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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0683400 |
| Transcript ID | LotjaGi1g1v0683400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein-sorting-associated protein 37 like 2; TAIR: AT2G36680.1 Modifier of rudimentary (Mod(r)) protein; Swiss-Prot: sp|Q3EBL9|VP372_ARATH Vacuolar protein-sorting-associated protein 37 homolog 2; TrEMBL-Plants: tr|I3T1W6|I3T1W6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0683400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125047539..125052348) extracted from Lotus japonicus Gifu genome v1.2.
ATTATAGGAAGCAACGATCGTCCTCGCTTTCCTTCAAGCACCGTCTCTAAACTCTCGAGGGTTCACGTTGCTTCTTCTTC TTCGGTTGGTGAAACCAGTAAGCAATGTTCAGATTCTGGTAATTCTCCGTTCCGCATCGAAATCCTCAATCATCTCCTTC ACCTCTTTCGATTTCTTGCGTTTTTTTTACAGTAATTATCGTCATCGAATTTGAATTTAGGGAACAATTTTGATGTTGAC GTTGATCTTGTTTGTTTGCAGGGGATCGCAAGAGCAGCAGCAGCAGCAACAACAACAACCGCAGGATGGTTCTTCTTCAC AGTCGTGGTATCCGCCGTCCGTGACGAGCTCGCCGAGGCCAGCCACGCCGACTTCCTCTTCGTCTTCATCTCAACAGAGG CCTTCTTCGCATGTTCCTCCTGCTGAAGCCGCTGGGATTATTTCTGCTTTGAAGGACAAGAGGTAAAGCTCTCTCGATTT TGATTGCATATGAGTGGTTTCACTGTGTATTGGGTAAATGGGGGTATAAAGTGTTTGTTGATTTATCTGATCCAATATTT CAAAGCTAGTTGTTTTACCTCGAGAGTGGTTTCGATACGAACCTTTCAAATTATGGCATCTTATTGAGAGTATTAATAGT AGTAGTACCTATTGTTAATTATGATAGAAAGTTAGAAACCTGATGTGTTTTTAATTTATAATGGTTGAATGGCAGAGCTA TTTGACATCTGCCACTGAGTTTGATTACATCCTAACACAATCGGATGGTAGTTCAGTGCGATCGGACCAACTAAGCTCCA TATGGTCATTGATAAAGGCAATCCAACCAAATGGAAACAATAGGCATAGAAAGGAAAATTTGATCACTTCATTTAGAATG AGCACAGCCACAGAAATATGCTTTTAATATTAATAGAGATGACTTGCCTGGATGGTTGATAAAATGCTTATTAATATATT GTAAATTGGGATAAGATGCTTAATCTATGTGAAATTTCTTTCTTGTTAGTTCTAGTCTATCCCTTGTCTCACGGTATGTA TTAATAGTTACACGAACGTAGATATCTATACTTTATGTGCTTATGAGAGTACTTTAGTCCTTTCCTTTAGTGCTTGTAGA GTCAATTTCAAACTGAAAGTTCTGTTTGTAGTATCTATTATGCTTACTGATTCATCAAGCAATGGTTTTTGTTATCTACT ATGAATGAAAATACATATTGAGATATGAGTGAGAATACAGTTTTTATTTTATCTTTGTGACCTTTTTAACAAAGAAAATT GAAACTTGAGGTTCCTATCTTGATTTGGTGAGATAAGATCATATAAGCAGACTGAAAACAAAGAATGAAGGGGTTTGCAA CTTTTGTTTTTAGATTCAAGGTCAACTAGGAAAATTTAGAGTTTTTGTATTTTACTCAACGGATTGCAAACAGTGTTTGA TGAGGGGTGCTGAGTGTAGTTTAAGAATATCATAGGGGAGGTGAGTGCAATTTTCCCATCCTTTTATGTATGCTGATATA ATTTTTTTTTTCTCTTACTATGAATTTCCCAGTGTTGATGAGTTACGGAAGCTTTTATCTGACAAAGATGCATATCAACA GTTTTTAAATTCGCTTGATCAGGTCAAGATTCAAAATAATGTAAGTTTCTCGACTTTACTATCTATTTTATTGTGGTTTA TTTCATTTGAAAATTGAAAGTATTTTCATTATACTGCTTAGGTCTGGTATGGCTAATAGGAGCTTGGCCATCACAGTCAC ACTGTGCTCCTGCCAAGGGAAATTTACCTATCTAGATAAGAAGCATTGCAATCTCATTAGCTACTCCCTCCATTCTAAAA