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LotjaGi1g1v0675900.1

Overview

Field Value
Gene ID LotjaGi1g1v0675900
Transcript ID LotjaGi1g1v0675900.1
Lotus japonicus genome version Gifu v1.2
Description Iron-sulfur cluster insertion protein ErpA; TAIR: AT5G03905.1 Iron-sulfur cluster biosynthesis family protein; Swiss-Prot: sp|Q8LCY2|ISAM2_ARATH Iron-sulfur assembly protein IscA-like 2, mitochondrial; TrEMBL-Plants: tr|I3SBC4|I3SBC4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0675900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:124288601..124292639) extracted from Lotus japonicus Gifu genome v1.2.

GTTGGATGGAAAATGTGTCGGAAAGGACTAAAAACAAAACATGTAATTTTGGGAGGATGTTAAATAAAAAAAATTACTTT TCAGGGAAATGGAGTATTTGGACAACATGGTCAATTCTGAACCGTTCATTTTAGTTTGATGAGGTGGCTGATTCTGAGCT GTGAGATAGGCTGAAATTTCAGTTTAGGTCCCTGTGAGGAATACGCAATCGCAGAGAAAGAAACTGAGAAGCCATCAATG GTGGTTTAGAGAGAGAAAGAGAGATGCAGACGTCGTCACTGTTTCGACGCCTGGCTCCGTCGTTGGCAGCTCGATTTCGA CAGAACCAGAAGCTTACAAGCTTCTCTTCTTCTTCTTCTTCTTCTGTTCTTCACGATGCAACCACTTCCTCTTCTTCTTC TTCCCACGTGGAGCCTGTTCACATGACCGAAAATTGCCTTCGGGTATGCTCGTTGCGCTCTATAGCATCTCCTTTTTATC TGATTCTTCGTGTTTTCTGTGTGAGTCGATAATTTTGTGATCTAAGAGCAGTTTTTCGAATCATTCAAAGGGTTTTTCAC GGATTATACACGTAGAGGCACACAAGATGTTTGTTATAATGCACTAATTTTGAAGATTCATGAAATTCACATTTGTTTTG ATTGATGCACCTTCTCCCCAATGGTTGTGGTTACGTTACATATGTATAGCTTAGGAGCTATGTAATATTACTTGTAATCA ATTCCAATCCATTTCTGTAACTTGTTGAATATGGAACAGAGAATGAAGGAATTGGAAGCCAGTGAATCAGCAACTGCCCC AAAAACGCTTCGATTGAGTGTAGAAACTGGTGGATGTTCTGGATTTCAGTATGCTTTTGATCTGGATGACAGAATCAACT CAGATGATAGGTATTTATTAAGCTGCCATCTGTGTATTGGGCCTGAACAGGCTAAACCCTTGTATTTTATAAATTTGAAC TTATTTTGCTTAACATATTATTGGCAGAGTTTTTGAGAGGGAAGGAATTAAGCTGGTTGTTGACAATATATCATATGATT TTGTGAAAGGCGCGACTGTTGATTATGTTGAGGAACTAATTCGTTCAGCTTTTGTGGTAAGTTAAGTAGCAAGAAGCATT TCTGATAAAACCAGTGTTTATTTGAAACTTGTCAGGATCCATTGACACTTATGTCAATATTAGCATACTTACACATTTAA TAACTTTTTCTAGAGTGCCAAATCAGTTAATCCCATCTTTTAATAAATATTATATATTATTTTGATAATTATGTTTACAG CATTTCAGATAATTTAGATACTTTTAGGTATGTTATTTAATAGTAGATACTAGTGCATTATGTGTTAAAATGAAGTGATG TGGTGATCTATTAATTAGTTTTTGAATTATATGAAATTTTGTAGGCTTGATCTACTTGATGAGAATTTCATAATCAATTT GGATTGATAAAATTCACCATTTTTAAAAGGTTATTGAATGCACAAATATGTTCGTATTGACACTTGGACTTGGTCTCATG