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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0675100 |
| Transcript ID | LotjaGi1g1v0675100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|O82458|O82458_LOTJA Rac GTPase activating protein 1; Found in the gene: LotjaGi1g1v0675100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124226569..124231210) extracted from Lotus japonicus Gifu genome v1.2.
AAGATATCCGTGAGATTAATTTCTCAATCTAAATATAGTGTTTTATAATACTAATTAACAAGATTAAAAATGAAAAGGAA TGAAAGAATTGTTGGGGTCTTGTTTGTGACATGAGTGGAAGTGGATTAGAAGTTGTATTGCACATGTAAACATGATTTGG AATGTGTGAGGTGTCAGCATCTTCTTCTACCAGTGCCACCTTCAAATACCAACATAGAAATAAAAAATCACAATCTCTTC TTCTTCTCTCTCCTCTGTTTCTCTTCATCTTCACTTCACCCTAACCAACCACCTCTCCCTCTGCTCTCGAATCTGGATTC GGGTCGGGTATAGCGAGAAGTCGAAGGCACAGTGTTGATGATGATGGTGATGATGGTCACGTTTCACCTTCCACTCGAAG ACCCCATTTCTTGAACGAAACTCCACTCCATCAACGAAGAAGAATATTATTGTATTGAAGAGAAAGAGACAGTAGTCAAA GATGACAGAAGTGTTGCAGTTACCTTCACCTTCACGACGTTGTTCCAATGATGGGTCGCACCAAACTGCGCTTATTAACA ACAGTTCCTCAGTGGAAGAAGGGGTGTTGCAGTTGCAGACCCATTTGGATTTGGTTGAAGAAGACGAAGAGGAAGAGAAA GAAAAGGACAGGGAAGGAGATCAGCTTTCTCTTTTGACCCTTTTGATTGCGACGTTTCGGAAATCGTTGATTGGTAGTTG CAGCACCAGTCCTAGAGATAGTGGTGCCCTTTCTTCTTCTTCAATGGAGATTGGTTGGCCTTCCAATGTGAGGCATGTGG CTCATGTTACCTTCGACCGCTTCCATGGCTTTCTTGGTTTGCCTGTTGAATTTGAACCTGAAGTTCCCAGGAGACCACCC AGCGCAAGGTTTGTTCTCTTTTTCAAATTGGGTTTGTTCAAATTCAATTGAAGGCTTGATTTTCAATCTTTCTTGAACTG ATCTGTAATTTTATTGCGCGTTTGAACATGATTTGTGCCACTGGAATGGTGTTTTCTGTGAGATTGGGTTCTCAAATGGG AATTTTCATGGAAGCCTATGTTCCAATTGCTTCAATTCTTATTTCTGAATGAATGTAGCATATTCTTAGTTCTGTTTCCG TATTGAAAATTTAATTTTTAGGTGATTATCTGGTGATTGTGTTTCTATCATCACAAAAACATGGATACATAATTTTTAGT TCTGTTTCCATATTGTGGTTTGTTTGCCCCTCTGTCTTTTTACTGCTCCTGTCAAGCTTGAAGTTGATTAGTTAATAGAT ACAATTGAAGGGTCTCTAGACTATTAGGTATCTTACTGATAAAATGGTACTTGTTTATCTTGTAACTTGTCATCTGAAGT GGGTTTGGTTCATTGTAAGGAATAAATAAACAAACAATATGAGAAAACTGAGAGGAAGGTAAATAACATTGGTTTAGGTG CTTTGTTTCATCCTTGTTAATTATGCCACACATACCTTTTATTTCCTTGTTGTTTTTTGTTGTCAGATTTTTCCTTTGAA CTTTTGGTGCACTTCATCAATGGTGTTGGTTTGTCATCAGAAATTAATTGATTGATTTTTCTTGTAACTGGGTTAACACA