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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0685000 |
| Transcript ID | LotjaGi1g1v0685000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thaumatin-like protein; TAIR: AT1G20030.2 Pathogenesis-related thaumatin superfamily protein; Swiss-Prot: sp|P83332|TLP1_PRUPE Thaumatin-like protein 1; TrEMBL-Plants: tr|G7L3Y5|G7L3Y5_MEDTR Allergen Pru protein, putative; Found in the gene: LotjaGi1g1v0685000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125191101..125192984) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTAATTAAATAACCATGATGAATACACGAGCTGCTCTCTGCATTATTTTGGCCTACTTCCTCTGTGGTATGATCAAC AATCCTTTCAGTTTTCTTTCCTTAATACAATCTTATTTCTTTTAATCAATTTTCCCATTGGTTGCATAATTAACTTGAAT GTTAGCAACAACTAGCTTTGCTTTCTTCTTCAATCTTAATTTCCAAACACCCCAATATTGAGAATTTAAGTGTGAGCACG TGAGTCCACCATTGAAAGTAGAGGAAAATGTTCAGCAATTTATATATATCTATAAATGAGAGGACTCATACATTTAACAT AATGTGTCAAGGTTTTAAGTAAAAGATGCGGAGTTCAAGATTTACTCTTTAGCTCAAAAGGGAGATCAATTCTAGTATCA AAGTCAATGGTTGGCTTGACCAAAATAATGACTCTCAGAGTCTCAGCAATATGGTACTCCCTCCGTTCCTTAATATAAGA ACCAAGCAACCACTTCACACCCTTTAAGAAATTTATCTAATCTAGATAATTGCATTAAATTTGTTCTCAATTTATATCAA CTTTCCAAAGTTACCCTCCACCCATTATTCTTATTTTTTATGCATCATTAATGCTATGGCAAGTGGAAAGAGAGAGAAAC TCAATTAAATAAGGGCATTCTTGTCCAAAAATAATTAATTCTCCACAAACTTTAAGTTAGTTCTTATAAAAAGGATCAAG TGCATTTTCTATTTGGTTCTTATAAATAGGAACGGAGGGAGTAACTGGGTGGCTTAGGAGACACGCTTAGTTTATCATTT CACCAAACTCGCATCATATACGAAATCTATCATTTCCCTCATTTTTCTTTCCTTATCTATCATTTTGATTTGGGTGTATA GTGACCAAATTATGCGTGACAAAGACTTTCCTTTCTTCTCTATGTCAATTAATCTGTGTCACATATGCTTCATTTTGTAG GAGCTTATGGAGCCAAGCTTACTTTCAACAACAAATGTCCATACACAGTGTGGCCAGGCACCTCAGCCAGCGGCCAAAAC CAGCTATCAAAAACAGGCTTCGAGCTAGCATCTGGCGAATCCACCTCCCTCAATGTCCCTTCCCCATGGGAGGGACAGTT CTGGGCCCGAACCGGCTGCTCCAGCAGCTCCGACAAGTTCACTTGCACCACCGGGGACTGTGGCTCAGGCCAAGTCACGT GCCACGGTGCCCGCGCACTTCCACCCGCAACCACAGCAGAGCTAAGCGTGGCAGCTAACCGCGGAAACGACATATATGCA ATCACCAACGTGAACGGGTTCAATGTTCCTATGTCCATTGCTCCGCGAGGCGGAACCGGTGAATGCAAACTCTCCAGCTG TGCCGCGAATATCAACGAGGCATGCCCGGTGAAACTGCGAGTGAAAGGGAATGATGGGAAGGTGGTTGGTTGCAACAGTG CGTGTGTGGCTTTCAACGAGGCGAAGTATTGTTGCACTGGTGAGTTTGAGTCGCCGGAGTTATGCAAGCCATCAGAGTAC GCTTTGTTTTTCAAAAAGAAGTGTCCTCTGGCTTATAGCTACCCTAGCGATGATGAAAGCAGCACATTTTCATGCTCCAG AGCTGACTACACCATCACATTCTGCCCCTAAACTTATACACATAGAACTAGCTAGGACAATGCTTGGTTATACATGATCA GCAGAAAAAGAATAAGAAACCCCTTGGTTTTAATTGAAGAATAAACAAACAATCACCTTTTGGTGATTGCATGTATTCTG CAGTTTTCTTGAATGGTCATATACTTCAACGACGGTTTTTAATCGCTTCAGACGGATGGTTAAAAACTATGTATTTTATA TGTGATTGATTAGACCAATCAATTCAATTTCTTAGTTTTGGTGA