CTTTTGACCTTTTAGATTTTTCTTTTTGTTTCAAAACTTTTGATGTTTTAGAAATAAGACTTGGTTAATTTTTTTACCAG GGATACCCTCATTTAATAATTATATTGATAAATATTTCAGAATTACCTGAACTAACTACAGTTATACATCTTAGTTATCG CCTCATCTTTTCTGCTACATCTTTCTCTTTTATGGGAAGTTGGAGAAGAATAAATGAAATAAGTGGAGAATGAATGGGGA CATTTTAGTCAATACTCCCTCCGGTCCTATTTATAAGCAACAAAAATAAAATTCACATAGTTTAAGAAATGTAGTTAAAC TAGATAAAATGCATTAAATTTGTCTTAAATTAAAATGAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGAA AAGAGAGAGAATAATTAATGAGACATATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAG CTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGT ATATAATAATATTATACATCAATTAAAATTTTCTTAATGTACATGATTAACCTTAAATGCCAAAACTTTTGAAATGAACA AAATAATTTTGTAAAATAACCCTCAATGAGTTTAACTCTTCTGCAGACCTGCTCTTATAGTGGGTGCTTTTAGGCACTAG GTTGCCCTTATTAAATTAATTTCATTGCACTGCTTCTGCAGTGAATACTTCTAAGATTCTTCAACACTATATACTTTGCT GGTTTGGTGCATTATTCTCCCATAATCTTATTGGTCTTTGAGTGTTTGAGTATGTTGGAGATTATGGAAAAAGAGGGATA TTTCTGTGCACGCGAGTCATGTGTGTTTATGAACATATCCATGATTTCTGTGCGCGCGAGTCATGTGTGTTTATGAACAT ATACATGAAAATCCTCCAAGTTGGCTGTATACTTCTTGAGGTGTTCTGCAATCTAGAGATGGAATTGTTGAATGTTACAA ACACTTACCAATTGTCTGGAGTTTATATGTAGAAAGCAACATATTCTGTCGTGTACGTAGACTGTGCATATTACTATGTT AGGGTTCTAAATTAGAGTCAGTGAGCCTGTTGTGTTTGGGCCTGAGTTTGGTGTATCTGTTTGCTTTTGTTATTTGCTTT GGTATTAAGTTAGCTTTTATTATTTGAGTTGGGCCTATTTTGGGCCAGTGTCATTTACTAAGTAAGGTTAGTAGGGTTAG TTTATTATAAATAAGAGTACTCACCTTGGAAGGGTTTCACCCTTGGAATGAAGGTTCTCCTTCTTGTGAACCCAACAGCC AACAAGATAAAGGAAGAGCAATAGGAAGTATTTTTGGTATTTTTGAGTATATAAACTGTAAAATAAAATAAGAAGAGAGA AGAGATAAAGAGAGAGATATGAAAACAATCCTAATGGATTCACAAGAAGGAGAACCTTCTTTCCAATGGTGAAACACTTC CCAGGGAAAATTCCTTTACAAACTCTATACAAAACTTGGGTCCTAAGAAATAGTTGCCATGCTGTAAGTCAGTGGCAGCA TTCTACAATGACGACCTGACAACCAATACATGTGTGGAAACAATTGGAATGATATTTAATTCACCACTCAGCCTGTTACA GCTAAGTGACTGTGCTCAACTGCACAGGCTACCTGAGTATACTGGACAAAGTTTATTTGCTGTGCTATTTCTCTATTCAG ACATTTTTTGCTGTTGTTTTTGGTTTTGTTGGCTGTTGCTGATGCTGGATTTTGTATTTGCTTGTATTTTAACTATCCTT TGGCCTATTGATATGATCAGCTGAAAGATGAACTTTGCAAGGAGAATTTGCAGCTTGCAGGTGAGTGACTAATTTGTTTT ATGTGCTGTGCTGGTATTACATGGTTGGCCATCAGTTTGTATTGTAGAGCTTCTCAAACTTTTGTCTTTTATACAGAGGA AAATCTACAAAAGGAACCTCGTATCATGGAACTTAGGAACCAAGTAAGATCGCAACTTGTTTTTATGGTTTTTTTTTTTT CCTTTTTGAAATTATTGAGCTGATTGTGGGATTTTTCTTCTTTTCTGGTAACAGTGTAGAATAATTCGGACAACCGAATT AGCCACTGCTAATGAGAAACTAAATGAGCTTGAGAAGCAGAAGGAAGAAATGATGAAGTTGAACTCCCCTGCATCTCTCC TCCAAAGGATTCAAGGTATGGCTTGATCTGAAAAATTCTGCAATAGTTCTGGTGATCACAATTTTATCCCTACTGTGACC AATGCTAGTCATAAATTTGACAAATTTATGTGATAATTTTGCAGAGTCTATAAATAAGACAGATGAGGAATCGGAAAATC TGCACCAGAATCTCCTTGACGGAGAGATTGACCTCGGAGCCTTTTTGCAGAAATACAAGAAGCTACGTACCACTTATCAC