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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0672800 |
| Transcript ID | LotjaGi1g1v0672800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 6; TAIR: AT1G52520.1 FAR1-related sequence 6; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|K7MYC0|K7MYC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123767075..123771522) extracted from Lotus japonicus Gifu genome v1.2.
CGATTCAAGAGGTTATCTGCCTAGCTGGGGTTGCAGAGCTAATTAGTATGCGATGAATTTAATAAGCGAGATGTTATTGG CCCTTGGAGGTTAAGGCGACCCATATAGAGAAAACCCCAGTTCGTATTACCTCTATGAAGTTGGTTGTTGGCCGCTTAAG GGGAGCTCTTATCTCTCGCCCCCCCTCGTATGGTGAAATGGGTCCCCCATAAACATCTGTGGTGGTTATCAATGTTGATG GGAGTGTGAACGGTGAGCCATGTTGGGTTAGGTTTGGGGGTGACTCAGGGATGAACATGGTGGTTGGATAGTTGGCTTCC ATGGGTTATATGGTGCTTCCGATATACTTCACATGGAGCTCTTGGCTGTCATCCATGGCTTGGAGTAGGAGGTATGGAGG GTTGTTCGTTTCTCTGATTCTAAGCATCTTGTCTTCCAAATTGATAATGGTCCATCCCATTTTCATAAGTACGTTTTTCT TTTTTTTGAAACATCAAGGATCTTATTGCTAAGCCTTGGGTAGCATAGGTGAAACACATTTTGCGGGAAGAAAATGCTTG TGCGTATTTCCTAACGATTTGGGAGATCAGCAACACAATGGGTTTGGTATTCTTCAAGATCCTCCTCAAGAGATGCAAGT AAGTTTGATGGCGAATACTTTATGAGACACCTGAGGTCGATTAGGGCGGCAAGTGCTCCCCGGTGCAATGAGGCACAGAC AAGGAGCGGCTCCTGACATGCTTCTAGGCAGATGGACACATGAATTAACTGATCTCGCACCTAAACAAGAGATTTTTCGA GATTGTATAGGTATGAGACTATACAGATGAAGAGAGCATAAAAGATTTGATTGATATTACTCATGACAATAGATATATTA TTTTTTCAGGAACTCAACTCATAAAAACTCTAAAAGGAAGATTTTCTTGGAGCGTATTGGGATGGATCACATAGCTCTGT TTTTTATTTTCCTTTTTTTTTGGGACGTAGCGGGGCTACTCGCTCTTGCACCAAAATGAGTGTAAAAAAACATTCAATTA TATCTTTCCATATTTAGTTACCAATTAATTCATAATTAATAAAATTATACATAGTTGAATGTGATTAACAGCTCAACACT TCGTCCCTTAAACAAGTGGTTGAAGGTTCGATTCTCAATTTTTGTGAATGAAAAAAAAAAATCTTCACCATTTGATTCCA ATCTTACGACTATCAATTGTGAGAATATCTGAACAAAAATCGAACCTTTTTACAATAGTGAATTAGTGATTATTAAAACG CATTCAAGACTTTAAAAAAAAAAAGTCATTCAAAATACACTAGACATCAAATAAATAAAAAACACTGTTTCAAAAAAAAC ACACACACATGAACTGTGTCCGTTATAGCATGCTTGGCACTTGTCAGTTGTCGAAGTCTCTTTCATTTCATGACTACAAA TTAAACTCCCTGACTCACTGTCACACAACAATGGATCCCAGTTCAGCAACCAAAACCTAAACCCCCAATTCTTAAACGCT GCGTTTCTACCTTCTTCTTCTTCTCCTTCCCAAACAACAACACTCTCTTCACACCACTGATCACTCTCTGCAAGAATCAG