TAATAATAAACCCGATGATGTATTTTTACCTTTGTCAGTGCAGCCTTCGTCGATACAAATGCTTAGCACTTTATTTGATG TTAACACACGACCTATCTATTTGTTCATCTACTCTCTGGAAATCTACATGTCTGGTGAATGCATCCTGACTTATCATCTC GTTGAATGTTGATATATTTTCATTTATTATCCACAGCACAAGCGTTTTTGGGGTTTCAACAGAATCTATGCAGCTTTCTT TTGATGCCAGAGGAAATAGTGTACCTACAATATTGCTGTTAATGCAAAGACATTTGTATGCGCGAGGAGGCCTCCAGGTA CTTACCCTAGCTCCTATATCATTCCTTTGTCTAGTTAGTTAGCATGTGAAGTTTATTTGAACTGATTAGGTAGTTGAACA AATAATGGTGAAGGAACAATTTCTATACATATAGTTTTTTTCTTTGTTCGCTTTTGACCAGAAACCTTTTGTATGGTTTG TTGTTTAACTTCAATGGACTTTAATCTTGAAGCTGAAACTTAAATATACATGCAGGCTGAAGGAATATTCAGAATTAATG CTGAAAATAGTCAAGAGGAGCTTGTGAGGGAACAATTAAACAGAGGAGTTGTACCGAATGGCGTTGATGTGCACTGCTTG GCAGGTCTTATAAAGGTATAATTAAATTTTAATTTTCCTTCAATGTATCTCTTTTTCAACATTTTAGAAGTTTAGTTGGA TATAGGCTTTTGGATTCCTCGGTTTGGGTCCTATCTTCTAAATAAAAGTTGGCTAGGTGATTAAGATCAATGCAGTAATG TTAATTCTTTTCCTTTTGTTTACCATGGGGCAGAAGGGTGGATGGATTGAAGAGGCCACTAACTCATTAAGGAAACTATA TTAATGGGATTATTTCCTTAATTTTTATATAATTGAGCTCCTTTGCAGGCTTGGTTTAGAGAACTCCCAACTGGAATATT GGACCCTCTTTCACCAGAGGAGGTGATGCAGTCCCAGTCAGAAGAAGAATGTGACCAGCTTGTGAGGCTTCTTCCTCCAA CAGAAGCTGCTCTGCTAGATTGGGCCATAAACCTAATGGCAGATGTTGCTCAAATGGAACATTTTAACAAGATGAATGCG CGTAATATTGCAATGGTTTTTGCACCAAACATGACTCATGTAAGTGGAAATCACATTCTTTTGTATATTAATTATATTAT TCTACACTTAGCCCCAGCTTTTGTGACTGAATTTATACTAGTTAATTAGATATAATAACTTCAACTTGTGGAACAGACAC TTTTTATATGTTTATATCCTTTCTTCCATGTCGTTAATATAACTGTCTTCTATTGATCTCTTGTGGATGATACCTGTGGT AAAAGAAACCTGTGTTATAATGCATAAAACATAATTATATTATTAGTTGATTTTATTCCCTCCCTCTAGAAGGGTTACAG AGATTTTAAAGAGTTGCGAAAACATACTGATGTAAAATGGGTAAGCTGTTTAGGATCTGAATGAAGTTAGGGTTCTCTTG CTATGTGGTTCGGTTATGTTTGGTGTACAAGTACCATCATAGTAGCAATTTAGAGCTGCTATTATCTGGGCATATTGTTC TACTACATCATATAATCTTTGAGGAATAGTACACAATCCTGTAGATGCTTGTATTCGTACAACCTTTTTTCAGTTTATTG TGCACCAATAACAACATTCTGACTTAACTGGTGTGTGTGATTAGTACTCTTTTTACTTTTTTGTCCTGCTTGTTATGCAA ACGTATAGTATTGGACTGAGGTTATGATTGTTAATCTATGGCACAATAACCGCATTTCTGACATGTCTATTGCAGATGGC CGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACTCTTGTCGTTAAGACACTGAGAGTAA GAGAGGAGTCCATTGTAAAATCCAATCCCGTTCCAAACCTGAATTCTTTTGATGATGACGGGCACCAGAGCGATTCACAA