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LotjaGi1g1v0663800.2

Overview

Field Value
Gene ID LotjaGi1g1v0663800
Transcript ID LotjaGi1g1v0663800.2
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:122537326..122544554) extracted from Lotus japonicus Gifu genome v1.2.

GGAAGAAAAAAATTAGTGTTGATTAAATGAAAACTTTGAAATATATTTTATATTATACTAAAATGATCAACTTGAAAACA TGATGTTTTTTCGCTTCAAAGATGTATTTTCTCAGTTGGTAACTGTGAGATTAATTTTCCACCTACACTCAAATATTAAA GTGGTATTCCTTTCGATCAAAAAAGTCAAAAAGCCTCGATATTTATCATCAACTTGTCACTTGTTAGGGTTTGTTGGTCT AATTTTCCATCGGTTTCTTCTTCTGGGTATTGCTTAAATCTCTAGAAACTTCATTTTTTCAGCTTGGTTTTGTTCAAAAT CACTTTTTTTATCTCTACCCTTTTCAATTTTTATCCATAGCAATCTTGGGTAGCTCCTCCTTTTCAAGTTCATGTTGCTC AGCTTTGATTTCACAAGGTGGGCCTTCAATTTTCCTTTTCAAAATTCAGTTTTGGTTTTTTGGTGCTGCTAAGGTTTTGG TTTTTGAGTTTCAAGTGATGCTGTTTTTTTTTTCTACTTCTGATGTTTTGCCGCCAATGTTTTGATAACATGTTTTTTGC TGTTTATCTTGATTCATGTTTCCTGAGCTTGCTGTTAGTCTGTATGAAAAATTCAATTTTTGTAGCTTGTTGAATTGTGG TTTCCTTGATGAGATTTTGCTTGCTGAGTTTTTGTTTTTTGATATTTTGAGGTGGGTTTGACTAAAGTTGTGTGCTTTAT GAAATTGGTTCAGGGCATCTTTGGATTAATGTTTTGGAGAAATATAAGATGATCGTTGATGTGCTGAGCATGGTTATTAA TGGGTAGTAGAAGTAGAACAGTTAATGCTAATAACACTGAGGACAGTAACAAGGTTGTGAACAGGATGCCAAGCTACGCT CCTCCTCCATTGCCTTCTACTTCTAGTTCCATGTAAATTTTCCAGTGCCCCTTCTGTTCCATGTTTTTGGTTTTTCTCAT GATTGGTCTTATAATAGGTTTCTGGGATCAAGTCAATATGTATAGGTACATGTTTGGAAATCCTTCTAGAATTGATTCTA GAGCCGGAATCAATTTTGGGAGAAGCTTCTGTGAGTAGCTTCTGGTGGACAGAATTGATTCTGAGGAAAAAGAAGTCTAT CCAAACAGGCTATACTATTTTTGTACAAGTCCTGTAATACTAGTAGGAGCAATTCATGTATTCATGTTATTGAAGAGCCT TTGCTGTTGACGTTAGGCCTTGTCGGTTGCAAGATTCCAGAGGAAAGCATGTAGTGTGAAAAAAACATCTTTATAATGTT TTAATTTTACTGGTTGTTGCTTATTCATTGATCCTTCTGTTGCGGACTGTCACCGTTTCTTTTAACTCTTAAAAGTTGAG AGTGCACAACCTTCTGAAAGCTTTTCTTAATTGGCGACTTAAAAAGATTGCTGTGACTTTTTGTGTTCAAATCATCTCAT GGATTTGTTGTTATATCTCGAGTAGCCAAGTTAGACTTTTCTTTAGCTTGAATAGGTGGATTTCACCAGTGTCGTCATAG CTCTCTGATCCTCCAGTGGATAATTTGGATATGCTTTTAATAACTCTTTTTTTACATGTTCTCATGCTTTTGGTGTTCAG GGGCATTGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTGGAGCCCTCGAACAATCTCTTGGATTTCGTATTG AAGATACCATGAATCTTAGCAGAAGTATGTTGCTCACTGTTTGATCTCTAACAGTTGGACTACCTTTTTTATGTCGTACT TCTTGTTACTGTGAAGTGTGGGCTGCTGTTTTATGAATTTAAGATCTTGTCTCGCATTCTCGTTGCTTATGTTGTTGTGC TTGCCAATGCTTTTTATTCAAAAGTGAATCATATCCTTTCCAATTACATTTGTTTGTAACTTGCTGCTAAAGTAGGCCTT CCATTCTATTTCTACTTCTCGGGGCTAAATTTTTTATTGCTATGAATGATGCTAAAATGTTTGTACCTCAAGGAAATCTT GGTTTTCTTGATTTTTCTTGTGGATCTTTGTCTTTCTGAGCATTACTTTGTGAATTCACCATGGCTTACTGTGTCTGATG TTGTATAATTTATATTTAAAATCTAATGAATCATATCTTCTCCAATGGTTTTCACTTGTTCCTAATCTGTTATTAACATG AGCCTTCATCAGATTTCTACCTACACTGTTCTAGAAGAAATTTGTGTTTCCTCAAGTGTGATCCTTCAAAAGCAATCAGA AGATATAGGATTATTGTTGGAATAAAATAACTAGATGTTAAACCAAAAACTGTTTCATTAACCTCACAGAAAACTCATTA