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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0672000 |
| Transcript ID | LotjaGi1g1v0672000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat Stress Transcription Factor family protein; TAIR: AT2G41690.1 heat shock transcription factor B3; Swiss-Prot: sp|O22230|HSFB3_ARATH Heat stress transcription factor B-3; TrEMBL-Plants: tr|I1JNB9|I1JNB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123639677..123643044) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGTGGTAAGTGATAATAAGGGGTTGTTGTTGGAATGTGGAATTAGAAAGTGCAATCCACCACCGTTCTTATTGAAGA CATACATGCTGGTAGAGGATCCAACCACCGATGAAGTGATATCATGGAACGATGAAGGGTCGGCGTTCGTCGTGTGGCAG CCGGCGGAGTTTGCTCGTGATCTCCTCCCAACTCTCTTCAAGCACAGCAACTTCTCTAGCTTTGTCCGGCAACTCAATAC CTATGTACGTACATGTCCAAATTAATACACTTTATATATACAGTATATATATTTAGATATGATTTAGTCCATCTTTTAGA AATTCTTCTAGGATTAATTTTATAATCAAATGATTTGAGTGAAGTTTCTGCGTGCTAGAGTTGATTTTGTTATTACCATT ATTTAGTTTCACACTTATTAGAGATAGTATCTATAACCAGTCATATTAAAAAGCTTATAATCATATATTGCATAAGGTTT TTAATTTTAATATTGCTTTACTATATATTTTTTAGTTTTTTTATTGATTGTGCATATGAACATCAATGTTTACACACAAT TGAAGTTCTCTATATTTTAGATCAAAATTTGACATGAATTGCCTATATGTTGGAATGAGTGTGATGACGGTGTTAATTCT CAAAACTTCCAAAAATCTAAAAAGTGAAATTGGCGCTACAGTATTTTTTTATTTTCTGCAACAGTTGAAAAGTGTAATCA TAGACATAAAATGCAAGAGTTTTTGTGTTTTAATTTTCAAAACTTCACATAGCATTTTGTGACTGTCATATGTTCTGGCG TTACATATTTCTTTTGGAGACAATTTTTTGTGCTCTTTGGTTACACAGTGAGAAAATGTAATTTATTATGGAGAAAATGC AACAGTTATCACTTAATTATTCTCTATTATTATGTAGAGAACACTTATTTAATGTTGTTATCAAATGTTTGGCCTAAAAT GAACAATTTATGGCAATATGCATAAACTAATTCTTGAGACACTTTTTAAAAACATTTTATGCTTATTATATATACCCTTG TTGCTAGAAGTAAAAAAATGGTGTAGTGTGAACAAAATTGAAGGGACAACTTAATTTGGCCAGTATTTAAGTTTGTTAAG AAAAAGGAAAGAGATAAAGAAATCTTTCGTTTTCTTGACTAGGTTGATGGAACAAGTCAACTACATTTGTTTGACCTTAT TAGTTTAGTATTCTTCTTACGAAATGAATGAAGTTGACTTGAAGTTTTCAATTAAGGGACAGAATCTAGTTTTTTACACC TCTTTTCTCTCACACATCCTCTCATTTTCAATTTATTTATTATTTTCCTACTCCATCTCTCATACTCTATATATCATTTT TTATAGACACTCAAATAAAAAAAATTGAGTGAAAAAAGATAAATAATAAATATAAATATTTTATATGCTAGATATATAGA GAAAAAAAGTAGTGTAAGGGAGAAAATTACAATAAGGTGTTTAAAAATCAGACATAATTATTTAGTTTTTTATTTTATTT ATCTCTCTTCACCTCACACAGGTGGGTGTGAGAAAAAATTTCTAGAGAATATTTGTAGTTTGATAATACCTGACCTGTTA CTGAGCGAAATTTCAGAGAAAATGCCAAATCAAGATTATAAATAAAATAAAACATTATAGAATTAATAATACTGCTATAC ATGTTTAATTTTTCCTTCTGTTGATGGTATGCATATTGAGGGTCTGGTCAGAAGTCAGAGCTGGACCAGCTAATGAAATT CATATCTAATAATCAAACTATCTGGTCAATGTTAGGGGGCGAGCATCACTTCATATTTTCCTAAAATCAAATTTAATATG ATTTAATTTCTATGCACTGATTGTGTAAAAAATAATTTACACCGTCAACCAATCAGATTTCAAAGATGTGAGAAAATCTC TTTTTTTATTTAATTTCATTAATTGACGTCGCACATCTTTGAAATTAGATTGGTTGACGGTGTAAAAAACTTTACGTCGT CGGTGCATCATTATTTTTCTCATTTAATATATAACAAGGAAATAATCATATCAAATTTTTTCTTTATAAATGGAAAATAT AAAGAATTAAAGGGACGTGCATCGTTAATGTAAACAGATTTTACACAGTCATTCAATTAAATTCCGCCAAATCATAAAAT ATATTTTTCGATTTCTGGTTTTTGCGCTTTCATGAGATGTTTTTATGTGAAATTTTAATATTTTATTTTATAGTATATTA