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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0684000 |
| Transcript ID | LotjaGi1g1v0684000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT2G36710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15; TrEMBL-Plants: tr|I1NAE9|I1NAE9_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0684000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125095411..125103045) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTACCGCCCCATTCATGAATGTCCTCCCATGAGCCTTCATTTAGTTATAGTATATCCTGACCTTTTCTGCAAGTGAC TTAGCGTGTGTATTATCCAATCTCTGTTTAACCATCAAATTCATTTTTAAGAGCTCCATAATGCTTTCAAAAGCAGGCTT TTGCAATGATAGATGCCCATACATTTCTTACCTTACCTCCTACTCCATTAATACATCACTAGCACATTCTTTTCACATGC ACATAAATATAACCATACCCCACTCCCCCCTTCATTCAAATCCCATTTCTTAACCCAAAGTCACAGATAAACTAACCAAT TGAAAAAAGCTAAAACATGGGATTCAAGAGAACCCTCTTTTGGCTTTCTAGCTTTGTCATTCTTTTCTTTTCTATCATAA TTGTTCATCATACCCAGATACCTGCCATTAGTCCTCATCAAGATAGTTCTAGTTTTCAGCTTGGAATAATATTTAGCAAG ATTACTAAGCTTAGTGGTTCTCAAGATTTTGTTTCTTTGATAACAAGTATTGCAAGGAAACATCATCACTGGAAGAGGCA TGAGGACAAATGTGACCAGGTCAAATTGGCTTATAATGTGACTCATGTTTTCACAGTTGACTTAAAGGGGCGTGGTAACT TCAGTAGTGTGCAGAAAGCAATTGATGCTGTTCCTGAATCTAGTTCTGATACCACCCTTATCTTAATCGACTCTGGCACA TACAGGTGGTTGTCTCTTTGTGCTTTTATTGATTCTTAAAGTTTAATAAGTGTGTTTGGACTTTGGATAAGCATTTGATT GAATGAAATTGATTTTCATAAAATTAGTCTAATTAAATATGATTTGGAGTAAATTAATTTATGTTTGAACTTTGTTAGTT AAACACAAAAGCTAGAAAAAGTTGCTTTTTTTTTTTTACCAAAATCACGTTTCAATCAGAAACCATGTTTGAAAAATTTG GTGCATGTGTTTCCCAACATCTTATTTGGATCAGCTTATTTTTCTCATAATCAATTATGTTATCCAGAAATTACTAACAA AAGCTTCTTATAATTGATTTTGACTTTAGAATAAATTGTAGAAGAATTTTCAAACATGCATTAAGTCCAGCCTTTCTATT TTAAATTCTTAATGCTTAGTTCTTAGGTAAACACAACTAACAGAAAATACTTAAAAGTTCCTAAGCTTCATGTTTTCAAT CGAAGTTAGAGAACATAATCAGATATATTCAGCTATATATAAAATTATATACACTATTTTACTTCAAATATTTGATAAAT AATCACAAATCACAGGGAGAAGGTAGTGGTGCAAGCCAATAAAACAAACTTGATAATTAAAGGTCAAGGGTATCTCAATA CAATCATAGAATGGAATGACACTGCCAATTCCACTGGTGGGACATCCTATAGCTACTCTTTTGCTGTCTTTGCTTCTAAG TTCACTGCTTACAACATCAGCTTTAAGGTAATTAAGTAGTTTAAGTTTGCACTTGCTTTGTTCAATGTCCTGTTTTGGAA ATTTACATGTACATTATTTTATGGTGAGATTTTTGTGTTGTGGGTTGTGTGTAAAGAACACAGCTCCTCCACCATCACCA