CDS sequence (LotjaGi1g1v0685000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATACACGAGCTGCTCTCTGCATTATTTTGGCCTACTTCCTCTGTGGAGCTTATGGAGCCAAGCTTACTTTCAA CAACAAATGTCCATACACAGTGTGGCCAGGCACCTCAGCCAGCGGCCAAAACCAGCTATCAAAAACAGGCTTCGAGCTAG CATCTGGCGAATCCACCTCCCTCAATGTCCCTTCCCCATGGGAGGGACAGTTCTGGGCCCGAACCGGCTGCTCCAGCAGC TCCGACAAGTTCACTTGCACCACCGGGGACTGTGGCTCAGGCCAAGTCACGTGCCACGGTGCCCGCGCACTTCCACCCGC AACCACAGCAGAGCTAAGCGTGGCAGCTAACCGCGGAAACGACATATATGCAATCACCAACGTGAACGGGTTCAATGTTC CTATGTCCATTGCTCCGCGAGGCGGAACCGGTGAATGCAAACTCTCCAGCTGTGCCGCGAATATCAACGAGGCATGCCCG GTGAAACTGCGAGTGAAAGGGAATGATGGGAAGGTGGTTGGTTGCAACAGTGCGTGTGTGGCTTTCAACGAGGCGAAGTA TTGTTGCACTGGTGAGTTTGAGTCGCCGGAGTTATGCAAGCCATCAGAGTACGCTTTGTTTTTCAAAAAGAAGTGTCCTC TGGCTTATAGCTACCCTAGCGATGATGAAAGCAGCACATTTTCATGCTCCAGAGCTGACTACACCATCACATTCTGCCCC TAA
Protein sequence (LotjaGi1g1v0685000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNTRAALCIILAYFLCGAYGAKLTFNNKCPYTVWPGTSASGQNQLSKTGFELASGESTSLNVPSPWEGQFWARTGCSSS SDKFTCTTGDCGSGQVTCHGARALPPATTAELSVAANRGNDIYAITNVNGFNVPMSIAPRGGTGECKLSSCAANINEACP VKLRVKGNDGKVVGCNSACVAFNEAKYCCTGEFESPELCKPSEYALFFKKKCPLAYSYPSDDESSTFSCSRADYTITFCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 240 | 240 | 7.5E-83 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 240 | 237 | 9.3E-100 | ||
| PANTHER | 4 | 240 | 237 | 9.3E-100 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| ProSiteProfiles | 21 | 240 | 220 | 42.645 | ||
| Phobius | 22 | 240 | 219 | - | – | |
| Gene3D | 22 | 240 | 219 | 1.1E-86 | ||
| SUPERFAMILY | 23 | 240 | 218 | 1.83E-69 | ||
| PRINTS | 23 | 35 | 13 | 2.9E-13 | ||
| CDD | 23 | 239 | 217 | 2.47087E-98 | – | |
| SMART | 24 | 240 | 217 | 8.4E-104 | ||
| Pfam | 28 | 240 | 213 | 1.5E-73 | ||
| PRINTS | 49 | 58 | 10 | 2.9E-13 | ||
| PRINTS | 70 | 81 | 12 | 2.9E-13 | ||
| PRINTS | 121 | 137 | 17 | 2.9E-13 | ||
| PRINTS | 230 | 239 | 10 | 2.9E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0685000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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