACTGTGGTGTCCTTCCTG TAAGAAACATACCTTGTTGGTGGTAGTCTATATTCTCTGTCAGCTTCTGGTGGCTGAGATTCATCATGATGTCACCTTTT GGCGGCAATGGTAGTGTCTGTAAGCCTGTCGGTGAATCCGTGGCTGTATGTCGTTAGGGCTTCCTCTATGTTGATTTATT CGGTGGTTGTCCGGGAATTCGGCTGCAGCTCCAAATAATCCGGAACGTTACTGCTTAGGAAGTTCATTGATGGCAGGAGA GGCAAAAGGAATAAGTTTGGCATTTATCTCTGCAGGTGGTAATAAATATGCATTACACTCGCTCAGTAGAAACTAATGGA AGCAGATCTGATTGGCATATTTGGTTGTGAATTCTTCAACTAAATCCGGGAGCCTCTATTGTGAAAGACTTGTCTCGTCC TTGTCAAGTTTTTTTGTCCCGTAGAGGTGAGTTGTACATTGTTCGATTCTATAGAAGACTTTAATGCCTGATGTAAGGCA ATCGTTTGAAATTCTAATCTTACTCCAGTGTGGGGTTAATTTCTGTATGCTAGATGAACTCAAGTAAACTAGTTCCACAA TTTCAGGGTTCACCCTGCTTAAAAGAAAACAATAAGTTCATGTTACTTAATTGTGTATTTCTTCTTTGACTAGAATTCCT GATTCCCTTATGTACTAAGTACTGAGACTCTTAATGAGTCATATTATTTGATGATGAATTTGCTCATGATCAGTGTTTTA GCCATTCTCTGTTGGAATGCATTAACCAATGTTGTATGCTATGATCTGTCATAGATAACGTGTTTGTGCTTCAGAAAATA GGTTTTAGACACACAGATGCGCATGGATTGTATCAGATGAGAGGATGTTCATGTAGATGAGTTAATCCTGATCATACAGT TGTGATTAGAATTAAGCAAAACAATCTTGATTATTTGTGAATGATTGTATAGGCAAGGTTAAATCCTGATCACTTTCACT TGATATGCCTTATAGTTTGTTTTGACACACACACACAATGTACTTGGAGTTGCAGAGTCATGACTCAGTTGAAATATAAC CTGC
CDS sequence (LotjaGi1g1v0658900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGAAGACGATTCAAATTGGTTCGTTAGATGGGAAGAAGAGCTTCCTTCACCGGAGGAACTCATGCCGTTATCCCA AACCCTAATCACCCCTGATCTAGCCATGGCGTTTGACATCAGAAATTCTCTCACCGCCACCATCAACAACAACCCACAAC AACAACACCAACAGCAGCAGCAGCTTCAGCTTCAGCAGCAGCAGCAGCAGCAACAGCAACCGCCGCTTTCTTCTAACCCT TCTTCTCTTCCTTCATCCGCCGATTTTGCTGATTCCGGCGAGCTGGGCTCCGGCAACGGCGGCGAGGAACCGGCCAGAAC TCTCAAGAGGCCGCGCCTGGTTTGGACCCCGCAGCTCCACAAGCGGTTTGTTGACGCCGTGGCGCACCTTGGGATCAAGA ACGCGGTTCCGAAGACCATAATGCAGCTCATGAGCGTTGATGGGTTGACCAGGGAAAACGTCGCTAGCCACCTGCAGAAG TATCGTCTTTACCTCAAGCGCATGCAGGGGATTTCCGCCGGTGGTCCCGGCGGCGGCGGTGCAGGACCGGCAGGCTCTGC TGACCCTACTGACCACCTCTTTGCTAGCTCCCCTGTGCCGGCTCATTTCTTGCATCCTACTGCCCGGCCTAATTCCGATC ACTTCCTGCCGTTTGTGCCTGTGCCGGCTGCCCTCCACCACCACCATCAGCAGCAGCAACAGCAGCATCACTTGGCTGCG GCGGCGCAGTATCACCGGCCGGTGGGGCATTTCGGGTCGCCCCCGAATGGTCACTTTGAGAATCCCTTCCTGTCCAGGCA GCAGCAGCTTCATAGGATGGGGGCACCAGTGCACAACAACCCTGCTTTGTCTAGTTATGTGGAGGACATGGAATCTGCCA ATGCATCAGGAGGGAGGAAGGTTCTTACTTTGTTTCCAACAGGAGATGATTGA
Protein sequence (LotjaGi1g1v0658900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREDDSNWFVRWEEELPSPEELMPLSQTLITPDLAMAFDIRNSLTATINNNPQQQHQQQQQLQLQQQQQQQQQPPLSSNP SSLPSSADFADSGELGSGNGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK YRLYLKRMQGISAGGPGGGGAGPAGSADPTDHLFASSPVPAHFLHPTARPNSDHFLPFVPVPAALHHHHQQQQQQHHLAA AAQYHRPVGHFGSPPNGHFENPFLSRQQQLHRMGAPVHNNPALSSYVEDMESANASGGRKVLTLFPTGDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 310 | 310 | 8.2E-127 | – | |
| PANTHER | 1 | 310 | 310 | 8.2E-127 | – | |
| MobiDBLite | 51 | 88 | 38 | - | – | |
| MobiDBLite | 51 | 109 | 59 | - | – | |
| SUPERFAMILY | 52 | 85 | 34 | 8.11E-5 | – | |
| SUPERFAMILY | 107 | 167 | 61 | 2.96E-20 | ||
| Gene3D | 107 | 169 | 63 | 5.3E-31 | – | |
| ProSiteProfiles | 107 | 166 | 60 | 11.059 | ||
| TIGRFAM | 111 | 163 | 53 | 3.3E-24 | ||
| Pfam | 114 | 162 | 49 | 2.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0658900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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