CACACAGCATTCAACCCCCAGCATTTCCAGCTTTTGGGTATGTATCAAATTCTTTATATCGCTTTTCCCATTTATCTTCA CTTTCTGAATTTCATTTCAGCTGGTTAGTATTTTATTTCAATTATCAAAATAATTTCTTTTTTTTTCTTAACCTATATGA GCTGATTAGCATACCCTTATTATAGAGCTTGAATTTTTAGTTTTGCTGCTGCAATTTACACTGTCTATTTTTGTTAAAAA AATTCATTTGTGTTTTTAGGACAAATTATGCAATGTTTGTATATTTAAATTTTTAATTAATTTGATAATGTAACTCTTAC TAAAAAGTTATCTTGATTCTTGAAGGTGTGGTATTGTTTGAGCAAATCAAAGTTACTGGGTTGAAATTATAGACTTAGGT TGACATGGTTGCTTTTCTTTCAGGAAATGGGTGATGACTGTGATACTGATTCACATGCCCCATTAGATATTGATTCTAGT GGGTGTCACGAAAACTTCATCCCTCATTCACTGGAAGAATGTAAGGCTGAAATCCTTTCTTTTGATGAAAATGATGATGT TGATGTGCCCCAGCCTGGGATGATATTTAGTTCGGTGGATGAAGTCAGATCGTATTACAAAAACTTTGCCGACCGATTAG GCTTCCGCATCAAGATTAGAACCTCGAGAAAGGGGCGTGATGGCAGAGTTAAATACATAAGACTTCAATGCACTGGAGCT GCGGGAGATAGAGGGGGTAATAAAGGAGTAAGAAATACTTGTAGCTACATGAAACCAAATTGTGATGCCAAGATAACCGC GATGTTGTCTAAAGATGGAACCTTCCGAGTAAACACAGTTACACTCAGTCACAATCATGAATTGAGTTCACATGGAATCT TAAAGAGTATTGACATGCGTGGTAAGAAGATACTGGGTCAGATGAAGGTAGACATGTGTGTTAAGATGACATCAAGCCAA AATGACAGCGGAAACTACCCTAAGAAAATAAGGCATTTGATTGGGGAGAATGGAGATAGTGAATCCCTTCAAAAGTATTT GGTAAGGATGCAGAAACAAGATAGCAACTTCTTCTATACAGTTGACGTTGATGATTTCTTCACCGTGAGGAATGTTTTTT GGGCTGATGGGAGAAGTAGGGCTGCATATGAATCATTTGGTGATGTGCTGACAGTTGATACTACATATCTCTTTAATCAA TACAAAATGCCACTTGCAACTTTGGTTGGAGTAAACCATCATGGGCAATCTGTACTTTTTGGTTGTGCGCTGTTGTCAAG TGAAGACTCAGAGTCATTCGTTTGGCTGTTTCAATCATTGCTACATTGCATGTCTGGTGTTCCCCCACAAGGAATCATAA CAGATCATAGTGAGGCCATGAAGAAGGCGATTGAAACTGTGCTCCCATCCACTCGACATCGTTGGTGTTTATCATATATA ATGAAAAAACTTCCCCAAAAACTACTGGGATATGCTCAGTACGAGTCCATAAGACATCATTTGCAGAATGTTGTGTATGA TGCAGTCGTAATAGATGAGTTTGAGAGGAACTGGAAGAAAATTGTGGAGGATTTTGGCCTTGAGGACAATGAATGGTTGA ATGAATTGTTTCTTGAGCGCCATCACTGGGTTCCTTCCTTTGTAAGAGGTAATTTTTGGGCTGGAATGTCTGTTAATCTA CATAATGAAAGCATGCATGCGTTTTTTGATGGATATGTAAACCAGCACACAACTTTGTTGCAATTTATTGATCAATATGA TAATGCTTTGCAATACAAGGCAGAGCAGGAGTATGTAGCTGATGTACATTCATCTTGTAGCACTCAGTCTTGTATTACCC ATTCTCTCATTGAGCGGCAGTTTCAATCTGCATACACTAATGCAAAATTTCAAGAGGTTCAAGATGAGTTTGGTGGAAAG GGTGATTGTAACGTTTCTGTTGACCGAGTCGATGGTTCTGTTTGTCACTATAAGGTAATTGAAGATCGGATAATAGGTGA TATGCCTAGGGAATATGTGGTTGAAGTAACTTATGACAGAGTAAATTGTGATGTAAAGTGTGATTGCCGCCTGTTTGAGT