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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0671300 |
| Transcript ID | LotjaGi1g1v0671300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|P48513|TF2B_SOYBN Transcription initiation factor IIB; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi1g1v0671300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123534651..123538868) extracted from Lotus japonicus Gifu genome v1.2.
TGTTAATTTTATTATTCCATTTGTGTTCAACACACACCACCATACCGCCTATAAATACCAAACACTAGTTCATTTCTCAG TTTCTGTCAAATCCACCATTCCCATTCTCTCTCGAAACGCTTCTCACAGAGAGTAACCGCCATGGAAATTCCAAATCTCA CCACCTTCTAGACAACACTGAAACTCTCTTCCTCCTCAACGAAACCCTAACCGCCACCATGTCCGACACATTCTGCTCCG ACTGCAAGCGCCAGACGGAGGTGGTCTTCGATCACTCAGCCGGCGACACAGTCTGCTCCGAATGCGGCCTCGTCCTCGAG TCTCACTCCATTGATGAAACCTCCGAGTGGCGAACGTTCGCAAACGAGGCCGGCGATAACGACCCTGTTCGTGTTGGAGG GCCCTCTAACCCGCTTCTCACTGACGGTGGCCTCTCCACTGTTATTGCTAAGACCAACGGCTCCTCCGGTGAGTTCCTCT CGGCTTCCCTCGGCCGCTGGCAGAATCGCGGTTCGAACCCTGATCGCGGTCTTATCATGGCGTTTAAGACCATTGCTACC ATGTCTGATAGGTAATGGCAAATTGGCAATGCAGCCAAACAGAATAATCTGAAATTCCATGAATTTAACCTAGTGAATTG ATATGTACTGTGTGCTGCATTTCATTTCTTGAATTATCATGATTGTTATCTGTGTAAGTTAAGCATTGTTGTATGGAAAC TATCATGTGCTGCATTGTTGTATGATTGAGTTATTAACTCATGTGAGCTGATAAATTTTTCAGGTTGGGACTCGTTGCGA CGATCAAGGTATTACATTTTCTCGTATCGGATAGCTTTATACTTGGATTCATTGCATGTCAAGTTTCATGAATTTTTTCA TATGGACTATATATGTGATTGATTTTGATTGACTCTATTGTTGTGATATTTTGATAAATCATGTAGTTTTGGGCTACATT CCTGTTTGACATTAGACTGTAATGGTTTTAATCCGGAAGAAGGGGAGGCTATAAGGTTACTTCTGGTGTGGTTTGTTTGC ATCATTTAACCTTTGAACTTCTTTGGGAATTTCTGGGGAGGTGCTGGGAGCAAAACATTAAAAGTTATGTTGAAAATTTT ATATGTATGGTTTGTAATTTGTACGTTGATTGCTAAGGAATTGGTGAAACTTCACCTGGCATGATGTTTTCATAAAGCAA GTAATGTGATGACTGGATGCTAACTGACTGAGAGAAAGGATCAGTTTTTCATGCCCTCCCATTATTTCAAGCTTTTCAAA AATTTGTATAGTCCTTGCATCATGTTGGTTGCTCCTTGAAACAATTGTTTTGGTTTTTCTTTCTCATCTTTAATTTCAAA TTTCATGAAAAGTTTGTATTTTTACTCCTGTTATGCAATCAATTTGAAGGATCGGGCTAATGAGATATATAAGCGGGTTG AAGATCAGAAGTCTAGCAGAGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTACATAGCTTGTCGACAAGAAGAC AAGCCACGCACTGTAAAGGGTACATGCTATGATTTTCTTAACATAGATGCTTCTAGATCTATCATTCCCTGTATAAACAA GCGTTCCTGAACTGATGGATTTCAAATAGAGATTTGCTCTGTTGCCAATGGAGCCACCAAGAAGGAAATTGGCCGAGCAA AAGAGTACATAGTGAAACAACTGGGTTTGGAGAACGGTCAATCTGTAGAGATGGGAACAATACATGCTGGGGACTTTATG GTAAGTGTTCTTCATTGATGTGTACTTCTGCAGCACAACTGGATATTTTAATCAATGACTTAGCTGACTCACATTATTTT TCTATCACTAACTTCAGAGGCGATTTTGTTCTAATCTTGGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTT CAGAAATCAGAAGAATTTGATATAAGGTAAATTTAGTTTGTCTTGTATTTCTTTAGACTCCAGAGTATAAAATAGATGTT