AGGAAAACGCTCATACATCTGGCTGCTAAAACATCAACTATATGAGCACAACCCTTTGAAATATGGAAATTAAAGAAGTA ACTCCTTGATTTGGCTCGAATGCATTTGATTTTTGGTTCATTCTTGTCAATAGTTGGCACTGGTCAAAGTTACTCTTGTT ACCAATTATGTAAGATGTCGTTTGGATTGAGCTATGAGCTATCTATGATCAAGTGAGAAACATTTATTTGTACAGCTTTA GAATTGAGATTGTTCACCAAACTTTGGTGACTTGTATTCATAATACATCTATTTTCGTTTGGGTATTCCGTATTCATAAA ATGAGATTGTTCACTTGGTGACTTGTATTCATAAATACGTCCCTTTTCATTGACTTGTATTCATAAATAATTGTCACCAT TTATATGCACCTTTTTTTGGGTGGTTTGTATGTACTTTGGTCTGAAGTATATGGTTTGACCTATGAGATCGTAATTGCCA TCATAGAATT
CDS sequence (LotjaGi1g1v0683400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAGATTCTGGGGATCGCAAGAGCAGCAGCAGCAGCAACAACAACAACCGCAGGATGGTTCTTCTTCACAGTCGTG GTATCCGCCGTCCGTGACGAGCTCGCCGAGGCCAGCCACGCCGACTTCCTCTTCGTCTTCATCTCAACAGAGGCCTTCTT CGCATGTTCCTCCTGCTGAAGCCGCTGGGATTATTTCTGCTTTGAAGGACAAGAGTGTTGATGAGTTACGGAAGCTTTTA TCTGACAAAGATGCATATCAACAGTTTTTAAATTCGCTTGATCAGGTCAAGATTCAAAATAATCTGAAAGATGAACTTTG CAAGGAGAATTTGCAGCTTGCAGAGGAAAATCTACAAAAGGAACCTCGTATCATGGAACTTAGGAACCAATGTAGAATAA TTCGGACAACCGAATTAGCCACTGCTAATGAGAAACTAAATGAGCTTGAGAAGCAGAAGGAAGAAATGATGAAGTTGAAC TCCCCTGCATCTCTCCTCCAAAGGATTCAAGAGTCTATAAATAAGACAGATGAGGAATCGGAAAATCTGCACCAGAATCT CCTTGACGGAGAGATTGACCTCGGAGCCTTTTTGCAGAAATACAAGAAGCTACGTACCACTTATCACAGGAAAACGCTCA TACATCTGGCTGCTAAAACATCAACTATATGA
Protein sequence (LotjaGi1g1v0683400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRFWGSQEQQQQQQQQPQDGSSSQSWYPPSVTSSPRPATPTSSSSSSQQRPSSHVPPAEAAGIISALKDKSVDELRKLL SDKDAYQQFLNSLDQVKIQNNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELATANEKLNELEKQKEEMMKLN SPASLLQRIQESINKTDEESENLHQNLLDGEIDLGAFLQKYKKLRTTYHRKTLIHLAAKTSTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 55 | 55 | - | – | |
| MobiDBLite | 1 | 58 | 58 | - | – | |
| PANTHER | 4 | 222 | 219 | 2.4E-91 | ||
| PANTHER | 4 | 222 | 219 | 2.4E-91 | – | |
| Pfam | 69 | 211 | 143 | 3.6E-34 | ||
| Coils | 139 | 159 | 21 | - | – | |
| ProSiteProfiles | 143 | 223 | 81 | 17.47 | ||
| Gene3D | 147 | 215 | 69 | 2.6E-6 | ||
| SUPERFAMILY | 161 | 211 | 51 | 6.21E-9 | ||
| Coils | 166 | 186 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | ESCRT I complex | An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes. | ||
| Biological process | Endosome transport via multivesicular body sorting pathway | The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. |
Expression pattern of LotjaGi1g1v0683400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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