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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000812
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.483s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0102019.1
n.a. PREDICTED: transcription initiation factor IIB-like [Fragaria vesca subsp]. vesca] gi|470137151|ref|XP_004304334.1| chr0 43335870 43339698 +
3 domain predictions
2 GO terms
Lj0g3v0275259.1
n.a. PREDICTED: transcription factor IIIB 90 kDa subunit-like [Cicer arietinum] gi|502091837|ref|XP_004489648.1| chr0 142773937 142795291 +
3 domain predictions
2 GO terms
Lj1g3v2546340.1
n.a. PREDICTED: transcription initiation factor IIB-like [Fragaria vesca subsp]. vesca] gi|470137151|ref|XP_004304334.1| chr1 29373423 29374391 -
3 domain predictions
2 GO terms
Lj2g3v1758490.1
n.a. PREDICTED: transcription initiation factor IIB 7-like isoform X2 [Cicer arietinum] gi|502161095|ref|XP_004512023.1| chr2 27065068 27068149 +
3 domain predictions
2 GO terms
Lj2g3v1768680.1
n.a. PREDICTED: transcription initiation factor IIB 7-like isoform X2 [Cicer arietinum] gi|502161095|ref|XP_004512023.1| chr2 27113049 27113926 +
3 domain predictions
2 GO terms
Lj3g3v0095850.1
n.a. PREDICTED: transcription initiation factor IIB-like [Fragaria vesca subsp]. vesca] gi|470137151|ref|XP_004304334.1| chr3 785953 789917 -
3 domain predictions
2 GO terms
Lj4g3v2215520.1
n.a. PREDICTED: transcription factor IIIB 90 kDa subunit-like [Cicer arietinum] gi|502091837|ref|XP_004489648.1| chr4 30751530 30754040 +
3 domain predictions
2 GO terms
Lj4g3v3113430.1
n.a. PREDICTED: transcription factor IIIB 90 kDa subunit-like [Cicer arietinum] gi|502091837|ref|XP_004489648.1| chr4 41691655 41694934 -
2 domain predictions
2 GO terms
Lj4g3v3113430.2
n.a. PREDICTED: transcription factor IIIB 90 kDa subunit-like [Cicer arietinum] gi|502091837|ref|XP_004489648.1| chr4 41691942 41694934 -
2 domain predictions
2 GO terms
Lj6g3v1995740.1
n.a. PREDICTED: transcription factor IIIB 50 kDa subunit-like [Glycine max] gi|356497852|ref|XP_003517770.1| chr6 23114798 23119483 -
2 domain predictions
2 GO terms
LotjaGi1g1v0671300.1
n.a. Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|P48513|TF2B_SOYBN Transcription initiation factor IIB; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi1g1v0671300 LjG1.1_chr1 123534651 123538868 -
3 domain predictions
2 GO terms
LotjaGi1g1v0671300.2
n.a. Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2; TrEMBL-Plants: tr|A0A059DI46|A0A059DI46_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0671300 LjG1.1_chr1 123535049 123538650 -
3 domain predictions
2 GO terms
LotjaGi1g1v0671300.3
n.a. Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|P48513|TF2B_SOYBN Transcription initiation factor IIB; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi1g1v0671300 LjG1.1_chr1 123535049 123538650 -
3 domain predictions
2 GO terms
LotjaGi2g1v0094000_LC.1
n.a. Transcription factor IIIB 90 kDa subunit; TAIR: AT3G09360.1 Cyclin/Brf1-like TBP-binding protein; Swiss-Prot: sp|Q8HYB2|GGTA1_LEMCA N-acetyllactosaminide alpha-1,3-galactosyltransferase; TrEMBL-Plants: tr|I3S7K7|I3S7K7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0094000_LC LjG1.1_chr2 29944447 29957352 -
2 domain predictions
2 GO terms
LotjaGi2g1v0094000_LC.2
n.a. Transcription factor IIIB 90 kDa subunit; TAIR: AT3G09360.1 Cyclin/Brf1-like TBP-binding protein; Swiss-Prot: sp|Q8HYB2|GGTA1_LEMCA N-acetyllactosaminide alpha-1,3-galactosyltransferase; TrEMBL-Plants: tr|I3S7K7|I3S7K7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0094000_LC LjG1.1_chr2 29946192 29957084 -
2 domain predictions
2 GO terms
LotjaGi2g1v0094100.1
n.a. Transcription factor, putative; TAIR: AT3G09360.1 Cyclin/Brf1-like TBP-binding protein; Swiss-Prot: sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit; TrEMBL-Plants: tr|A0A1J7FQ67|A0A1J7FQ67_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0094100 LjG1.1_chr2 30125354 30148403 -
3 domain predictions
2 GO terms
LotjaGi2g1v0391100.1
n.a. Transcription initiation factor IIB; TAIR: AT4G36650.1 plant-specific TFIIB-related protein; Swiss-Prot: sp|O23215|PBRP1_ARATH Plant-specific TFIIB-related protein 1; TrEMBL-Plants: tr|I1J8V2|I1J8V2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0391100 LjG1.1_chr2 88719448 88723588 -
3 domain predictions
2 GO terms
LotjaGi5g1v0136500.1
n.a. Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi5g1v0136500 LjG1.1_chr5 32525642 32530434 +
3 domain predictions
2 GO terms
LotjaGi5g1v0136500.2
n.a. Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi5g1v0136500 LjG1.1_chr5 32525900 32529492 +
3 domain predictions
2 GO terms