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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0671300 |
| Transcript ID | LotjaGi1g1v0671300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2; TrEMBL-Plants: tr|A0A059DI46|A0A059DI46_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0671300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123535049..123538650) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCGACACATTCTGCTCCGACTGCAAGCGCCAGACGGAGGTGGTCTTCGATCACTCAGCCGGCGACACAGTCTGCTC CGAATGCGGCCTCGTCCTCGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACGTTCGCAAACGAGGCCGGCGATA ACGACCCTGTTCGTGTTGGAGGGCCCTCTAACCCGCTTCTCACTGACGGTGGCCTCTCCACTGTTATTGCTAAGACCAAC GGCTCCTCCGGTGAGTTCCTCTCGGCTTCCCTCGGCCGCTGGCAGAATCGCGGTTCGAACCCTGATCGCGGTCTTATCAT GGCGTTTAAGACCATTGCTACCATGTCTGATAGGTAATGGCAAATTGGCAATGCAGCCAAACAGAATAATCTGAAATTCC ATGAATTTAACCTAGTGAATTGATATGTACTGTGTGCTGCATTTCATTTCTTGAATTATCATGATTGTTATCTGTGTAAG TTAAGCATTGTTGTATGGAAACTATCATGTGCTGCATTGTTGTATGATTGAGTTATTAACTCATGTGAGCTGATAAATTT TTCAGGTTGGGACTCGTTGCGACGATCAAGGTATTACATTTTCTCGTATCGGATAGCTTTATACTTGGATTCATTGCATG TCAAGTTTCATGAATTTTTTCATATGGACTATATATGTGATTGATTTTGATTGACTCTATTGTTGTGATATTTTGATAAA TCATGTAGTTTTGGGCTACATTCCTGTTTGACATTAGACTGTAATGGTTTTAATCCGGAAGAAGGGGAGGCTATAAGGTT ACTTCTGGTGTGGTTTGTTTGCATCATTTAACCTTTGAACTTCTTTGGGAATTTCTGGGGAGGTGCTGGGAGCAAAACAT TAAAAGTTATGTTGAAAATTTTATATGTATGGTTTGTAATTTGTACGTTGATTGCTAAGGAATTGGTGAAACTTCACCTG GCATGATGTTTTCATAAAGCAAGTAATGTGATGACTGGATGCTAACTGACTGAGAGAAAGGATCAGTTTTTCATGCCCTC CCATTATTTCAAGCTTTTCAAAAATTTGTATAGTCCTTGCATCATGTTGGTTGCTCCTTGAAACAATTGTTTTGGTTTTT CTTTCTCATCTTTAATTTCAAATTTCATGAAAAGTTTGTATTTTTACTCCTGTTATGCAATCAATTTGAAGGATCGGGCT AATGAGATATATAAGCGGGTTGAAGATCAGAAGTCTAGCAGAGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTA CATAGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGGTACATGCTATGATTTTCTTAACATAGATGCTTCTAGAT CTATCATTCCCTGTATAAACAAGCGTTCCTGAACTGATGGATTTCAAATAGAGATTTGCTCTGTTGCCAATGGAGCCACC AAGAAGGAAATTGGCCGAGCAAAAGAGTACATAGTGAAACAACTGGGTTTGGAGAACGGTCAATCTGTAGAGATGGGAAC AATACATGCTGGGGACTTTATGGTAAGTGTTCTTCATTGATGTGTACTTCTGCAGCACAACTGGATATTTTAATCAATGA CTTAGCTGACTCACATTATTTTTCTATCACTAACTTCAGAGGCGATTTTGTTCTAATCTTGGTATGAATAATCAAGCTGT TAAAGCTGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTTGATATAAGGTAAATTTAGTTTGTCTTGTATTTCTTTAGAC TCCAGAGTATAAAATAGATGTTCGCTGCTAAAGGTTAGCTTGTCGTATGTATTTTTTCATACTAATACAAGATGTGAGTA CAGTAATTTATGAATTCAGTAAAAGCTAGTGCCTCTTCTGGTAGGAAATTTAGATGGAAAAAGTGAGAAGTCTAAGCAGT GTTTCTGTAATAAAATGAACCAACAATATCAGCCTTAGATTAGGATAAATATTCTAGAGTCTAGACTGTGAGATTAGGTT TAGATAACTTTGCCCTTTTGATTGTGGACTAGAAACCTTTGGCTCCTTCAAGTTTTATGCTTCTACCTGTGGGATAAATG GAAACCATGAGGGGTGCCGAGCATGTTTGTGAACAGGGGCAGCTGTGAGGGGCGTGTGACATGCTTGAGAAAAGTGCAAA CTCTGAAGTGTATGTTTGCATGATAAGTGAAGGCTTGGTACATGACGATATTATTATGGGTTACCTTGAATTTAAACTTC