GGAAAGATTGGGGAACAGGCAGTGGCACTGAGAATTACAGGTGATCAGGGTGCATTCTATGGATGTGGGTTTTATGGTGC ACAGGACACACTCAATGATGACAGTGGAAGACATTATTTTAAAGAATGTTTCATCGAAGGATCCATTGATTTCATATTTG GAAATGCAAGGTCACTTTATGAGGTAAAAAAATTACACAAAACTTGCTTCCTTTGAATCATATTTTGATATTAGAATTTG GATTGGACCTAACTCTAATTAAAAGCTAGCTTAACCTTCTCTTCATAAATAATTCAATAGTGAGTTATGATATGTGGACA TACGTTTTTTATTAGACATCCTTCCAACACACAATTTAGCGGAGGTTTTTAACCATCGTAAACGTTAGCAACAATTAAAA ACTGGCGCTAAAGTGTGTGTCGTCTAAAATGTGTATGTGTATGTGAGATGTTGATAAAATGTGTATATTAGCTCATCATT TCTGTCAATAGCATATCTCCGGCCTATGTGTGAATTAATACTTGTCTATTGCAGTCCATTACCTTATACACAAGTTTTTC AATACACTCTACAAGAAGCTGCATTATGGCTGTCCCTGAATTTTATTGGTCCCATCCATCATAGGCAACATGTTACATGA CAAGTTGTAGGAGTTTGTGTTCAAGAGAGTTTGCGTAATTGAATGTCATTACTCATTTGACGAAGTGGTAGTAATGCCAT TCTTTTTTTTGTTGTTGTCAATATGTCATTCTTCCATGTCTGAAAAGTTTTGCTTGTAATCTCTTTATAGCAGTACCTTT AAAATGTAATTGTTCATTAGGAAAAATATGGGCTATCTGTGCCAGCCTGCCAGGTAAGAAAGTTGGCACCAATTAGTATG ATAGCAAAGAAATTTGATTGAACCAATTCATTTTGGGACATGGGAAAAAGGGAAAGTTACGACCAATAAGTATGATACAA GGAAATTTGATTGAGCCAAGTAATTTTGGGACATGGGAAAAAGGGGTTGTTTGGTAGCAAGTGATTAGATTGAACTAAGT AATTAGATTGAAGTTGAACCAAGTGATTTTGGGGCATGGGAAAAAGTAGTATGATGATGGTGGGGTGATTTTAAGCTTTG GATGCTAATCAACATTTGAATAGAAGTACCATTATATTCATTTGAACCTATAGAAAATGCTTGTGGCTGAAACAGCTTCA TTAGAAAGATTCATTTCGTTCAGATTTCAATAAAATTCTTTTCTAAAGGGTTAGTGTTCAAATATTTGATTATAAAAAGA AAAGTTAATTTAGAATAATTAGTTTTGTTCAAATTGAACAAAACAAAGTTGATTTTAAACACCTTATTAGCAAACTACCT TATTATTTGTGACACCAGGATTGTTATATGTGACACCAGGGCTGTACCATACACTCAATAGCAAAACCAGATTTGGATGG GGTTAGTGGCTCAATTACAGCACAAGGGAGGCAATCAATAAACGAGGAAACAGGGTTTTCATTTGTGAATTGTACCATTC TTGGGACTGGGAATGTGTGGCTTGGAAGAGCTTGGGGTGCTTTCTCCACTGCTGTCTTCTCAAAAACATACATGTCTGAG GTTGTAGCTCCTGAGGGATGGAATGATTGGAGAGATCCCTCCAGAGACCAGTTTGTAACTTCTTCCATTAACTTATCCCT CCCCCATTTGGATACATGTTTGGAAGTATGAACGAGAAAATAATATATCCTGAAGTACTTTTTGTTGAAGTAACAACTTA TTACTTTAACAAAAAGTGATTTGGTTATTTTCTCGTTTTCATACTTTTCAGCGGGTATCCAAACGAGCTATTTGTCTCAA AAACGTACATGTTTGATTGATTATATTTGCAGGACTGTCTTCTTTGGAGAGTACCGTTGTCTAGGACCTGGGGCAAATTA CACATCCAGAGTTTCCTATGCAAAGCAACTGAAGGATTATGAAGCAAACTCCTATATGAATATTTCATACATAAATGGAA ATGATTGGCTTCTCAATTATTTTGAAAACCATGTTGGTCATTATGATGTATAGTGGGAATCAGTAAAACCTCAACTTCCA