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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0680000 |
| Transcript ID | LotjaGi1g1v0680000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase-like protein; TAIR: AT5G03740.1 histone deacetylase 2C; Swiss-Prot: sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1; TrEMBL-Plants: tr|I3T597|I3T597_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124734134..124738487) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCACAATATTGTATTGCGAGCACTCAGCGCTCTTCTCTCACTCTCACCGCTCTCGCTCTCGCTCTCGCTCTCGCTGC AGCAACCATGGAGTTTTGGGGTAACACTGCTCTCTCTCTCTTCTCCCCTCTTCCCCTAACCCTAACCCTAACCCTACTCG TATCTCTCATCGTTTACCTTCTGTATGTTGATTTTCCCTTTTTTCACTGTGAAATCATTTCAACTAGTACTAATCGTTGA TCGTTCGTTTTATGGGAGCGAAGTTTCTGTTTGCATGTGTTGTTGAACTCGTGCTTTTGCTGTGTCTATTACATTACCCT GTCTCTTCACCATGGATATTTCGATTTTCGATTTTGTGTATGGTTTTTCTGCATGATTAATGTCATTAGGTTTTGTGAAT TTTGGTTTATGGAGAAAATTTGCGGAATTACGATATGGTTAGGGTTTTGGTCACAATTATCATCACCAACGATCCTGCTT GTTATTTAGCACCACCACCATGTAGTAATTGTTTGTTGACTGAAACAACATTGTTGTCTTTTGCATCCTCGTAGATATAT AGTTTTTCACTTCACAGGTCTGTCATCAAGTGATGGAGTTTGTGAACAAATTCATCACAGTACCAAAATTTGAGGGATAT TGAAGGATACTTCTATTTGAATGTGTCTTCCTTTAAAATATTTGAATCTCAAGTTTCTGTTGTAGTTTAGATACAATGTA GTACAGTATTTTATATCAACTTTTGATAATGAGGTTTTTAGGGTGGTTCTTGAATCTTGAGCAGTTGCAAAATTAGTTCA TTTGTTTTGCTGTTTGGTTTTTTGCATCCTGTTCATTACAGTATCAAACCATGGTTGTATGATAGAAGCACAGATTTTGA TACCAAATTTCCGTAGAGATTTGTATTGATGTTACATTCCAGGGTGATATTGATACTTGATACCCTAACAGGCATTTATA ACTTAACATCGGATGTCTATTATCCTTTATAGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGAAGATG ACAAGATTGTCCACCTTTCAATGGTATATGCTTTGATTAATGACACATCAGCATTGATTCATTCTTCTTACTTGAAACTG ATAATGGTTTTGTTGACATGATTAATTCTCATGTGACAGGCATGTCTGGGCGATGTCAGTAAGGATAAAGGGAGTGAAGC TGTATCCGTCTACGTGAAGTTTGGTGACCAGAAGCTTGCACTCGGAACACTCTCTGCTGATAAGTACCCTCAGATATCTT ATGATTTGATATTTGAGAAGGAATTCGAGCTATCCCATAACTGGAAACATGGCAGTGTCTTCTTTACTGGATTTAAAGCT GAATCTCAGGCTGTATCATATCCTTTTTAATGCTATTTTACTTTGATAGGAGATTAAATATTGTCTTAGCAGTTAATATT AGTGCATTTTATGTCTCAGTTCTCACATAAATACTTTATATCCTTGACTTCATTCTTCTTCTATCATTACTGACGGTGAC GATGAAGATTCTGATGGTGAGATACTCTTCCTGATATAGTTTTATTATTATTTTACCATTTACTTGCCTCTCAACTAATT CTATCACCTTTATTGTAGATTCTGATGGTGAAGATATCCCAATTAGTGTTTCCAATGGTAAATATACCCATCTTGTGTAG TTCTATTTTCTTAAAGCAGTTTATTTGAGGGGCACAGTCCCCTTACCCTAAACCAAAAAAAGCAGTTTCTATAGTTTATA TTTTGAACATTTATGTAGGGAAACCTGAGATTGAGGTGAAGAATAGTGCCAAGCCTAATGCAAATGAGGCTAAACAAAAG