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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0663800 |
| Transcript ID | LotjaGi1g1v0663800.4 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122537745..122544355) extracted from Lotus japonicus Gifu genome v1.2.
TATTTATCATCAACTTGTCACTTGTTAGGGTTTGTTGGTCTAATTTTCCATCGGTTTCTTCTTCTGGGTATTGCTTAAAT CTCTAGAAACTTCATTTTTTCAGCTTGGTTTTGTTCAAAATCACTTTTTTTATCTCTACCCTTTTCAATTTTTATCCATA GCAATCTTGGGTAGCTCCTCCTTTTCAAGTTCATGTTGCTCAGCTTTGATTTCACAAGGTGGGCCTTCAATTTTCCTTTT CAAAATTCAGTTTTGGTTTTTTGGTGCTGCTAAGGTTTTGGTTTTTGAGTTTCAAGTGATGCTGTTTTTTTTTTCTACTT CTGATGTTTTGCCGCCAATGTTTTGATAACATGTTTTTTGCTGTTTATCTTGATTCATGTTTCCTGAGCTTGCTGTTAGT CTGTATGAAAAATTCAATTTTTGTAGCTTGTTGAATTGTGGTTTCCTTGATGAGATTTTGCTTGCTGAGTTTTTGTTTTT TGATATTTTGAGGTGGGTTTGACTAAAGTTGTGTGCTTTATGAAATTGGTTCAGGGCATCTTTGGATTAATGTTTTGGAG AAATATAAGATGATCGTTGATGTGCTGAGCATGGTTATTAATGGGTAGTAGAAGTAGAACAGTTAATGCTAATAACACTG AGGACAGTAACAAGGTTGTGAACAGGATGCCAAGCTACGCTCCTCCTCCATTGCCTTCTACTTCTAGTTCCATGTAAATT TTCCAGTGCCCCTTCTGTTCCATGTTTTTGGTTTTTCTCATGATTGGTCTTATAATAGGTTTCTGGGATCAAGTCAATAT GTATAGGTACATGTTTGGAAATCCTTCTAGAATTGATTCTAGAGCCGGAATCAATTTTGGGAGAAGCTTCTGTGAGTAGC TTCTGGTGGACAGAATTGATTCTGAGGAAAAAGAAGTCTATCCAAACAGGCTATACTATTTTTGTACAAGTCCTGTAATA CTAGTAGGAGCAATTCATGTATTCATGTTATTGAAGAGCCTTTGCTGTTGACGTTAGGCCTTGTCGGTTGCAAGATTCCA GAGGAAAGCATGTAGTGTGAAAAAAACATCTTTATAATGTTTTAATTTTACTGGTTGTTGCTTATTCATTGATCCTTCTG TTGCGGACTGTCACCGTTTCTTTTAACTCTTAAAAGTTGAGAGTGCACAACCTTCTGAAAGCTTTTCTTAATTGGCGACT TAAAAAGATTGCTGTGACTTTTTGTGTTCAAATCATCTCATGGATTTGTTGTTATATCTCGAGTAGCCAAGTTAGACTTT TCTTTAGCTTGAATAGGTGGATTTCACCAGTGTCGTCATAGCTCTCTGATCCTCCAGTGGATAATTTGGATATGCTTTTA ATAACTCTTTTTTTACATGTTCTCATGCTTTTGGTGTTCAGGGGCATTGAAGCAACTAATGTTCATCCTTCTCGAATTTC TGAATTTGGAGCCCTCGAACAATCTCTTGGATTTCGTATTGAAGATACCATGAATCTTAGCAGAAGTATGTTGCTCACTG TTTGATCTCTAACAGTTGGACTACCTTTTTTATGTCGTACTTCTTGTTACTGTGAAGTGTGGGCTGCTGTTTTATGAATT TAAGATCTTGTCTCGCATTCTCGTTGCTTATGTTGTTGTGCTTGCCAATGCTTTTTATTCAAAAGTGAATCATATCCTTT CCAATTACATTTGTTTGTAACTTGCTGCTAAAGTAGGCCTTCCATTCTATTTCTACTTCTCGGGGCTAAATTTTTTATTG CTATGAATGATGCTAAAATGTTTGTACCTCAAGGAAATCTTGGTTTTCTTGATTTTTCTTGTGGATCTTTGTCTTTCTGA GCATTACTTTGTGAATTCACCATGGCTTACTGTGTCTGATGTTGTATAATTTATATTTAAAATCTAATGAATCATATCTT CTCCAATGGTTTTCACTTGTTCCTAATCTGTTATTAACATGAGCCTTCATCAGATTTCTACCTACACTGTTCTAGAAGAA ATTTGTGTTTCCTCAAGTGTGATCCTTCAAAAGCAATCAGAAGATATAGGATTATTGTTGGAATAAAATAACTAGATGTT AAACCAAAAACTGTTTCATTAACCTCACAGAAAACTCATTAAAAAGTAACTGAACAATGATAGAAATACATAGTATTAGA