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LotjaGi1g1v0673000.1

Overview

Field Value
Gene ID LotjaGi1g1v0673000
Transcript ID LotjaGi1g1v0673000.1
Lotus japonicus genome version Gifu v1.2
Description Cytoplasmic tRNA 2-thiolation protein 2; TAIR: AT4G35910.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|O65628|CTU2_ARATH Cytoplasmic tRNA 2-thiolation protein 2; TrEMBL-Plants: tr|A0A072U1R0|A0A072U1R0_MEDTR Cytoplasmic tRNA 2-thiolation protein 2; Found in the gene: LotjaGi1g1v0673000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:123777177..123781590) extracted from Lotus japonicus Gifu genome v1.2.

AAACCATGACAATCATTATTAACTTCTATGATACAATCATTTTTTTTGACAGTTTCTATGATACAATCATTCATCATATA TAAATGAGATGTTTCATCATATATGTACCATCACTTTATCACTTTATATTATTCTTTTCCAAAATGAGCTACCTCAAAGC CCAATTCAAAAACCAGGCCCAATAACAAAAACATCATAGTGATATCAAAAATTAAAAAATAAACCGAAATTTAGAAAATA AACCCATTGACAAAAAAAAAAAAAAACCCTAAAACCCTAACCAGGTGAGTGTGATTGAGCGTTGAACGTTGATGATGGCG TGCAATGGCAGTGGCGGGTGCCAATCCGGTTGCTACAAAGACGAAGAAGAGACACGCAACGAACCAACAGAGTCTGCAGA AACCGATTCGAGAAGCTCTGGTAGTATCTGCATCAAGTGCAAGCTAAACGACGCCGTTTCCGGCTACGGCGGCATCGACG ATGGTCGTTTCTGCGCTGATTGCTTCAGGAGCAACTTGTTCGGGAAGTTTCGCCTCGCCGTCACATCCAACGCCATGATT TCACCCACTGATAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCTTCCAGGTCAACACAAATCCAATCCTTTTTGTCTTT TTATAGCTATTTATGTAATTTAATGCATATGGAATGATGGGTCAATTTCAATTTAGAATTTTTCATATTGTAGGTGATAA AAATTAATACTTGTGATTTTTTAAGGTAGATTGTAGGTTGTGCAGGACATGCTAGAATGTGGGTTGATTTTAATTTAGAT TTTGTACTTTGTAGATTATTAAAATTTGTGTTTTATTTTATATAGGGTAGCTTTGCAGTTTGTGCATGACATGCAAGAGA GGGCCCAAAAGAACTTTGATGCTAGTAGAGATAGGTCGCTGCCGGTGTTTGGTGTTGGAGTGGTGTTTATTGATGAGAGT GTTGTTATGCCGATTCCTTCTCATGAAATGGAGGAGGCTGTTGAAGTTATTAGTTCGGTTGTGTCGAGTTTAGCCCCGCC GAGGAAGGATTTACATCTTGTTCCTATTGAGATGGTTTACTCCTCGGATTCTAGTGATGGAAAGGAGAGAATGATGAAGC TTGTGAACTCGGTGAGTGATCCTACTGGAAGGGAGGATCTGTTGCTTCATCTGCGTATGTTGGCCCTGCAAAAGGTTTGT TTCTGGAGATCATTGTCATACTATATTTATGTGTTTGAATCTTAACACTTGTGTGTGTGATTGAAAAAGGGTTCCAATCC ACTTAACTTTTCATCATTGTCCAGGTTGCTTCTGAATATGGGTATAACAGAATTGTTCTAGGATCATGCATTTCCAGGAT CGCTGCCCATGTCATTTCAGCCACAGTGAAGGTTTGTTATTTGAATTTGACTGAACCAAAGTCAGTACTAGCCTACTAGG AGTAAATTAAGAACTTCCTGTCATGACTCGTGATCCTGAATGAGCTTGCCTAATCGAATATTCTGTGCCTTACCAAATTG GTTAGTTGTGGATTTTCTGATGTGCTTTTTCTAGTTTCTCTGAAAGCATTATACTAGTAGAGTTAGTTGGTGAAGTTATA TGCATGTCGTTGGTTGCATTGACTCCATATATGAACATTTTCTATAGTACTTTAGACATTTCTTTAATAAATTTCCCTTC AAAGGGTAACATTATCAGGTTGCCTGGCTTTGGCCTCCCAATCTTAAAATATATTTTTTCAGGATTATCCTGATGGAACT CTTACGTGTGAACTATTTGAACTGAGTAATCCTTGCCTATAAGGTGATGATGCATGTACTAAGCAAATCTTTTTGCTTCC TCTTCGCATTTTTATTTCTTTAAGTTGAGCATTTTGTGATTATGTGCTATGCGGATTATATGACTCATGTCCACCTTGCT