AAAAGTAACTGAACAATGATAGAAATACATAGTATTAGAATAGTCGCCCCCCTCTTGTTGGCACTTAATCTAACCACCAT GACCCTTTTATTTGTATATTATGTTTCAGATCCTGTGTTCAATCAAATGAAATCAAATAGCCAGGCTCTTGGTGCTGATA TTCAGTTCGGTGCTTTGAGCAAGGTAAAATTATATCTTCTTTATGCGGTTATGTGCTTTCAATAATCAATTAACTGCAAT ATGATGAAGTCCTGGATTTCTCTTGCATGTAAGATACAGTCAATTGCAACCTCGGATAATAACCTCTCTGCTGCAATTGC GGGGTCTCAGATGATGCCATTACAGAAAGACTCGCAACCAAATCTGGCTTCAACATCTGGAGGTCATCGCGAAAACTGGG GCGAGTCCAACACGGGTGATGCGAGCCCTACATCAACAGATGATACAGATGATAAAAATCAAATGGTGATTATTTTACTT TAATTATACAGTTTATTCAGCATCTGTAATTCAATCTATTCATCGATTGAAATCAAATGCCTATTGGTGATGCCCCCTGG AGTTATGATGTGATATTGGGGATAATTTTTCCTTCTAATTGTTCATTGTTATCAAACTTTTAAGAGCATGTTATTCATAC TTTAAAAATGGTTCTTCATTGTTATTTTGCAGGTTGAAAGGGGTGAATCCAGTGATAGATCAAAAGATAAAACAGATCAA AAGGTTATATAAAGTAATCATATTCACATAACATAAGCTTTTGGTACTATATGTTAAATTTTTGTGTTCCATTCAGACAT TAAGACGGCTGGCTCAAAATCGTGAAGCTGCTAGAAAAAGCCGACTGAGGAAAAAGGTAGGGCCTTTTGTTAATTGTAAA TGAACTTGTAAACTTATTCCTTCTGTTGTAGCTTTGTTAGTTGTTAAATGTAGCATTGCTACATTGTTGACAAATGACAA CTTTAAATATTTTGCATGCTTTGATTTCTTATTCTTTAAACCCTAATTTCTTTTCATTCAGGCATATGTGCAACAGTTAG AGAGTAGTAGGTTGAAACTTACATTGTTGACAAATGACAACTTTAAATATTTTGCATGCTTTGATTTCTTATTCTTTAAA CCCTTATTTCTTTTCATTCAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACACAACTGGAGCAAGAGCT CCAGCGAGCTCGCCAGCAGGTTTGGTTGTGTTAATTTATTCATTTTATCCATTCAAAGTTTTGTTCTCATCCTTTTGAAA CCCTTTTTTTCGTTAGCTTACATTAATCTAGTTATGTTACTACAGCCTCTGTGACAATTTGGTTATTAATCTTTTTCCAG GGAATATTTATTTCAAGCACCGGAGAGCAGGCCCATTCAATGAGTGGAAATGGTATTAATCTTCTTTTACCTCTAATCGT ATGCCTCAAGCTTGAAAATGTTTATTGCATTGAAATCCTTTCTACTTAAGCACTTATTGTACATGATAGAATATGGTTTT ACTTGATGTGATTCGGACAGCATCATGTGTATGTGCATAAGTGCAAGCCTGTTATATGATTTTAAACTCTTACAACATAG CACCACATGGTGGTCATTGGCTGGGATTTTCCGTATGTTTCTGTTATGTTTCAGATCATTAATCCATTGATTAATCATCT TGGTATGCAGGTGCTATAGCATTTGATGTTGAATATGCGCGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAG GGCTGCTATCAATTCTCATGCTGGAGACATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGACGATCTCT TCAGGCTGAAAGGTATCGCTGCAAAAGCTGATGTTTTTCACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGT TTCATGTGGATTGGAGGCTTTCGCTCTTCAGAAATTCTCAAGGTGAGAATTTTTTTGTTTATTTATGCTTTATGGTTAGA TATGATTTTTTCCTGGTCAACAATGTGCTGAAGTACAAGTGTGGCAATCAATTTATTATGATTTCTCAAAAACATTTTGT GCTTGTGTTCTGTTCATCCAGTGTGTGTATGGAAGTTCCGTAGCAATCTCTGTAAGAACAGTCTGCTTTACCTTTTGCTA ATGTTTAACTAATTAATTATCTTTAAAAGGTTTGGGGAATGGTCAATCATATGAAGCTGTTTTTCATGCATCTCTCAAGC ATGTGATTCATTTCCGGTGTACATACTTCTGTGTAAACGTGCTTTTAGTTCACAATAAAACTGACATGTGTTGTTATTGT ATGGTACTGAATGATGAAATTGGATCACTTGATGTGCTAGAGGAGGAATAATATATATTGTAATGCTAACAATAAACATT TTTTTTGTGCGCTGTTTTATGAACTGTGAGAGTTTGAAGACGATGGTTGAAAATAGCTAGGTGGTTGTATGAGAAGACAT TTTCCTTGTTCATTTTTCATCTTGCCCTAGATCTTTGATAGATAAAGAGGTATTATAAATCTATCTTTGTGCCGATATGC TTTTTTCTCTATTTTATGGGATGGGGGGGGGGGGATTCCAACAAGTCCAATGGAAATTAACTAAGACAATGGTTCAGACC