GAGAAGATAACAGATCTGAAAAAGAATGAGAACAATAAGGGAAAAGCTGCAATTGCTGAAGATGAAGAAGATTCTTCTGG ATCTGACACTGATAATACTAGTGAAGATGAGGTATTCATATAATCTAGAACGTGATTTATAATATTTAATGGATTGTTAA TTGTCTGAAAGTTTATTATGTGAATAGATGCTGATGCACAGATTTGTTTGATAGGATCTAATCTTCCAGCTGCTATTATT GAATGAAATTAATTGCTTTGACAAAACTGGTGATTAGTCAGAAAAGGCAGAATACTCAGTTTTTGTGCCAAAAATGCATG GCTATGCCGTTGCTAGATATATGAGAGAAACTTTATCCTTTACAACTAAAGCATTCCTGTGATGATTCCTTTGGTTGGAA CCGCATACAAGCATTAAGCATGCACAAAGTCATTACTTGTGCACATTCCCGCATATAAGAGGATTTGGTTTTCACATGTA TTTTTGCTCTTGTTTTTATTCCCGTTAGTTGTATTCTCTCATGCTATTAGATCAGTTTGTGACAATAGAGTTTATGCATA ATTATTATAGTTCGGATTGGTTAGCGGTTGTTCAACTTTTCCCCAGAATCCCTTACTCATGAGTCTGCTGCTCTGTCATG ATAATAGTCCTCAACTGCGTGTTCCAAGTTTGATTTTAAAATATGCTTGTCTGTCCTATGTGTTTGTAATTTGAATGATC AAATCTAGTAACCAAAACAATTGAATGATCAAATCTGCTGGCCTATCATGATAACAGTCCTCAACAGCCATAATTCTGAT CAGTGATTTAGATTATAGGATATTTTAAATTACTGGTATTTATGTTTGTTTTGTTAATTATTGCTGTCTTTTCCTATAAT GTATTGTTTAGCCAATGCCAAATGGTGGGGTAGATAGTAGTGAAGATGATGATGATAGCGATGACGACGATGATGAAGAC GATGATGAGGATGAGGATGATGACGACGATGATGAGGAAACACCCAAGAAGGTAAAGAGGGACTATACTTTGCTTCATAT TTGTTGTTGATTTTGAATTTAACTTTTGTTTTGTTATAGGCTGAAGGGAGCAAGAAGCGGGTCCTTGATTCTCCTAAGAA CACCCCTGTTCCTGTGAAGAAAGCGAAATTTGTTACTCCTCAGAAGACTGGTCAGTTTTTTGTTTTTGGGTACTCATTCT TGTGTGAGATTTGTTTTTGTGAATTGTAGATTATGTTTTTCACCCCCATGTGCAGCATTTTATTGGATACATATGTTCAT TTTGGGCATGTTAAATTGGATATGGATGCTCATATTTGGGCACGCTAAACTGGAGACAATTATTAACATGTGAATAATGT CATCTAGCAAGTTACAATTAAGATGTGTGAATAATGCTCATATGTATAAGGTATCAGAGTAGAGCGGTAGCTAATAACTA CATTTTGTTTTGGTACTTGGTATCACGGTATCATGGCACCTAGTTTGTCCCAAGAATGTGCTACTTACCAAGTTACATTT TCCTGGAGCTGGCATTTGCAGTAGGTTAAAGTTAAACTACCTTGTGATTTATGATTCACGGTATAACTTATTTGGGCTAA AGTACGGTTAAACCACATTTTCTCCAACTCGTGGACAATTAAAGTTGGTAGTCATAATTTGGTTTTTTGGTTGGATTAAT AAAATGAAACAAAACTGGAGGACAGAAGTACCATTACCATTAGGAAACAAAACAAATCTGGGATTGCTAGTTTAACCACG TTTCACTTGTCTTTCTGCGCATGAATGTTTGCTGTTAACACAGTAAAATTGTAATGACATTGATGATAATTTATGATCTG TTTTCAGATAGCAAGAATGTTGCCCATGTTGCAACTCCTTACCCTAAGCAGGCTGGTAAGGCATCTGCAAGCACTAAGCA GCCAGCGAAGCCGCAGACTCCAAAGTCAGGTGGAGAATACAGCTGCAAGCCTTGTAACAGGTGATTGGAATTGTCTTCTT CTCATATTTATTAGGCTTCTTATTCCCCTTTCCTTTTTATCCTTCTAAATAATCTGGTTCGTATTGGTTGACTCAAATTT TATATTTCCTTGCAGGTCATTTAAGACTGAAGATGCCTTAGGTTCTCATAACAAGGCCAAGCACAGTGCAGCTAAGTGAA GGGTTGATTGTCAGCTTTTGACCTGAATAGTGAGCATGTCAATGTTTTTGAATTTCCGATGACTGAAAAAACAGTTTAGG TGATTTGGGAAAGCTAGACTAGTAGTTTTGGTTTTGTTGAGGTTATTATTCAACTTGGATTTATCAAATTTGAAAACGAA TCTATTTTCTGGCTACATTTTCCGTTCCCCTCCGTTTACGCATACAAATGCTTGCTCTAGTATGGTTATATTAAACTGTG CTCGAGTAATAAATTCAGAACGAGTGTTACGTAATGGAATTGGAAACATCTGTTTCTATAAGAGACTTGAGAACAATCAT ACATAGTAATAACAAAGCTTTGTTTTTTTGTCAA