CCTGTATAAAATCAAATCGTGTTGCTTACACTTCATAGTAATCCTTATGAGTTATGACATATTGACATTATCTATGTTTG TCCTCTTTCTTTCATTCTACTTGAGAAATGAGCTTATGTAATGTCTCAACTATGTTTTTACAGGGTCAAGGATATTCATT ATCTGCAGATATACAGTATGTTGATGCTAGATGGGAGATTCCTATTGTGCTTCCTCTGCGTGATTGTTTTGTCCAAGAGA TCAACATGCTTTGCCGGCTTAACGGGTTTGTAGTCATCTGGATATGTCATAGACATTTTTTAAGAGATAAATATTGGTGT CTTTCTGTTTGTTTTGTTTCAAGTTTTTTAGAATTCACATTCTTTTGCATGTATTCCTATTGTTTTCTATGTTTTTGAGA CTGAATGATATAACTCTTACTAAATGCCAATGTCTCATGTCTTTGGCAGGGCAGTCTAAAGGCTTTGAAATTGTCTTCAG GTCCAAGCTCTAGCATTAATGGCTTGGTCTCATCTTTTGTGGCATTATTGCAGGTATAATTTGTTTTGCCTTACACCCCT TTGCTATAGACATATCCAATTTTTTGCATTTATCTTTTAAGGAAAGTTGGTTATGACCTGTTTAATGAGTGTTTTGATCC CAGGAAGCAACTAGTCTTTTTTAAAATTCTCTCACTTTTCACATCAAGTTCTCTCACTTCATATGTCGCTTTTATAAAGC AATGTCTGTGTATGTTGTTGTGAATACAGTATGAGGAGTAATCTCATGTACAACTTGTAGCTCGAAATTTGATATTTGTT TGCAGTGTGCATTATGTTTTTCAGGGTCAAGAAATTTGTTGATAGGATATATGTTATAGTACATTATGTGGCTTAATGCC TGTCTTTTCATGAAATGTGATGAGCTGGAGCCAAATTACATATTCAAATTAGAATTTTAAGTGTTCACTTTTAAGACTTG AGAACTAGAGATAGAACATCCTTATGTTGACCATTATTTACTTTTCCTTTTTATAGAATCTTATTTAATTAGCAAGTCAT TAATTTATGGCCGTTTTTGCAGGAAGAAAACCCATCTCGAGAGAGCACAATTGTAAGAACAGCTGGGAAACTTATTCCCT TCCAATTCAACAGGATTCCTGAGATCATTGATGGTAATGTTCCCTTGGCAACTCGAAGACGCCAGAAAAGATATAATCTC AAATCCAATGAATCTGTTTCCTCGGAATCTTTCTGTCCTCTTTGCAACAGCCCACTTGACAAGAGTGAGATTGTTGATTG GAGCAATCTCGATGATCGCAGAAGTAGTGACATTTTTTACACTACCTGCTGTTCAAGTTGTCAGTTTCAGATACTTCCAC AAGATTCCAAGTCAGTTGAGCAATTTTATATGGATTTACCCCAATCAGTGGTTGCCCGTGCAAAGCAACCCAACAATAGT AATTTGAACGTTCTTAGGTGAGTGTTTCTTTTGCTTTCAAGATCAATTAATTGCATTCCAAATTTGGTAATAACAAACTA AGCTACCCATCCACTGAGCCTTCTTGAAATTCTAAACCCTGACTTTTCAATGCAATCTGTTTTCTTGTAGTTAACTTCGC TAGTATATGTTATTGTTGAATGGAAGTAGGGTAAGATAAGCTATGAATATGTATAAGAGAACTTCGTATAATTTGGTAAT ATTTTTCAAATCTGATTGATCATTCTATAGCCATTTATACATACTGATTATATTTGCTAGTGTGGATTAATCTGTCCATA ATATGTACATTGCATTCGTCAATTAGTTACCTAGATAATGTTCAATTTACTGTTCCTCTGAAAGTATAGTTGAAAGATAC TTATTTTATGGTAGGAACTTCAGGGATATAAAGTTTGCTTGACAATTTCATATTTTCATGTTTTCAGGGAACAAATACAA GATTGCTTGCTTTCAGATGGTGAAGATGAAACTTAGGTTTACTTGTCTGCACTGGGGCTCTCAGTTGAAGGGATAAGTAC TGGTTTTGGTAAATTTACAGTTTGAGTGACTTAGGAGAAGTGTGTTGTTTTTGGCCTCTTGCAATACAAAGAGAGTTCTT GGAAGAAGGCAATGAAGTTAAGAACAGAATGCTGGGGCATCATGGTATCTTCATTCTCAAGATTCTGCTTTCAAGTTCAT TTGTTTCTTTTGTAATTTATGGGAAATGTTTGACCCCGACAAAAAAATAGAGAATAATTATTTTGCAATTTGTGACATTA TCTCCAGAGAATGTTTCATGTTGAAAAAAAATTCTCAGGTGAGAATAAAGGGATAAATCCTGATTGGTTAAAATTAAAAT ATAAGTCACAATATTTTTTGAGGTTAATTACTATGCACTCACAGTTTTACACGATCATTAAGTCAGAATGTATTAATTTA TCATGTGATAAACAGATTTGATGGAGAGATGTGGTTGGATTTAATGTGTAAAACTCTTCACACTAACACAAAATAATCAA CATATGCATCGAGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0673000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGCGTGCAATGGCAGTGGCGGGTGCCAATCCGGTTGCTACAAAGACGAAGAAGAGACACGCAACGAACCAACAGA