GGATCCGGACTCATTTGTAACTGTCTTTCACATGCTTGCCTTGGCACTTCATAGCTATGACATTGTGAAACTGCATTATA ATTAGATTATGATAAAATCAGGGTTGTCAAATAGAGGTGCCATAGCGCCGTAGCGGCCCTTGGCCGCTCCTAGTTGTTGC ATAGTGGTGCAGTTCAGTGTAGCGGCTGTTACAGCCGCTAAAGCCAATGAAATAGTATCCGTAGCGGTGCTATTTTGTGG GATTGATAAAAACCTATAAACAACCCTCAAAAAGTTCATGCTAGGGCATATTGAGGAGGTATTTCAGGGTTTCCACTTAG GAAACATAATGAAAATGGTCTACTTTGAGGAGGATCCAGGAAGTGATATAGAACTTTAATGTTTTTAGGCAGTTTAGTTT AGGAGAGACATAAACCTCTTGGTTTCCTTGACTTTTGTTGGTACTAGTATGTTTTGCTTAATGTTAATTATGAGTGCCAT GTTTTTTGACAATTTTTTATCATTGATATATATATAGTTTTATTATATAAACTAAACAAAATATTCAGCATAGCGGTCAT GCCGCTATGAGCTATACCACAATAGCATTTTTTTGGTCGGCCGCTATGCACTGCTATCCGAGATTGACAACACTGGGTAA AATCATGGAAGAAAGTTTCTGAGATCTACATACCATATAGTTTTCTGTGAACTATAATAAGAATTCACATCCTGTTATCC AGTTATATTATGGATAATTTGAGAACTTCTATCTGATTATCCATTTATGAGCCATTATCTATCAACAATTATCTATCAGC ATAAGCTTTCAGAAGAGTCAATTAAAGTCTCTATGATCTAGTAATAAAGAGTTTGATCCTTGCCTTCTTTGCTGAAATAT AAAAGTCGAGTTTTAGCACAAGATAGAGGAAGCACGCTCATGTGTTCATGCTTCAAGCACAAAAGACTTTTGTATGAGTG AGAGTTCATGTTAGATATTAAATTGTTCTAGTTACTTAACTATTTGAGCTATTATGAGAGCTGCTCCTTGTTAAGTTTTA CTAGTTAAGTTAGTATAAAATCTTTATTCAGGTTCAGATTGGAATCCAATGTCAATAAAGCCCTGTTCCATTTTTTTAAG TTTCATAAATTCAAATAAAATAAAAAAGAAATGTGTGTCACCTTTTCATGTATATTTTCCATGGAAATCCTGCTCCTAGT TCTCCAAATAGATTCTCATTTTGCGACCATCCAAGCAATATCTTTAGATGCTTTTAGTCTTTTCATAGAAAAACGTTATA GTGCTCCACTGTTCTACACATTTTAGGAACATATCAGCATACTATGCTGTAAGCTATTTGGTGTATTATAGACCAGCATG TTGCATTGTCTTGTTATGTGGATGTTGCAGTTTCTCTTCTGACTGAGCTTTTGCTTGGGATGGTTCTCTTCCAACTCCAG TCATGTTTTCAAGGCACACCTCCATCGAGAGTTCAAACAAAGCTGGAGCTGCCACTGGAGATGTGCATGGAAAATGTAGC CTGGCATTAGAATAAAGTTGTTCATGGCAAAATGATGCCCAGGAAGAGAAACTATAGCACTAATCCACTAACCATAAACC AAGGCTACATGATGTGCTCCTAAAACTGCCACTTTTGTAATTTGTAAAAAACTTGGAGCATGATGTGCTTCTAAAATATG TAGAGAATCATAGAAACTTCCAATTTCAAAATGCATCATTCCATTATCTTTGGTTAACAAATGAAAGCAGCACATTCTTT GATATTTCTTTTATTGCATGAGATTTCACTTAATAATAAAGCATGATATTTCTCGCTTTGATTTTGCTATTGTATGTACT TTGTAATTGCAGTTAGTCATACCTTGCTGTGCTCCAATTAGCCTAAAAAATAAAAGACTTATTTCTACATAATTTCAAAT TCATGTTTTGTCTTATATGTTTCATGGCATTATTTCTGTAATAGAAAAGGGGACTGTCTCGCAGTCAGACCCTTAAACCG TGTGTGCTTTTTAAACCAAATCCTTAGGTTGCATGTGAGACTGTAGAGTGTATGGAATTGAAATGGGCGTGTGAGAGTAT GGAATTGAAATGAGCATGTGAGAGTGTATGGAAAACAGGGCTGTGTGGCCAAAACTAATCTTTATTAGTTTTAATAGCAT