CDS sequence (LotjaGi1g1v0680000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGAAGATGACAAGATTGTCCACCTTTC AATGGCATGTCTGGGCGATGTCAGTAAGGATAAAGGGAGTGAAGCTGTATCCGTCTACGTGAAGTTTGGTGACCAGAAGC TTGCACTCGGAACACTCTCTGCTGATAAGTACCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTCGAGCTATCC CATAACTGGAAACATGGCAGTGTCTTCTTTACTGGATTTAAAGCTGAATCTCAGGCTGTATCTGACGGTGACGATGAAGA TTCTGATGATTCTGATGGTGAAGATATCCCAATTAGTGTTTCCAATGGGAAACCTGAGATTGAGGTGAAGAATAGTGCCA AGCCTAATGCAAATGAGGCTAAACAAAAGGAGAAGATAACAGATCTGAAAAAGAATGAGAACAATAAGGGAAAAGCTGCA ATTGCTGAAGATGAAGAAGATTCTTCTGGATCTGACACTGATAATACTAGTGAAGATGAGCCAATGCCAAATGGTGGGGT AGATAGTAGTGAAGATGATGATGATAGCGATGACGACGATGATGAAGACGATGATGAGGATGAGGATGATGACGACGATG ATGAGGAAACACCCAAGAAGGCTGAAGGGAGCAAGAAGCGGGTCCTTGATTCTCCTAAGAACACCCCTGTTCCTGTGAAG AAAGCGAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGCCCATGTTGCAACTCCTTACCCTAAGCAGGCTGG TAAGGCATCTGCAAGCACTAAGCAGCCAGCGAAGCCGCAGACTCCAAAGTCAGGTGGAGAATACAGCTGCAAGCCTTGTA ACAGGTCATTTAAGACTGAAGATGCCTTAGGTTCTCATAACAAGGCCAAGCACAGTGCAGCTAAGTGA
Protein sequence (LotjaGi1g1v0680000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLSADKYPQISYDLIFEKEFELS HNWKHGSVFFTGFKAESQAVSDGDDEDSDDSDGEDIPISVSNGKPEIEVKNSAKPNANEAKQKEKITDLKKNENNKGKAA IAEDEEDSSGSDTDNTSEDEPMPNGGVDSSEDDDDSDDDDDEDDDEDEDDDDDDEETPKKAEGSKKRVLDSPKNTPVPVK KAKFVTPQKTDSKNVAHVATPYPKQAGKASASTKQPAKPQTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSAAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 101 | 101 | 2.9E-6 | – | |
| PANTHER | 1 | 197 | 197 | 1.3E-80 | – | |
| PANTHER | 1 | 197 | 197 | 1.3E-80 | – | |
| Pfam | 3 | 93 | 91 | 3.7E-12 | ||
| MobiDBLite | 99 | 315 | 217 | - | – | |
| MobiDBLite | 137 | 165 | 29 | - | – | |
| MobiDBLite | 185 | 217 | 33 | - | – | |
| PANTHER | 188 | 313 | 126 | 1.3E-80 | – | |
| PANTHER | 188 | 313 | 126 | 1.3E-80 | – | |
| MobiDBLite | 266 | 282 | 17 | - | – | |
| Pfam | 288 | 312 | 25 | 6.6E-6 | – | |
| ProSiteProfiles | 288 | 315 | 28 | 11.884 | ||
| ProSitePatterns | 290 | 311 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0680000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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