GTCTGCAGAAACCGATTCGAGAAGCTCTGGTAGTATCTGCATCAAGTGCAAGCTAAACGACGCCGTTTCCGGCTACGGCG GCATCGACGATGGTCGTTTCTGCGCTGATTGCTTCAGGAGCAACTTGTTCGGGAAGTTTCGCCTCGCCGTCACATCCAAC GCCATGATTTCACCCACTGATAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCTTCCAGGGTAGCTTTGCAGTTTGTGCA TGACATGCAAGAGAGGGCCCAAAAGAACTTTGATGCTAGTAGAGATAGGTCGCTGCCGGTGTTTGGTGTTGGAGTGGTGT TTATTGATGAGAGTGTTGTTATGCCGATTCCTTCTCATGAAATGGAGGAGGCTGTTGAAGTTATTAGTTCGGTTGTGTCG AGTTTAGCCCCGCCGAGGAAGGATTTACATCTTGTTCCTATTGAGATGGTTTACTCCTCGGATTCTAGTGATGGAAAGGA GAGAATGATGAAGCTTGTGAACTCGGTGAGTGATCCTACTGGAAGGGAGGATCTGTTGCTTCATCTGCGTATGTTGGCCC TGCAAAAGGTTGCTTCTGAATATGGGTATAACAGAATTGTTCTAGGATCATGCATTTCCAGGATCGCTGCCCATGTCATT TCAGCCACAGTGAAGGGTCAAGGATATTCATTATCTGCAGATATACAGTATGTTGATGCTAGATGGGAGATTCCTATTGT GCTTCCTCTGCGTGATTGTTTTGTCCAAGAGATCAACATGCTTTGCCGGCTTAACGGTCTAAAGGCTTTGAAATTGTCTT CAGGTCCAAGCTCTAGCATTAATGGCTTGGTCTCATCTTTTGTGGCATTATTGCAGGAAGAAAACCCATCTCGAGAGAGC ACAATTGTAAGAACAGCTGGGAAACTTATTCCCTTCCAATTCAACAGGATTCCTGAGATCATTGATGGTAATGTTCCCTT GGCAACTCGAAGACGCCAGAAAAGATATAATCTCAAATCCAATGAATCTGTTTCCTCGGAATCTTTCTGTCCTCTTTGCA ACAGCCCACTTGACAAGAGTGAGATTGTTGATTGGAGCAATCTCGATGATCGCAGAAGTAGTGACATTTTTTACACTACC TGCTGTTCAAGTTGTCAGTTTCAGATACTTCCACAAGATTCCAAGTCAGTTGAGCAATTTTATATGGATTTACCCCAATC AGTGGTTGCCCGTGCAAAGCAACCCAACAATAGTAATTTGAACGTTCTTAGGGAACAAATACAAGATTGCTTGCTTTCAG ATGGTGAAGATGAAACTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0673000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMACNGSGGCQSGCYKDEEETRNEPTESAETDSRSSGSICIKCKLNDAVSGYGGIDDGRFCADCFRSNLFGKFRLAVTSN AMISPTDKVLVAFSGGPSSRVALQFVHDMQERAQKNFDASRDRSLPVFGVGVVFIDESVVMPIPSHEMEEAVEVISSVVS SLAPPRKDLHLVPIEMVYSSDSSDGKERMMKLVNSVSDPTGREDLLLHLRMLALQKVASEYGYNRIVLGSCISRIAAHVI SATVKGQGYSLSADIQYVDARWEIPIVLPLRDCFVQEINMLCRLNGLKALKLSSGPSSSINGLVSSFVALLQEENPSRES TIVRTAGKLIPFQFNRIPEIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEIVDWSNLDDRRSSDIFYTT CCSSCQFQILPQDSKSVEQFYMDLPQSVVARAKQPNNSNLNVLREQIQDCLLSDGEDET
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
15 29 15 - –
MobiDBLite
mobidb-lite
15 34 20 - –
PANTHER
PTHR20882
20 456 437 6.3E-121
IPR019407
Hamap
MF_03054
34 413 380 21.817
IPR019407
Gene3D
G3DSA:3.40.50.620
39 395 357 1.2E-39
IPR014729
SUPERFAMILY
SSF52402
63 288 226 2.14E-16 –
Pfam
PF10288
299 384 86 1.3E-7
IPR019407

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0034227
Biological process TRNA thio-modification The addition a sulfur atom to a nucleotide in a tRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0673000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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