ATAGTCGCCCCCCTCTTGTTGGCACTTAATCTAACCACCATGACCCTTTTATTTGTATATTATGTTTCAGATCCTGTGTT CAATCAAATGAAATCAAATAGCCAGGCTCTTGGTGCTGATATTCAGTTCGGTGCTTTGAGCAAGGTAAAATTATATCTTC TTTATGCGGTTATGTGCTTTCAATAATCAATTAACTGCAATATGATGAAGTCCTGGATTTCTCTTGCATGTAAGATACAG TCAATTGCAACCTCGGATAATAACCTCTCTGCTGCAATTGCGGGGTCTCAGATGATGCCATTACAGAAAGACTCGCAACC AAATCTGGCTTCAACATCTGGAGGTCATCGCGAAAACTGGGGCGAGTCCAACACGGGTGATGCGAGCCCTACATCAACAG ATGATACAGATGATAAAAATCAAATGGTGATTATTTTACTTTAATTATACAGTTTATTCAGCATCTGTAATTCAATCTAT TCATCGATTGAAATCAAATGCCTATTGGTGATGCCCCCTGGAGTTATGATGTGATATTGGGGATAATTTTTCCTTCTAAT TGTTCATTGTTATCAAACTTTTAAGAGCATGTTATTCATACTTTAAAAATGGTTCTTCATTGTTATTTTGCAGGTTGAAA GGGGTGAATCCAGTGATAGATCAAAAGATAAAACAGATCAAAAGGTTATATAAAGTAATCATATTCACATAACATAAGCT TTTGGTACTATATGTTAAATTTTTGTGTTCCATTCAGACATTAAGACGGCTGGCTCAAAATCGTGAAGCTGCTAGAAAAA GCCGACTGAGGAAAAAGGTAGGGCCTTTTGTTAATTGTAAATGAACTTGTAAACTTATTCCTTCTGTTGTAGCTTTGTTA GTTGTTAAATGTAGCATTGCTACATTGTTGACAAATGACAACTTTAAATATTTTGCATGCTTTGATTTCTTATTCTTTAA ACCCTAATTTCTTTTCATTCAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACATTGTTGACAAATGACA ACTTTAAATATTTTGCATGCTTTGATTTCTTATTCTTTAAACCCTTATTTCTTTTCATTCAGGCATATGTGCAACAGTTA GAGAGTAGTAGGTTGAAACTTACACAACTGGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGTTTGGTTGTGTTAATTTAT TCATTTTATCCATTCAAAGTTTTGTTCTCATCCTTTTGAAACCCTTTTTTTCGTTAGCTTACATTAATCTAGTTATGTTA CTACAGCCTCTGTGACAATTTGGTTATTAATCTTTTTCCAGGGAATATTTATTTCAAGCACCGGAGAGCAGGCCCATTCA ATGAGTGGAAATGGTATTAATCTTCTTTTACCTCTAATCGTATGCCTCAAGCTTGAAAATGTTTATTGCATTGAAATCCT TTCTACTTAAGCACTTATTGTACATGATAGAATATGGTTTTACTTGATGTGATTCGGACAGCATCATGTGTATGTGCATA AGTGCAAGCCTGTTATATGATTTTAAACTCTTACAACATAGCACCACATGGTGGTCATTGGCTGGGATTTTCCGTATGTT TCTGTTATGTTTCAGATCATTAATCCATTGATTAATCATCTTGGTATGCAGGTGCTATAGCATTTGATGTTGAATATGCG CGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAGGGCTGCTATCAATTCTCATGCTGGAGACATTGAACTTCG TACCATTGTTGACAATTTCATGACACAATTTGACGATCTCTTCAGGCTGAAAGGTATCGCTGCAAAAGCTGATGTTTTTC ACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCTTCAGAAATTCTC AAGGTGAGAATTTTTTTGTTTATTTATGCTTTATGGTTAGATATGATTTTTTCCTGGTCAACAATGTGCTGAAGTACAAG TGTGGCAATCAATTTATTATGATTTCTCAAAAACATTTTGTGCTTGTGTTCTGTTCATCCAGTGTGTGTATGGAAGTTCC GTAGCAATCTCTGTAAGAACAGTCTGCTTTACCTTTTGCTAATGTTTAACTAATTAATTATCTTTAAAAGGTTTGGGGAA TGGTCAATCATATGAAGCTGTTTTTCATGCATCTCTCAAGCATGTGATTCATTTCCGGTGTACATACTTCTGTGTAAACG TGCTTTTAGTTCACAATAAAACTGACATGTGTTGTTATTGTATGGTACTGAATGATGAAATTGGATCACTTGATGTGCTA GAGGAGGAATAATATATATTGTAATGCTAACAATAAACATTTTTTTTGTGCGCTGTTTTATGAACTGTGAGAGTTTGAAG