TTTAAATACCAATTCTTCATGTTCTAATTAAATTTAGATAAATAACCCACATTTTCTTTACTTGGCCCATTACTTGTGGT TCAAACTGCGGACTCTAGTTTTGCTCTCTAATTAGTGATTGACACGTATAATTAAGATGATTGTGTAAATATTTTTGCAC ATTAATTAACTTCATTAATTTAAAGTGATGATGACGAAAGTCATTGCTTAACTAAGAATTTTCATGATTCATGAATCTAG TTCATTCTTACACCATACCTTTAACTAAATCAGTCAGCTTGCAAATGTAAGGTTTGCCGACAAATAAGTCCAACTTCTTA ATTAGGCCTAGTTCTAATTATCCATTGGTTGGAATTTCTTCACATGACTTTTTTTAATCCTTGAAATTTTAAGGTGAAAG AGACGGTGTCCTAGTCCAGAATAAGGAAAATTGCATATAAATTTAAATTCTAAGGGGACGAGTAATTAAGAGCTTAAACC TACAACTTTTCAAATATTATCATTTTTCATGCTCCACTCTCCCAACCATTGGAATTATATTGCTTTATTTGAATTTTTGG TCCGCCACATTCTTTTGCTTTATATATGTTTGGCCCCTAAAACTAACCAAGCATTGGATGTATTATTTTGCATGCATGTA TGATGTATATATAGGGCTTTCGTAAAGTTGCAACAAGCCGATGGGAGTTCTGCAACGACAAGTTCCGAAAAGGTGAAAGA GAACTCCTAACTGAGATTCAGAGAAGAAAAGCATGGAACAGTACCAAGCAGCAGCAACAACAACAACCCAATACCACACC AAACCAAGGCACACTCCAAGATTCTGATGAAGACCAAAGGTCGTCATCAACCTCATCATCTTCGGGTTTAACGAGTCTTG TGAATGAAAACAACCGGCTCAAGAAGGAGAACGGTGTGTTGAATTGTGAGCTAACAAATATGAAAAGGAAGTGTAGGGAT CTGCTTGATTTGGTTGCTAAATATTCTTCACATGCAAAGGAGGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGACT AGATGTTCATGGAGAGAGGGAGATGAAAAGGAATAGAGCTGAGATAAGTGAAACTGCTAGCATCTTGCTGTCTCAGTCAT GCAAATAG
CDS sequence (LotjaGi1g1v0672000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTAGAGGATCCAACCACCGATGAAGTGATATCATGGAACGATGAAGGGTCGGCGTTCGTCGTGTGGCAGCCGGC GGAGTTTGCTCGTGATCTCCTCCCAACTCTCTTCAAGCACAGCAACTTCTCTAGCTTTGTCCGGCAACTCAATACCTATC TTGCAAATGGCTTTCGTAAAGTTGCAACAAGCCGATGGGAGTTCTGCAACGACAAGTTCCGAAAAGGTGAAAGAGAACTC CTAACTGAGATTCAGAGAAGAAAAGCATGGAACAGTACCAAGCAGCAGCAACAACAACAACCCAATACCACACCAAACCA AGGCACACTCCAAGATTCTGATGAAGACCAAAGGTCGTCATCAACCTCATCATCTTCGGGTTTAACGAGTCTTGTGAATG AAAACAACCGGCTCAAGAAGGAGAACGGTGTGTTGAATTGTGAGCTAACAAATATGAAAAGGAAGTGTAGGGATCTGCTT GATTTGGTTGCTAAATATTCTTCACATGCAAAGGAGGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGACTAGATGT TCATGGAGAGAGGGAGATGAAAAGGAATAGAGCTGAGATAAGTGAAACTGCTAGCATCTTGCTGTCTCAGTCATGCAAAT AG
Protein sequence (LotjaGi1g1v0672000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVEDPTTDEVISWNDEGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYLANGFRKVATSRWEFCNDKFRKGEREL LTEIQRRKAWNSTKQQQQQQPNTTPNQGTLQDSDEDQRSSSTSSSSGLTSLVNENNRLKKENGVLNCELTNMKRKCRDLL DLVAKYSSHAKEEEDERPMLFGVRLDVHGEREMKRNRAEISETASILLSQSCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 206 | 206 | 5.1E-95 | – | |
| PANTHER | 1 | 206 | 206 | 5.1E-95 | ||
| Gene3D | 1 | 89 | 89 | 1.8E-30 | ||
| SMART | 2 | 87 | 86 | 1.5E-36 | ||
| SUPERFAMILY | 2 | 87 | 86 | 2.72E-25 | ||
| Pfam | 3 | 87 | 85 | 1.7E-24 | ||
| MobiDBLite | 89 | 135 | 47 | - | – | |
| Coils | 128 | 155 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0672000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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