TCTTGAGACATTTAACCAAGGACAATTTTACAGTTTCTGGTTTCATTTGCAGGTGACTGAAAACCCTAGCGCAGTTGGTG GTTGCAGTTGTAAAAGTTCCTTCATGGTGAAACAGTAATTTCTTTTATGCAGTGGAACTAGATTCTGTTAGGAAACATGA TTTTTGTACCTTAACAAACGATTGATTGAACTGAAGATGAAATATATTGCTTGTATAATGATATCAATGTAATATTCACT TGTATTTAATAAATTGTCAGGCATTTTTATCTAGCCTGTTCTGATAATATGAAATGAAGCTTGAAGTGATATTTACATCG AACTAGACAGCAAGTTTCTTGTGTAATGCCATACATGGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0675900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGACGTCGTCACTGTTTCGACGCCTGGCTCCGTCGTTGGCAGCTCGATTTCGACAGAACCAGAAGCTTACAAGCTT CTCTTCTTCTTCTTCTTCTTCTGTTCTTCACGATGCAACCACTTCCTCTTCTTCTTCTTCCCACGTGGAGCCTGTTCACA TGACCGAAAATTGCCTTCGGAGAATGAAGGAATTGGAAGCCAGTGAATCAGCAACTGCCCCAAAAACGCTTCGATTGAGT GTAGAAACTGGTGGATGTTCTGGATTTCAGTATGCTTTTGATCTGGATGACAGAATCAACTCAGATGATAGAGTTTTTGA GAGGGAAGGAATTAAGCTGGTTGTTGACAATATATCATATGATTTTGTGAAAGGCGCGACTGTTGATTATGTTGAGGAAC TAATTCGTTCAGCTTTTGTGGTGACTGAAAACCCTAGCGCAGTTGGTGGTTGCAGTTGTAAAAGTTCCTTCATGGTGAAA CAGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0675900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQTSSLFRRLAPSLAARFRQNQKLTSFSSSSSSSVLHDATTSSSSSSHVEPVHMTENCLRRMKELEASESATAPKTLRLS VETGGCSGFQYAFDLDDRINSDDRVFEREGIKLVVDNISYDFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSFMVK Q
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43011
4 161 158 9.5E-67 –
MobiDBLite
mobidb-lite
28 53 26 - –
MobiDBLite
mobidb-lite
28 52 25 - –
Pfam
PF01521
52 154 103 3.6E-13
IPR000361
TIGRFAM
TIGR00049
52 159 108 3.1E-33
IPR016092
Gene3D
G3DSA:2.60.300.12
52 161 110 1.6E-32
IPR035903
SUPERFAMILY
SSF89360
52 147 96 3.34E-25
IPR035903

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005198
Molecular function Structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
Subterm of
GO:0051536
Molecular function Iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
Subterm of
GO:0097428
Biological process Protein maturation by iron-sulfur cluster transfer The transfer of an assembled iron-sulfur cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0675900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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