ACGATGGTTGAAAATAGCTAGGTGGTTGTATGAGAAGACATTTTCCTTGTTCATTTTTCATCTTGCCCTAGATCTTTGAT AGATAAAGAGGTATTATAAATCTATCTTTGTGCCGATATGCTTTTTTCTCTATTTTATGGGATGGGGGGGGGGGGATTCC AACAAGTCCAATGGAAATTAACTAAGACAATGGTTCAGACCTTTTGAATGTTCTTCAGAAGTTTTAATTCCATAATCATT CAATCGAAATGTGGAAACAATTTTAACGGGGACTGTTTTCCCCATCCTTCTAGTTTGGTTTGAAAATTACTTCCCTAGTA TTGAACACCCACCACATCCTCCGCACTATGAATATATATGATATATAAAGTGAGGGAAAAGCCCAGGGGATTCTAAATAT ACAGCAATTCAGCCCCTATGTTCTTGAAGTTGTTGAAAAAAAAAATCCAAGATATTCTTGAGGAACCTTATCTTGATACC AAGTTATTCAGGTTTTGAATTATCAAGTTCATTCCCTTTTGTCATGTGATGCCATCTAAAACTGGGTTGACACTATTTCA GCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCAACAGTCATCCCAACAGG CCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACCTTGGCTAATGGTTCACCCAACCCA TCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAATGGCTATGGCGATGGGAAAGCTAGGTACCCTCGCTGGATT TCTTCGCCAGGTAAACTAGCTGATTGTATCTGCATCTGTTTCCAATTTCTCAAACTTAAATCTTTTTGAAATGATGAGAA ATCAGGAGTTTAGAACTGAATTTTAGATGGACATAGAAATAGAACCAAGTGTTTTTTTGTTTCTCAGTTATTTTTAAGTA AAAGAAGTTTTTACTTTTTATTCCATTTGGAAAAAAAGATCTATTCATTTTGTATAAAGTCGGATGCAAACTATTCTAGA TATAGGCCACGTTTGGAAGAGTTTATTCGAGTTTATCTTATAGTAAATGTTTTGGAGAACATATATAAAATATAAATAGC TTATGACCTATCGTTAAACTGTTTTAAGCTTATTTTCATAAGCTACTAAGTTGAGCTTATGAATAAGTGCTTATATATGC ACCTATAACATATTTTGAGCTTATTTCAATAAGCTTCTCAAATTAGCTTATGAATAAATGCTTACTCAATAAGTGCTTAA TTAAGTTGTTTACCCAAAAATGCACCTTAGTACAAATGTGATTGATTGATTCATCAGAAATGAAAGCAGTAGTTACAATA TTTGTCGATTCACTTTTTCATGTTACTAGGCTGATAATCTGCGGCAGCAAACATTGCAACAAATGCTTAGGATATTAACA ACTAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCCCTGAGTTCTCTCTGGCTGGC CAGGCCACGGGAGTGAAGTTTATCAAGGCTCCATTCATGAAGTTTTTTCAAGCCAGATCACATTCAACATGAGGATTGAA TCTTCTGCATTAAATCAGTTAATTGGAAGCTGGTGTCCTTTGGCAATGAATTCCTCTAGAAGCCTAGCTGTGCTGTAAAC ATTAGATAATGTGATTACTCTTCTCTCCACCTGATGCTGGTGTGGTGCAACATTTTTATTTAAGCTTTCCCTTGCTTTGA AAATAGTCTCAATAATTTGATTGTGTAGGTGTTTGATAGATAGAGGTGAAGGGGAAAATGTAGAATAGTGTTTGTATTTA GGTTACAGCTGGTAATTGTATTTCAGAAATCAGCTTATTTGAGGGAGATTTTCCTCTCTTTTTGTATCTTTTCCTGCTTA ATGGTTTGTGGTTGCACATATGACTCCATGGACCTGTGTGCTGGTGAGCTGGTCTATGTTTATATGTATTCGTTTTATCT TGCTACATTAGAAAGACATCACAATGAACCAAAATAAAAAAAAGCAAGACA
CDS sequence (LotjaGi1g1v0663800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGTAGAAGTAGAACAGTTAATGCTAATAACACTGAGGACAGTAACAAGGTTGTGAACAGGATGCCAAGCTACGC TCCTCCTCCATTGCCTTCTACTTCTAGTTCCATGGGCATTGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTG GAGCCCTCGAACAATCTCTTGGATTTCGTATTGAAGATACCATGAATCTTAGCAGAAATCCTGTGTTCAATCAAATGAAA TCAAATAGCCAGGCTCTTGGTGCTGATATTCAGTTCGGTGCTTTGAGCAAGTCAATTGCAACCTCGGATAATAACCTCTC