AATGTATGTGTGTATTCACACAAGATGTAGAATTAAGTCCTTAAGTCATTCAGCTGCTTCCATAAAAGTTCAAACCAAAA GAAAATCAGGTTGTATAAGGCTGAAGGATGAGTTTACTTATAGCTGAGAATACTTGTAAGCTAAAACAATGTTCTCTCAC TGAGAAGCACAAGCTGTAACAAACCCAATAATTTACTTGATGTATAACTCATATTTAGTATATAAATGTTTCATTATACC TTGAACTCAGCATGAAATGTTGAAGTGGGATGAACCATCCTCCTGCATTCTTGTTATCTTTCCAAGATCAGTTGCTCTTT TCATTCTCTAAGATGACATACATGAGGATGAATAGAGCAACAAAGCTTGGAAATTTTCTCCTCAAAACTTCTATTACCAT CCTGAAAAGTTGAGCTCTGAAATTTTTTCTCCTGCAGTTTTGACTACCCAAAGAAACTTTCTTAGTTGGACTGTTGCATG ATATCTTGGATTAGTAGTGTCACATTTGAGTGAGAAGATCCTCCTTCTTCTACAGCTCTCTTGGCCATCTCAGCAAGTTT CTTAGCCCTTTCCCTTCTCTCTTCACTTCCATTTGCCTCATCCATTAACTTCTGTATAGCATTCTGAACATCTTCTTTCT TCACCAACACCCCAGCTTTCTCTTCATCACCCCAGTTCACAGGACTCTCCACTCCAACACTCACCCCAACTCTCAATATT TCCACAATGAACTTCTCATTGAAGAATTGGTCTCCAAATAATGGCCAAGTAAGCATTGGCACACCAGCACATACAGCTTC CAAGGTTGAGTTCCAACCACAGTGTGTTAAGAACCCTCCAATTGCAGGGTGTGATAGTATCAATACCTGAGGAGCCCAAC CCTTGATCAAAAGTCCTCTCCCTTTAGTCCTTTCCTCAAATCCAGATTCCTCAATCCAACTTTTCAACTCTTCTGTTTGA TTTCTTTCCCTTATAACCCAAATGAATGGCCTATTAGATTCCTCTAAGGCCATACCAATCTCAATAAACTGCAAAGGACT TAAATTGCAAATGCTTCCTAGGCACACATAGATAACCCCACTTGGATTTTGCAAATCAAGCCATTTCATGCAACTTTCCA TATCAACTGAAGCCTTGTTCCCTCTCTGAGCCTTATCCAGGTGATTCCTGTTGCTGAGTGACACAGGGCCAACACACCAG AGTTTATCATTCTTAACCTTCTTGAAATCCCTTGCATAGTCTGGCTCCAACTCCTCAAAAGAATTCACCACCACCCCATA AGAAACCATTTCAGCTGCAGCCATTTTGTCAACAAACTCCTTCCAGTTTCCATTACTTGAACTTGGCATCTGAGCTCTAG TGATCTCAATTTTGTCAGGAATTCCGGGTATGGCGAAGTATTCCGAATCTGTGGCTGTGTTTTCCAGAACCTGAGAGGTT AACAAATTCATCTGCCAGAGAAGACAGAAGCAACTCACTCCATAGAAGGAAATCCTGGGAATATTGAACTTGGTGGCTAT TTCAGCAGTATATGGGAAACTAACATCAGATATTATGCAGTTTGGATTTGGTGTTAACTCTTCAAACACTTTTTCAGCTG GTTCCTGCAGAATTGTGTTTGCTGCTTTGAAAAAATCATATCCCATGCTCATGGATGGAAGCATGTCAAAATTCTCACAC CCTTCTGGGAATCCAGCATCTTTAGATGGGAATTGGAGCTGGACTAATCTGAGTTGAAGGCCGGATTCGGAAGCGCGAGT GAAGGTTTCTGAGAAACGAGCAGCGTTGTGTGGGGTTGTGATAACGGTGACAATTATGTTCTGGTGTGCTAATATTGTTG CAAGGTCTATCATGGGGAGCATGTGGCCTGGGGACATGAGGGGAAAGAGGACAAAGTGAAGCTTAGGTGCTTGGGAAGCC ATTTATGCTTGATTTGGAGGAGGGGATGAACACTTGTGACTTGGTTAATGCACTTGTTTATCTGTATTCTGCAGGAAACT TCTCTTAAAAGCACCACAAGAGTTGCTTCTATGATATCAGTGACTACCTATTCAATGATAATGATATCCAAGCTTGCAGG