TTTTGAATGTTCTTCAGAAGTTTTAATTCCATAATCATTCAATCGAAATGTGGAAACAATTTTAACGGGGACTGTTTTCC CCATCCTTCTAGTTTGGTTTGAAAATTACTTCCCTAGTATTGAACACCCACCACATCCTCCGCACTATGAATATATATGA TATATAAAGTGAGGGAAAAGCCCAGGGGATTCTAAATATACAGCAATTCAGCCCCTATGTTCTTGAAGTTGTTGAAAAAA AAAATCCAAGATATTCTTGAGGAACCTTATCTTGATACCAAGTTATTCAGGTTTTGAATTATCAAGTTCATTCCCTTTTG TCATGTGATGCCATCTAAAACTGGGTTGACACTATTTCAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAAT TGATGGGCATCTACAACTTGCAACAGTCATCCCAACAGGCCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAA TCACTATCTGAGACCTTGGCTAATGGTTCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAAT GGCTATGGCGATGGGAAAGCTAGGTACCCTCGCTGGATTTCTTCGCCAGGTAAACTAGCTGATTGTATCTGCATCTGTTT CCAATTTCTCAAACTTAAATCTTTTTGAAATGATGAGAAATCAGGAGTTTAGAACTGAATTTTAGATGGACATAGAAATA GAACCAAGTGTTTTTTTGTTTCTCAGTTATTTTTAAGTAAAAGAAGTTTTTACTTTTTATTCCATTTGGAAAAAAAGATC TATTCATTTTGTATAAAGTCGGATGCAAACTATTCTAGATATAGGCCACGTTTGGAAGAGTTTATTCGAGTTTATCTTAT AGTAAATGTTTTGGAGAACATATATAAAATATAAATAGCTTATGACCTATCGTTAAACTGTTTTAAGCTTATTTTCATAA GCTACTAAGTTGAGCTTATGAATAAGTGCTTATATATGCACCTATAACATATTTTGAGCTTATTTCAATAAGCTTCTCAA ATTAGCTTATGAATAAATGCTTACTCAATAAGTGCTTAATTAAGTTGTTTACCCAAAAATGCACCTTAGTACAAATGTGA TTGATTGATTCATCAGAAATGAAAGCAGTAGTTACAATATTTGTCGATTCACTTTTTCATGTTACTAGGCTGATAATCTG CGGCAGCAAACATTGCAACAAATGCTTAGGATATTAACAACTAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTA TTTCTCCCGGCTGCGAGCCCTGAGTTCTCTCTGGCTGGCCAGGCCACGGGAGTGAAGTTTATCAAGGCTCCATTCATGAA GTTTTTTCAAGCCAGATCACATTCAACATGAGGATTGAATCTTCTGCATTAAATCAGTTAATTGGAAGCTGGTGTCCTTT GGCAATGAATTCCTCTAGAAGCCTAGCTGTGCTGTAAACATTAGATAATGTGATTACTCTTCTCTCCACCTGATGCTGGT GTGGTGCAACATTTTTATTTAAGCTTTCCCTTGCTTTGAAAATAGTCTCAATAATTTGATTGTGTAGGTGTTTGATAGAT AGAGGTGAAGGGGAAAATGTAGAATAGTGTTTGTATTTAGGTTACAGCTGGTAATTGTATTTCAGAAATCAGCTTATTTG AGGGAGATTTTCCTCTCTTTTTGTATCTTTTCCTGCTTAATGGTTTGTGGTTGCACATATGACTCCATGGACCTGTGTGC TGGTGAGCTGGTCTATGTTTATATGTATTCGTTTTATCTTGCTACATTAGAAAGACATCACAATGAACCAAAATAAAAAA AAGCAAGACATTGCTAACTAGTAACTGAATTTGTCTCATGACAAACATCTTATGCAGTCTATAATATATACCACAATGGT GCGGGCTAAATTCAATTTGCATGCATGTTTACATATAATTAGCATGGATCATTGGGGTTTTACTCACAATAAGAGGAGGG CAGGATCCATCTGTGTAAATATCGATGATGATTGGAGTTAGTATGCATGTACCAAAGGGCAGTTGGTTGTTTATGTGGTA CATGTTTGATTTTTCTTAAGTTCTCGGGTTTGAGTCTTGTGAATGGAAAAAAATTCGTTGGGAGAGCTAGCTCCACAATG ATCCTTGGGACGGATCCAAGAATACATAAAATGGGGCAACCGCCTCTCCAAGAGATTTTTTCCCTCAATATAATGATATT CAAATATAGTAGTCGCCCTCATGAACCCC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0663800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTAGTAGAAGTAGAACAGTTAATGCTAATAACACTGAGGACAGTAACAAGGTTGTGAACAGGATGCCAAGCTACGC TCCTCCTCCATTGCCTTCTACTTCTAGTTCCATGGGCATTGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTG GAGCCCTCGAACAATCTCTTGGATTTCGTATTGAAGATACCATGAATCTTAGCAGAAATCCTGTGTTCAATCAAATGAAA TCAAATAGCCAGGCTCTTGGTGCTGATATTCAGTTCGGTGCTTTGAGCAAGTCAATTGCAACCTCGGATAATAACCTCTC TGCTGCAATTGCGGGGTCTCAGATGATGCCATTACAGAAAGACTCGCAACCAAATCTGGCTTCAACATCTGGAGGTCATC GCGAAAACTGGGGCGAGTCCAACACGGGTGATGCGAGCCCTACATCAACAGATGATACAGATGATAAAAATCAAATGGTT GAAAGGGGTGAATCCAGTGATAGATCAAAAGATAAAACAGATCAAAAGACATTAAGACGGCTGGCTCAAAATCGTGAAGC TGCTAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACACAACTGGAGC AAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCACCGGAGAGCAGGCCCATTCAATGAGTGGAAATGGT GCTATAGCATTTGATGTTGAATATGCGCGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAGGGCTGCTATCAA TTCTCATGCTGGAGACATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGACGATCTCTTCAGGCTGAAAG GTATCGCTGCAAAAGCTGATGTTTTTCACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATT GGAGGCTTTCGCTCTTCAGAAATTCTCAAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGCAT CTACAACTTGCAACAGTCATCCCAACAGGCCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTG AGACCTTGGCTAATGGTTCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAATGGCTATGGCG ATGGGAAAGCTAGGTACCCTCGCTGGATTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTGCAACAAATGCTTAG GATATTAACAACTAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCCCTGAGTTCTC TCTGGCTGGCCAGGCCACGGGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0663800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSRSRTVNANNTEDSNKVVNRMPSYAPPPLPSTSSSMGIEATNVHPSRISEFGALEQSLGFRIEDTMNLSRNPVFNQMK SNSQALGADIQFGALSKSIATSDNNLSAAIAGSQMMPLQKDSQPNLASTSGGHRENWGESNTGDASPTSTDDTDDKNQMV ERGESSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQAHSMSGNG AIAFDVEYARWLEEHNRHTNELRAAINSHAGDIELRTIVDNFMTQFDDLFRLKGIAAKADVFHILSGMWKTPAERCFMWI GGFRSSEILKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMA MGKLGTLAGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 39 39 - –
MobiDBLite
mobidb-lite
1 20 20 - –
PANTHER
PTHR45693
33 461 429 1.5E-233 –
PANTHER
PTHR45693:SF15
33 461 429 1.5E-233 –
MobiDBLite
mobidb-lite
115 148 34 - –
MobiDBLite
mobidb-lite
115 178 64 - –
MobiDBLite
mobidb-lite
149 178 30 - –
SMART
SM00338
172 235 64 3.2E-8
IPR004827
ProSiteProfiles
PS50217
174 218 45 9.415
IPR004827
Pfam
PF00170
176 216 41 8.5E-7
IPR004827
SUPERFAMILY
SSF57959
176 219 44 6.88E-7 –
Gene3D
G3DSA:1.20.5.170
176 223 48 1.9E-9 –
CDD
cd14708
176 228 53 1.20214E-22 –
ProSitePatterns
PS00036
179 194 16 -
IPR004827
Coils
Coil
195 222 28 - –
ProSiteProfiles
PS51806
241 458 218 33.465
IPR025422
Pfam
PF14144
258 333 76 2.1E-29
IPR025422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0663800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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