TGCTGCAATTGCGGGGTCTCAGATGATGCCATTACAGAAAGACTCGCAACCAAATCTGGCTTCAACATCTGGAGGTCATC GCGAAAACTGGGGCGAGTCCAACACGGGTGATGCGAGCCCTACATCAACAGATGATACAGATGATAAAAATCAAATGGTT GAAAGGGGTGAATCCAGTGATAGATCAAAAGATAAAACAGATCAAAAGACATTAAGACGGCTGGCTCAAAATCGTGAAGC TGCTAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACACAACTGGAGC AAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCACCGGAGAGCAGGCCCATTCAATGAGTGGAAATGGT GCTATAGCATTTGATGTTGAATATGCGCGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAGGGCTGCTATCAA TTCTCATGCTGGAGACATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGACGATCTCTTCAGGCTGAAAG GTATCGCTGCAAAAGCTGATGTTTTTCACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATT GGAGGCTTTCGCTCTTCAGAAATTCTCAAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGCAT CTACAACTTGCAACAGTCATCCCAACAGGCCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTG AGACCTTGGCTAATGGTTCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAATGGCTATGGCG ATGGGAAAGCTAGGTACCCTCGCTGGATTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTGCAACAAATGCTTAG GATATTAACAACTAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCCCTGAGTTCTC TCTGGCTGGCCAGGCCACGGGAGTGA
Protein sequence (LotjaGi1g1v0663800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSRSRTVNANNTEDSNKVVNRMPSYAPPPLPSTSSSMGIEATNVHPSRISEFGALEQSLGFRIEDTMNLSRNPVFNQMK SNSQALGADIQFGALSKSIATSDNNLSAAIAGSQMMPLQKDSQPNLASTSGGHRENWGESNTGDASPTSTDDTDDKNQMV ERGESSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQAHSMSGNG AIAFDVEYARWLEEHNRHTNELRAAINSHAGDIELRTIVDNFMTQFDDLFRLKGIAAKADVFHILSGMWKTPAERCFMWI GGFRSSEILKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMA MGKLGTLAGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 33 | 461 | 429 | 1.5E-233 | – | |
| PANTHER | 33 | 461 | 429 | 1.5E-233 | – | |
| MobiDBLite | 115 | 148 | 34 | - | – | |
| MobiDBLite | 115 | 178 | 64 | - | – | |
| MobiDBLite | 149 | 178 | 30 | - | – | |
| SMART | 172 | 235 | 64 | 3.2E-8 | ||
| ProSiteProfiles | 174 | 218 | 45 | 9.415 | ||
| Pfam | 176 | 216 | 41 | 8.5E-7 | ||
| SUPERFAMILY | 176 | 219 | 44 | 6.88E-7 | – | |
| Gene3D | 176 | 223 | 48 | 1.9E-9 | – | |
| CDD | 176 | 228 | 53 | 1.20214E-22 | – | |
| ProSitePatterns | 179 | 194 | 16 | - | ||
| Coils | 195 | 222 | 28 | - | – | |
| ProSiteProfiles | 241 | 458 | 218 | 33.465 | ||
| Pfam | 258 | 333 | 76 | 2.1E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0663800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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