CTTGTAATTGGTGGAACACTTGAAGTGTTGAAGTCAAACTTGTACACTTCTTTTGGTTCTATTTACTATCATGGGTTCTA ATTCATTCAGAACCAAACTAAAATTTAACAATTAAGAAAGATAATATTAGTTTCAAAGTGAAACTGAAACATTGCTTTAT TGAGTTGTTATATTTTTATTAGAAGAAGAAACATATAAAATACACATTTAACTAATGTGCCATCATTTTTTGCTTATGCT TAATCATTAACTATGAACTTGCCCCACAATATGTTGGATAAATGATTTGCAATTTGAAGAGGAAGATCCACCATCTTCAA GTGCCTTATGAGCCATTTCTTTTAGTTTCTTGGCTCTGTTCCTTCTCTGTTCCCCTTCCCCACCCTGCTCCATGAGCTGC TCAATAGCCTTCTTCACATCCTCCTTCTTCACAATGGTATCCCCACCACCTTCAACCCCAATCCTCACACCAGTCTTCAG AACTTGCACAATGAGCTTCTCATTGAAGAACTGTTCAGCAACCATTGGCCAAGTTATCATTGGCACACCTGCAGAAACTG CTTCCAGTGTGGAATTCCAACCACAGTGTGACAAGAATCCTCCAGTTGCAGGGTGGAACAGTATCTCAACTTGTGGTGCC CATCCTCTCACTATGACACCCCTTCCCTTGTTCCTCTCTGTAAAATTCTCCCCTACTAACCATTTTTCTAGCTCAGCAGA ACAATCATTTTTTCCAATTACCCAAATGAATGGATGGTTTGATGCTTCCAATCCCAAAGCTAGCTCCTTTAGCTGTGAAG CTTGAAAGTGAGACATGCTGCCAAAACAGACATAGATAACAGAACAAGGCTTGTTAGAAAGAAGAAATTTTACACATTCT GACTCATCCATGGATGGTTTATCATCCCTCCCAAGCTTCTCCAACATTAATTTTTCATATAAAGAAAGTGGTCCGACACA CCAAACATTTCTTGCCACTTTCTCATACCCCCTAACATACATCATCTCCAACTCCTCAAAAGTGTTCACCAATATCCCTT GTGAGGAAAGTTCAGCCTTTTTGAATTGTTCAATAGCTTCTTTCAAAGACTCAGAGTCCTTCATCATTGCTTCAGGTAAC TGTGCCTTTGTGAATTCAATTCTCTCAGGCAAGTCTGGCACCACAAATGGCTGAGACATTGAGGTGACCCTCTCATGAAC CTTGGAAGTGCTAATGTTATGTGAGCACAAAAGGGTGAAACAAGAGATTCCATGGAAGATTACCCTTGGTATGTTGAACT TTGTTGCAGTACTTGAAGTCCAAGGAAGGCAAATATCTGAAATGATGCAGGTTGGTACTGTTTCCAGCTCTGAAAGCCAT TTCTCAAGTGGCTGTTTAAGCATGTTGCAAGCTGCAAAGAACAAGGGTTGGTGTTGAGGGGAAGTGACAGAGTCCATGTT TTCACACCCTTCTGGTAACCCTGCTTCTTTGCAGGGGAAGGGTAGCACCTTAAAGTGGATTTTGAGGTTGGAAGCTTTTG CTTGGTCAATGACCATGTTGAACCTGGTTGCATTGAGGGGTGTGAGGACAATGGTGACAGTGATACCATTGGCTGCAAGT AACTTGGCTAACTGTGTAAAAGGAATAAGATGGCTTTGGGACATGAAGGGTACAAGAAGGAAGTGTTGCTGGTAAGTTTG GGAAGCCATGGCATGAATCATGATGTTGGTGAGTTGCATCAATATATAAAGTGGAGATTAAGCTATATAGAAGAGCATGA GCACAATGAGCACAATTTGTGGCAATTTTTTTATTTATTCATTCGACGTTTAGTTCACTATTTTTTTAATTTTATTTTTA ATCATATCACATATCATATCTTTTACTTTTTTTTT