GTGCTCCCCAAGGATGGCAGTGAAAATGGAAATGATTGTAGTGATGAGGATACAGTATTTGTCTCTGCAGAACCATCTCA ACCAAGCCCTACCCATCATACTGAAGATGGCTGTGAAACTGAAAGTGGATCCGAAACTTCGCCAACGCCTGCTGAAAATT TTCTCTCTAGTGGAAGTAGGTTGTTGATTGATAGTTGTCCTTGCAATGTTGTCTCCCAACTTTGCTCGTTTGCAATTGGA CTTCAAGACTCTAGCATTGCTACTGGTCAAGCAAAAATTAGCAGGAGCAAAAGCCTTCAAATGAGTACTTCTGATATAGA CAAGAGTTTCAAGAACGTGATCGAGTTTCCAGTAGTAGGGCCTGCAGAGAAGAACAGGGGAACTGCGATCATTGGGCGTA TAAATTCAAGAACAGAGTTGACTGAAGCTTGGCGTTGAAAGTCGTCCGATTTTTTTCATCTTGCTGCCTTGAGGGGCTGG GATGACAGAAGATAACTGGTGCTCCAACAATGTTTCAATTGTGATTTCAGTAACTATGAACCTCTTTGTGAGTTGCATAA TTGCTGATGAACATAAAGGAGTGCATGCATAAGCTCTTTCCAGGATAGCAAGGGTGTAAAGAGGTCTTTGTGTGTTCCCA CGTTCTGGAAAGGCTTTACTGTGATTTGGTGTGTATTTTCTGTTTGTTTTTGGGTGTTTGCCTTAACCATATTTTTCATT CTATTTCATTAACCTTTGCAGACTCGTAACATTTTTTCTTTCTGGTTCATGAAGTATAGAGTTTAATGAACTTCGAAATT GCTACGTTAACCACACTTTTTTGTTTACATTTTGAGTATGCAAGACTGCATGGTCATTACTGTGAAGTCTTGTTTATCCT TTATAGCAGCTATGTATGCTGACACTCCCTTAAAAAATTGCGGTAAAACATTCCATATCCTGACAATGCATACGGACAAA ACACCAAGTGGAAGCCAAAGAGCTCTCTATATTTATATTTCGCCGAGCTATTTCAGATTTGACATAACACATCTTAAGAT TG
CDS sequence (LotjaGi1g1v0675100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAGTGTTGCAGTTACCTTCACCTTCACGACGTTGTTCCAATGATGGGTCGCACCAAACTGCGCTTATTAACAA CAGTTCCTCAGTGGAAGAAGGGGTGTTGCAGTTGCAGACCCATTTGGATTTGGTTGAAGAAGACGAAGAGGAAGAGAAAG AAAAGGACAGGGAAGGAGATCAGCTTTCTCTTTTGACCCTTTTGATTGCGACGTTTCGGAAATCGTTGATTGGTAGTTGC AGCACCAGTCCTAGAGATAGTGGTGCCCTTTCTTCTTCTTCAATGGAGATTGGTTGGCCTTCCAATGTGAGGCATGTGGC TCATGTTACCTTCGACCGCTTCCATGGCTTTCTTGGTTTGCCTGTTGAATTTGAACCTGAAGTTCCCAGGAGACCACCCA GCGCAAGCACAAGCGTTTTTGGGGTTTCAACAGAATCTATGCAGCTTTCTTTTGATGCCAGAGGAAATAGTGTACCTACA ATATTGCTGTTAATGCAAAGACATTTGTATGCGCGAGGAGGCCTCCAGGCTGAAGGAATATTCAGAATTAATGCTGAAAA TAGTCAAGAGGAGCTTGTGAGGGAACAATTAAACAGAGGAGTTGTACCGAATGGCGTTGATGTGCACTGCTTGGCAGGTC TTATAAAGGCTTGGTTTAGAGAACTCCCAACTGGAATATTGGACCCTCTTTCACCAGAGGAGGTGATGCAGTCCCAGTCA GAAGAAGAATGTGACCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCTCTGCTAGATTGGGCCATAAACCTAATGGC AGATGTTGCTCAAATGGAACATTTTAACAAGATGAATGCGCGTAATATTGCAATGGTTTTTGCACCAAACATGACTCATA TGGCCGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACTCTTGTCGTTAAGACACTGAGA GTAAGAGAGGAGTCCATTGTAAAATCCAATCCCGTTCCAAACCTGAATTCTTTTGATGATGACGGGCACCAGAGCGATTC ACAAGTGCTCCCCAAGGATGGCAGTGAAAATGGAAATGATTGTAGTGATGAGGATACAGTATTTGTCTCTGCAGAACCAT CTCAACCAAGCCCTACCCATCATACTGAAGATGGCTGTGAAACTGAAAGTGGATCCGAAACTTCGCCAACGCCTGCTGAA AATTTTCTCTCTAGTGGAAGTAGGTTGTTGATTGATAGTTGTCCTTGCAATGTTGTCTCCCAACTTTGCTCGTTTGCAAT TGGACTTCAAGACTCTAGCATTGCTACTGGTCAAGCAAAAATTAGCAGGAGCAAAAGCCTTCAAATGAGTACTTCTGATA TAGACAAGAGTTTCAAGAACGTGATCGAGTTTCCAGTAGTAGGGCCTGCAGAGAAGAACAGGGGAACTGCGATCATTGGG CGTATAAATTCAAGAACAGAGTTGACTGAAGCTTGGCGTTGA
Protein sequence (LotjaGi1g1v0675100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEVLQLPSPSRRCSNDGSHQTALINNSSSVEEGVLQLQTHLDLVEEDEEEEKEKDREGDQLSLLTLLIATFRKSLIGSC STSPRDSGALSSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRPPSASTSVFGVSTESMQLSFDARGNSVPT ILLLMQRHLYARGGLQAEGIFRINAENSQEELVREQLNRGVVPNGVDVHCLAGLIKAWFRELPTGILDPLSPEEVMQSQS EEECDQLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKTLVVKTLR VREESIVKSNPVPNLNSFDDDGHQSDSQVLPKDGSENGNDCSDEDTVFVSAEPSQPSPTHHTEDGCETESGSETSPTPAE NFLSSGSRLLIDSCPCNVVSQLCSFAIGLQDSSIATGQAKISRSKSLQMSTSDIDKSFKNVIEFPVVGPAEKNRGTAIIG RINSRTELTEAWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 492 | 492 | 7.4E-217 | – | |
| PANTHER | 1 | 492 | 492 | 7.4E-217 | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Gene3D | 91 | 126 | 36 | 2.0E-6 | ||
| CDD | 95 | 135 | 41 | 1.97498E-7 | – | |
| Pfam | 96 | 123 | 28 | 1.8E-4 | ||
| SMART | 97 | 131 | 35 | 2.1E-7 | ||
| ProSiteProfiles | 97 | 110 | 14 | 7.406 | ||
| Gene3D | 130 | 330 | 201 | 4.9E-36 | ||
| SUPERFAMILY | 136 | 315 | 180 | 1.82E-38 | ||
| ProSiteProfiles | 142 | 327 | 186 | 27.831 | ||
| SMART | 156 | 319 | 164 | 6.9E-38 | ||
| Pfam | 159 | 294 | 136 | 1.3E-22 | ||
| CDD | 159 | 314 | 156 | 6.41039E-34 | – | |
| MobiDBLite | 330 | 381 | 52 | - | – | |
| MobiDBLite | 330 | 401 | 72 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0675100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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