TCAGAGGGATACTTTGTAGGCACTCACTTGCCATACTGTCACAAGAACGAGTGAAGGAGGTACCGGATAGATATGTTTTG GATAGGTGGAGGAAAAACATGCGGAGGAAGTATGTTTATGTCAAAACCAGTTATTGTGTTCAACACCTTAAACCTCAAAT GGAAAGGCTTGAATTGTTATGCAATCAATTCAAAAGTATTGCTGTATCCGCGGCTGAATTTGAGGAAACAAGTTCTTTTG TAAATGTTACACTCTGTAACTTGAAGGAGAAACTTGAAGCTTGGGTGCCTCATTTTGGAAACTCATCTCAGGTGGACATG GAGGAAGGTCAGTACATAAGCTCACCCTATGGTGCTGGAGATGTACTAATATGATGTATTGTGATTAGTATGTTTTCTTA TTCTCTTCCCCCAAGTTTAATGTACTCCCCTCTTCTTACTTATCTGTGATTAAGAGATGTAATTAATTTCAACTTTTTTT TAATGTTCTGTTGCCATCTTAGCTTTTAGATTTTTTCAATATTGAACTAGTTTATTACTTGAGATATTAGACTAGTGTAA ATGTATTTCTAAATTTATGTTATGAACCTATGGGTTCTTTCATGTGAATTCAACTGTAGAAAAAAAATGATCATGTCAAG TTTCATCATCTAGTTATTGATTTTTTTGTGAACAATAATTAAAGTAATAAAAAGATTAAAATCAATGATTGATGGTGAAA CTTGACATAAATTGAGAGGATCCATTGCTTTCTTTCGTTGGTTAAGTG
CDS sequence (LotjaGi1g1v0672800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGACTGTGATACTGATTCACATGCCCCATTAGATATTGATTCTAGTGGGTGTCACGAAAACTTCATCCCTCA TTCACTGGAAGAATGTAAGGCTGAAATCCTTTCTTTTGATGAAAATGATGATGTTGATGTGCCCCAGCCTGGGATGATAT TTAGTTCGGTGGATGAAGTCAGATCGTATTACAAAAACTTTGCCGACCGATTAGGCTTCCGCATCAAGATTAGAACCTCG AGAAAGGGGCGTGATGGCAGAGTTAAATACATAAGACTTCAATGCACTGGAGCTGCGGGAGATAGAGGGGGTAATAAAGG AGTAAGAAATACTTGTAGCTACATGAAACCAAATTGTGATGCCAAGATAACCGCGATGTTGTCTAAAGATGGAACCTTCC GAGTAAACACAGTTACACTCAGTCACAATCATGAATTGAGTTCACATGGAATCTTAAAGAGTATTGACATGCGTGGTAAG AAGATACTGGGTCAGATGAAGGTAGACATGTGTGTTAAGATGACATCAAGCCAAAATGACAGCGGAAACTACCCTAAGAA AATAAGGCATTTGATTGGGGAGAATGGAGATAGTGAATCCCTTCAAAAGTATTTGGTAAGGATGCAGAAACAAGATAGCA ACTTCTTCTATACAGTTGACGTTGATGATTTCTTCACCGTGAGGAATGTTTTTTGGGCTGATGGGAGAAGTAGGGCTGCA TATGAATCATTTGGTGATGTGCTGACAGTTGATACTACATATCTCTTTAATCAATACAAAATGCCACTTGCAACTTTGGT TGGAGTAAACCATCATGGGCAATCTGTACTTTTTGGTTGTGCGCTGTTGTCAAGTGAAGACTCAGAGTCATTCGTTTGGC TGTTTCAATCATTGCTACATTGCATGTCTGGTGTTCCCCCACAAGGAATCATAACAGATCATAGTGAGGCCATGAAGAAG GCGATTGAAACTGTGCTCCCATCCACTCGACATCGTTGGTGTTTATCATATATAATGAAAAAACTTCCCCAAAAACTACT GGGATATGCTCAGTACGAGTCCATAAGACATCATTTGCAGAATGTTGTGTATGATGCAGTCGTAATAGATGAGTTTGAGA GGAACTGGAAGAAAATTGTGGAGGATTTTGGCCTTGAGGACAATGAATGGTTGAATGAATTGTTTCTTGAGCGCCATCAC