CGCTGCTAAAGGTTAGCTTGTCGTATGTATTTTTTCATACTAATACAAGATGTGAGTACAGTAATTTATGAATTCAGTAA AAGCTAGTGCCTCTTCTGGTAGGAAATTTAGATGGAAAAAGTGAGAAGTCTAAGCAGTGTTTCTGTAATAAAATGAACCA ACAATATCAGCCTTAGATTAGGATAAATATTCTAGAGTCTAGACTGTGAGATTAGGTTTAGATAACTTTGCCCTTTTGAT TGTGGACTAGAAACCTTTGGCTCCTTCAAGTTTTATGCTTCTACCTGTGGGATAAATGGAAACCATGAGGGGTGCCGAGC ATGTTTGTGAACAGGGGCAGCTGTGAGGGGCGTGTGACATGCTTGAGAAAAGTGCAAACTCTGAAGTGTATGTTTGCATG ATAAGTGAAGGCTTGGTACATGACGATATTATTATGGGTTACCTTGAATTTAAACTTCTTTTCCATTTAACTAGGAACTA GGCACGGGGTGAGTTACAGGATTAGAACTTCTATTGCACACATATAGGCACATATTGTTTGATTGATGCATTGGACATTT GAATGGTACAAAAAATATTCACTGTTCTCTGCATGGTTACATTGTCATGTTTTTAGGTTTCATTATCATAATTCATAAAC TTGCAGTATTGACAATAATATATTAACTATCCCACTTACCCAACCCACCTTAAATTATTTGGTTGAGGCTGACATTGTCC TATGTGAGAGAATAGGTCAAAGTGAGCCCGGATGGGTTACTCAGCCCATTCCTTTTACATATAATATTTAGTATTTATAA TTTTCTATTATTTAATGGTCTAACCTCATTTTAACATTTTACTTAGGGTGTTTGAATTTAGCCTTCTTCGAATAGGGAGT AAAAGATACTACATATATTGTGGGAAATCATAATTTATATGATACATTTACTAATTAAATGAACAATTATTATTATATGC TTGTTTCATTATCTTATTTAGCTTATATTTCTAGTAAACCCTGTCTTATCATTTGTTACACCCTATCTTATTCAGATCTG CGGATCACTGGGTTTCATAGGGTCTTTGGTCGGGTTCACATTAAAAAATTGACTCCCTAAAATTTAGGATTGGGTGGGGG ACCAGTAAAATTCATCAAAATCCGTCCCACAAACACCTTATATTTCACTGCACTTTTAGTTTGTACTTTGTATGACTTCT CTTTTTTCATAATCTTCAGATGGATGCTATAATATTCTTATGATTGATACTAATAACATCTTTAATTTGCCAGGAGGAGT CCCATATCAATTGCTGCAGCTGTTATATACATCATAACTCAACTTTCGGATGATAAAAAACCTCTCAAAGGTCTGTGACA TTTCCTAGAGGAAAACACGAAAGCATGGAATACCAAAAATGGATTGATTACGTTAATTGTTTATGCAAATTGCCTCTCCA TTTTCTTATATGTTGTTGTGGTGATAGTTTTTATTTGGAATTAAATTTGATTGTAAGAATTATTCGAATATTTGCTGCTC TTTATTATAGGAGTTAGAGCCCCGTTTGGATACATACATATTAGAGCTTATCTACTAGAAAAACACTAGATAAGCTTCAA TAAGTGCTTTGTTTTGCATTCAAACGGGTTCTTACTTGCTAAGCTAAAAAAAGCATGTATGTATCTGACCTATTGCGTTT TTGCAGATATATCAGTAGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTACCCCCATGTTTCG AAAATAATACCAAACTGGTATGCAAAAGAAGAGGATTTAAAGAACCTTTGCAGCCCTTGAAGCAAAACAGTTGCAGCCAT ATTCAATAACCTAGATGCCATTGAAACATGTTGTTTCTGATGTACTGAACTGTTGCATACTTTTGTTTGACATAGCGAAT ATGAAAAATTCCTTTGTAGTTAACTGCACTATTCATTTGGGCTCACCCTCCCGATTTAACTAGTTTAGGGGAGAGGCACT ACATTCATACTTAAAATTTGCTCGACCTGATGAAAGTAAAACAGATTTTGTTGACAAGCTCAGCCTCTTCAATGGTTCAA GAACTGATGCTCTTGCTCAATCAATGAATGTTTTCCTCAAATTTCTTCGAGAAGAAGTTTGGCCTTTTTTCAAACATCAC TTGTGCAACCAAACAAAACTTAGAGCAGCTAACTAACTTCTAATTGCAAGTTTAGAAT
