Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR029012 is a Helix hairpin bin domain superfamily.
<p>This domain superfamily is found in uncharacterised protein whose genomic location within nitrogen fixation clusters suggests that they may play a role in this process. They consist of two α-helices. A four-residue linker between the helices allows them to form an anti-parallel bundle and cross over each other towards their termini [[cite:PUB00052824]]. A similar domain is found in Sulfolobus spindle-shaped virus 1 (SSV1) protein D-63 [[cite:PUB00031100]]. This domain is also present in eukaryotic proteins such as Golgi to ER traffic protein 1 (GET1), also known as tail-anchored protein insertion receptor WRB, Pre-mRNA-splicing factor ISY1 and Vacuolar protein sorting-associated protein 37.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800 | 17 | ||
| – | U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800 | 17 | ||
| – | U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800 | 17 | ||
| – | Vacuolar protein-sorting-associated protein 37 like 2; TAIR: AT2G36680.1 Modifier of rudimentary (Mod(r)) protein; Swiss-Prot: sp|Q3EBL9|VP372_ARATH Vacuolar protein-sorting-associated protein 37 homolog 2; TrEMBL-Plants: tr|I3T1W6|I3T1W6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0683400 | 12 | ||
| – | Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC | 13 | ||
| – | Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC | 13 | ||
| – | Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC | 13 | ||
| – | Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC | 13 | ||
| – | Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC | 13 | ||
| – | Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC | 13 | ||
| – | Pre-mRNA-splicing factor ISY1; TAIR: AT3G18790.1 pre-mRNA-splicing factor ISY1-like protein; Swiss-Prot: sp|Q69ZQ2|ISY1_MOUSE Pre-mRNA-splicing factor ISY1 homolog; TrEMBL-Plants: tr|G7K4N4|G7K4N4_MEDTR Pre-mRNA-splicing factor ISY1; Found in the gene: LotjaGi3g1v0043900 | 8 | ||
| – | Nucleolar protein; TAIR: AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2; TrEMBL-Plants: tr|Q70I27|Q70I27_LOTJA SAR DNA-binding protein-like protein; Found in the gene: LotjaGi3g1v0511600 | 18 | ||
| – | Nucleolar protein; TAIR: AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2; TrEMBL-Plants: tr|Q70I27|Q70I27_LOTJA SAR DNA-binding protein-like protein; Found in the gene: LotjaGi3g1v0511600 | 18 | ||
| – | Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I3S8I2|I3S8I2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0223200 | 17 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 7.14 |