TTTTCCATTTAACTAGGAACTAGGCACGGGGTGAGTTACAGGATTAGAACTTCTATTGCACACATATAGGCACATATTGT TTGATTGATGCATTGGACATTTGAATGGTACAAAAAATATTCACTGTTCTCTGCATGGTTACATTGTCATGTTTTTAGGT TTCATTATCATAATTCATAAACTTGCAGTATTGACAATAATATATTAACTATCCCACTTACCCAACCCACCTTAAATTAT TTGGTTGAGGCTGACATTGTCCTATGTGAGAGAATAGGTCAAAGTGAGCCCGGATGGGTTACTCAGCCCATTCCTTTTAC ATATAATATTTAGTATTTATAATTTTCTATTATTTAATGGTCTAACCTCATTTTAACATTTTACTTAGGGTGTTTGAATT TAGCCTTCTTCGAATAGGGAGTAAAAGATACTACATATATTGTGGGAAATCATAATTTATATGATACATTTACTAATTAA ATGAACAATTATTATTATATGCTTGTTTCATTATCTTATTTAGCTTATATTTCTAGTAAACCCTGTCTTATCATTTGTTA CACCCTATCTTATTCAGATCTGCGGATCACTGGGTTTCATAGGGTCTTTGGTCGGGTTCACATTAAAAAATTGACTCCCT AAAATTTAGGATTGGGTGGGGGACCAGTAAAATTCATCAAAATCCGTCCCACAAACACCTTATATTTCACTGCACTTTTA GTTTGTACTTTGTATGACTTCTCTTTTTTCATAATCTTCAGATGGATGCTATAATATTCTTATGATTGATACTAATAACA TCTTTAATTTGCCAGGAGGAGTCCCATATCAATTGCTGCAGCTGTTATATACATCATAACTCAACTTTCGGATGATAAAA AACCTCTCAAAGGTCTGTGACATTTCCTAGAGGAAAACACGAAAGCATGGAATACCAAAAATGGATTGATTACGTTAATT GTTTATGCAAATTGCCTCTCCATTTTCTTATATGTTGTTGTGGTGATAGTTTTTATTTGGAATTAAATTTGATTGTAAGA ATTATTCGAATATTTGCTGCTCTTTATTATAGGAGTTAGAGCCCCGTTTGGATACATACATATTAGAGCTTATCTACTAG AAAAACACTAGATAAGCTTCAATAAGTGCTTTGTTTTGCATTCAAACGGGTTCTTACTTGCTAAGCTAAAAAAAGCATGT ATGTATCTGACCTATTGCGTTTTTGCAGATATATCAGTAGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAA GGATCTTTACCCCCATGTTTCGAAAATAATACCAAACTGGTATGCAAAAGAAGAGGATTTAAAGAACCTTTGCAGCCCTT GA
CDS sequence (LotjaGi1g1v0671300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGACACATTCTGCTCCGACTGCAAGCGCCAGACGGAGGTGGTCTTCGATCACTCAGCCGGCGACACAGTCTGCTC CGAATGCGGCCTCGTCCTCGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACGTTCGCAAACGAGGCCGGCGATA ACGACCCTGTTCGTGTTGGAGGGCCCTCTAACCCGCTTCTCACTGACGGTGGCCTCTCCACTGTTATTGCTAAGACCAAC GGCTCCTCCGGTGAGTTCCTCTCGGCTTCCCTCGGCCGCTGGCAGAATCGCGGTTCGAACCCTGATCGCGGTCTTATCAT GGTTGGGACTCGTTGCGACGATCAAGGATCGGGCTAA
Protein sequence (LotjaGi1g1v0671300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVGGPSNPLLTDGGLSTVIAKTN GSSGEFLSASLGRWQNRGSNPDRGLIMVGTRCDDQGSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 107 | 107 | 1.2E-49 | – | |
| PANTHER | 1 | 107 | 107 | 1.2E-49 | ||
| ProSiteProfiles | 2 | 34 | 33 | 9.099 | ||
| SUPERFAMILY | 4 | 50 | 47 | 2.55E-14 | – | |
| Gene3D | 5 | 112 | 108 | 9.9E-32 | – | |
| Pfam | 5 | 47 | 43 | 1.4E-15 | ||
| PRINTS | 19 | 39 | 21 | 6.5E-23 | ||
| PRINTS | 41 | 54 | 14 | 6.5E-23 | ||
| PRINTS | 55 | 76 | 22 | 6.5E-23 | ||
| MobiDBLite | 98 | 118 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Transcription preinitiation complex assembly | The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. |
Expression pattern of LotjaGi1g1v0671300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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