TGGGTTCCTTCCTTTGTAAGAGGTAATTTTTGGGCTGGAATGTCTGTTAATCTACATAATGAAAGCATGCATGCGTTTTT TGATGGATATGTAAACCAGCACACAACTTTGTTGCAATTTATTGATCAATATGATAATGCTTTGCAATACAAGGCAGAGC AGGAGTATGTAGCTGATGTACATTCATCTTGTAGCACTCAGTCTTGTATTACCCATTCTCTCATTGAGCGGCAGTTTCAA TCTGCATACACTAATGCAAAATTTCAAGAGGTTCAAGATGAGTTTGGTGGAAAGGGTGATTGTAACGTTTCTGTTGACCG AGTCGATGGTTCTGTTTGTCACTATAAGGTAATTGAAGATCGGATAATAGGTGATATGCCTAGGGAATATGTGGTTGAAG TAACTTATGACAGAGTAAATTGTGATGTAAAGTGTGATTGCCGCCTGTTTGAGTTCAGAGGGATACTTTGTAGGCACTCA CTTGCCATACTGTCACAAGAACGAGTGAAGGAGGTACCGGATAGATATGTTTTGGATAGGTGGAGGAAAAACATGCGGAG GAAGTATGTTTATGTCAAAACCAGTTATTGTGTTCAACACCTTAAACCTCAAATGGAAAGGCTTGAATTGTTATGCAATC AATTCAAAAGTATTGCTGTATCCGCGGCTGAATTTGAGGAAACAAGTTCTTTTGTAAATGTTACACTCTGTAACTTGAAG GAGAAACTTGAAGCTTGGGTGCCTCATTTTGGAAACTCATCTCAGGTGGACATGGAGGAAGGTCAGTACATAAGCTCACC CTATGGTGCTGGAGATGTACTAATATGA
Protein sequence (LotjaGi1g1v0672800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDDCDTDSHAPLDIDSSGCHENFIPHSLEECKAEILSFDENDDVDVPQPGMIFSSVDEVRSYYKNFADRLGFRIKIRTS RKGRDGRVKYIRLQCTGAAGDRGGNKGVRNTCSYMKPNCDAKITAMLSKDGTFRVNTVTLSHNHELSSHGILKSIDMRGK KILGQMKVDMCVKMTSSQNDSGNYPKKIRHLIGENGDSESLQKYLVRMQKQDSNFFYTVDVDDFFTVRNVFWADGRSRAA YESFGDVLTVDTTYLFNQYKMPLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKK AIETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKIVEDFGLEDNEWLNELFLERHH WVPSFVRGNFWAGMSVNLHNESMHAFFDGYVNQHTTLLQFIDQYDNALQYKAEQEYVADVHSSCSTQSCITHSLIERQFQ SAYTNAKFQEVQDEFGGKGDCNVSVDRVDGSVCHYKVIEDRIIGDMPREYVVEVTYDRVNCDVKCDCRLFEFRGILCRHS LAILSQERVKEVPDRYVLDRWRKNMRRKYVYVKTSYCVQHLKPQMERLELLCNQFKSIAVSAAEFEETSSFVNVTLCNLK EKLEAWVPHFGNSSQVDMEEGQYISSPYGAGDVLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 646 | 609 | 3.6E-200 | – | |
| PANTHER | 38 | 646 | 609 | 3.6E-200 | ||
| Pfam | 62 | 147 | 86 | 3.3E-11 | ||
| Pfam | 247 | 340 | 94 | 1.1E-30 | ||
| ProSiteProfiles | 530 | 568 | 39 | 10.843 | ||
| Pfam | 542 | 565 | 24 | 2.4E-5 | ||
| SMART | 543 | 570 | 28 | 2.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0672800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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