CDS sequence (LotjaGi1g1v0684000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTCAAGAGAACCCTCTTTTGGCTTTCTAGCTTTGTCATTCTTTTCTTTTCTATCATAATTGTTCATCATACCCA GATACCTGCCATTAGTCCTCATCAAGATAGTTCTAGTTTTCAGCTTGGAATAATATTTAGCAAGATTACTAAGCTTAGTG GTTCTCAAGATTTTGTTTCTTTGATAACAAGTATTGCAAGGAAACATCATCACTGGAAGAGGCATGAGGACAAATGTGAC CAGGTCAAATTGGCTTATAATGTGACTCATGTTTTCACAGTTGACTTAAAGGGGCGTGGTAACTTCAGTAGTGTGCAGAA AGCAATTGATGCTGTTCCTGAATCTAGTTCTGATACCACCCTTATCTTAATCGACTCTGGCACATACAGGGAGAAGGTAG TGGTGCAAGCCAATAAAACAAACTTGATAATTAAAGGTCAAGGGTATCTCAATACAATCATAGAATGGAATGACACTGCC AATTCCACTGGTGGGACATCCTATAGCTACTCTTTTGCTGTCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAA GAACACAGCTCCTCCACCATCACCAGGAAAGATTGGGGAACAGGCAGTGGCACTGAGAATTACAGGTGATCAGGGTGCAT TCTATGGATGTGGGTTTTATGGTGCACAGGACACACTCAATGATGACAGTGGAAGACATTATTTTAAAGAATGTTTCATC GAAGGATCCATTGATTTCATATTTGGAAATGCAAGGTCACTTTATGAGGGCTGTACCATACACTCAATAGCAAAACCAGA TTTGGATGGGGTTAGTGGCTCAATTACAGCACAAGGGAGGCAATCAATAAACGAGGAAACAGGGTTTTCATTTGTGAATT GTACCATTCTTGGGACTGGGAATGTGTGGCTTGGAAGAGCTTGGGGTGCTTTCTCCACTGCTGTCTTCTCAAAAACATAC ATGTCTGAGGTTGTAGCTCCTGAGGGATGGAATGATTGGAGAGATCCCTCCAGAGACCAGACTGTCTTCTTTGGAGAGTA CCGTTGTCTAGGACCTGGGGCAAATTACACATCCAGAGTTTCCTATGCAAAGCAACTGAAGGATTATGAAGCAAACTCCT ATATGAATATTTCATACATAAATGGAAATGATTGGCTTCTCAATTATTTTGAAAACCATGTTGGTCATTATGATGTATAG
Protein sequence (LotjaGi1g1v0684000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFKRTLFWLSSFVILFFSIIIVHHTQIPAISPHQDSSSFQLGIIFSKITKLSGSQDFVSLITSIARKHHHWKRHEDKCD QVKLAYNVTHVFTVDLKGRGNFSSVQKAIDAVPESSSDTTLILIDSGTYREKVVVQANKTNLIIKGQGYLNTIIEWNDTA NSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGKIGEQAVALRITGDQGAFYGCGFYGAQDTLNDDSGRHYFKECFI EGSIDFIFGNARSLYEGCTIHSIAKPDLDGVSGSITAQGRQSINEETGFSFVNCTILGTGNVWLGRAWGAFSTAVFSKTY MSEVVAPEGWNDWRDPSRDQTVFFGEYRCLGPGANYTSRVSYAKQLKDYEANSYMNISYINGNDWLLNYFENHVGHYDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 7 | 25 | 19 | - | – | |
| PANTHER | 11 | 391 | 381 | 3.7E-184 | – | |
| PANTHER | 11 | 391 | 381 | 3.7E-184 | – | |
| Phobius | 26 | 399 | 374 | - | – | |
| SUPERFAMILY | 89 | 386 | 298 | 9.16E-89 | ||
| Gene3D | 89 | 395 | 307 | 3.0E-104 | ||
| Pfam | 93 | 383 | 291 | 2.3E-71 | ||
| ProSitePatterns | 240 | 249 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0684000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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