CDS sequence (LotjaGi1g1v0671300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGACACATTCTGCTCCGACTGCAAGCGCCAGACGGAGGTGGTCTTCGATCACTCAGCCGGCGACACAGTCTGCTC CGAATGCGGCCTCGTCCTCGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACGTTCGCAAACGAGGCCGGCGATA ACGACCCTGTTCGTGTTGGAGGGCCCTCTAACCCGCTTCTCACTGACGGTGGCCTCTCCACTGTTATTGCTAAGACCAAC GGCTCCTCCGGTGAGTTCCTCTCGGCTTCCCTCGGCCGCTGGCAGAATCGCGGTTCGAACCCTGATCGCGGTCTTATCAT GGCGTTTAAGACCATTGCTACCATGTCTGATAGGTTGGGACTCGTTGCGACGATCAAGGATCGGGCTAATGAGATATATA AGCGGGTTGAAGATCAGAAGTCTAGCAGAGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTACATAGCTTGTCGA CAAGAAGACAAGCCACGCACTGTAAAGGAGATTTGCTCTGTTGCCAATGGAGCCACCAAGAAGGAAATTGGCCGAGCAAA AGAGTACATAGTGAAACAACTGGGTTTGGAGAACGGTCAATCTGTAGAGATGGGAACAATACATGCTGGGGACTTTATGA GGCGATTTTGTTCTAATCTTGGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTT GATATAAGGAGGAGTCCCATATCAATTGCTGCAGCTGTTATATACATCATAACTCAACTTTCGGATGATAAAAAACCTCT CAAAGATATATCAGTAGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTACCCCCATGTTTCGA AAATAATACCAAACTGGTATGCAAAAGAAGAGGATTTAAAGAACCTTTGCAGCCCTTGA
Protein sequence (LotjaGi1g1v0671300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVGGPSNPLLTDGGLSTVIAKTN GSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACR QEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 307 | 307 | 1.2E-173 | ||
| PANTHER | 1 | 307 | 307 | 1.2E-173 | – | |
| ProSiteProfiles | 2 | 34 | 33 | 9.099 | ||
| SUPERFAMILY | 4 | 50 | 47 | 1.62E-13 | – | |
| Pfam | 5 | 47 | 43 | 7.8E-15 | ||
| Gene3D | 5 | 194 | 190 | 9.5E-66 | – | |
| PRINTS | 19 | 39 | 21 | 1.7E-67 | ||
| PRINTS | 41 | 54 | 14 | 1.7E-67 | ||
| PRINTS | 55 | 76 | 22 | 1.7E-67 | ||
| SUPERFAMILY | 105 | 196 | 92 | 2.0E-22 | ||
| SMART | 110 | 192 | 83 | 1.3E-8 | ||
| Pfam | 112 | 176 | 65 | 2.3E-19 | ||
| CDD | 112 | 185 | 74 | 2.76051E-13 | ||
| ProSitePatterns | 144 | 159 | 16 | - | ||
| PRINTS | 152 | 171 | 20 | 1.7E-67 | ||
| PRINTS | 179 | 194 | 16 | 1.7E-67 | ||
| CDD | 207 | 289 | 83 | 2.30802E-9 | ||
| SUPERFAMILY | 207 | 308 | 102 | 5.87E-26 | ||
| Gene3D | 209 | 311 | 103 | 3.2E-27 | – | |
| SMART | 211 | 290 | 80 | 4.3E-7 | ||
| PRINTS | 212 | 230 | 19 | 1.7E-67 | ||
| Pfam | 213 | 281 | 69 | 4.5E-9 | ||
| PRINTS | 244 | 260 | 17 | 1.7E-67 | ||
| PRINTS | 276 | 290 | 15 | 1.7E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | TBP-class protein binding | Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). | ||
| Biological process | Transcription preinitiation complex assembly | The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. |
Expression pattern of LotjaGi1g1v0671300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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