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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0685200 |
| Transcript ID | LotjaGi1g1v0685200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thaumatin-like protein; TAIR: AT4G38660.1 Pathogenesis-related thaumatin superfamily protein; Swiss-Prot: sp|P83332|TLP1_PRUPE Thaumatin-like protein 1; TrEMBL-Plants: tr|I3SS29|I3SS29_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0685200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125207792..125209261) extracted from Lotus japonicus Gifu genome v1.2.
ATATCACACACAGAACAAGTTAATACACCTCTCAGTATCAAAGAGAAATTAAACAACCATGATGAATGCACGAGTTGCTC TCTGCCTTATTTTTGCCTGCTTCCTCTGTGGTATATATGCTCAACAATCTTCCCGTTTGCTCATTTCTCTAGATAGAATC TCGCTCTCATTAAATTTCCTCTAATTTTCCTAAATATTTTTGAATATATGTGGTTTGATTTATAGTTTTCATTTTCTTCT TTTCATTTGATTACTGACACTAGTTACACCAACTTTTATATATACCGAAAAATGTCACATAACAGTGGTATATATATATG AGTTGTACTTGTATCTCGGTTGAATAATTACCAGAAGCCATACGTGCCTAGACAACGAGCGTTTATGACGTTTTAGAACA CCCAAAAATGTGATTTTTTTTACTTTCCACTTTATATATTATCAAGCCTAAAACTGTTACAAAATGAGTTTCTGAACACC AAAACATGCATGGTCTTTTAATCTATACCTAACATGCATGTTTCTTTAATCTATGTCACATGTTTTGAATGGTGCAGGAG CATATGGAGCTAAGATCACTTTCGTCAACAAGTGTTCATACACCGTGTGGCCAGGAACCTTAACCGGCGCACAAAAGCCT CAGCTCTCCAAAACTGGTTTCGAGCTACCGTCCGGACAAACCACCTTCGTTGACACCCCAACTCCGTGGGAGGGCCGATT TTGGGGCCGAACCGGCTGCTCCACCTCCTCCGGCAAGTTCACCTGCGCCACCGCAAACTGCGGTGACCAGCTCGAATGCA ACGGAGCTGGCGCAGTCCCACCGGCCACCTTAGCAGAGCTCTTCGTCGCACCTAACGGTGGACAGAACTTCTACGACATC AGCAACGTGGACGGCTTCAACCTTCCCATGTCCATTGCTCCGGAAGGCGGTTCCGGCGAATGCAAGCCCTCCAACTGCCC GGCGGATCTCAACGCCCAGTGCCCGGCGGAGCTGCAGAAGCAAGATGGTGGGAAGGTGGTTGCTTGCAAGAGTGCTTGCT TGGCTTTCAATAAGCCAGAGTATTGTTGCACCGGTGAATTCGGCACGCCGGAAAAGTGCAAGCCAACACAGTATTCTCAG TATTTTAAACAACGGTGTCCTCAGGCTTATAGCTACGCTTATGATGATAAGAGCAGCACCTTTACCTGCTCCCAGGGACC TAACTACACCATCACATTCTGCCCTTGAAGTTATACACATTATGGCAACTCTTTGCTTTAATGTACATGATTACTACAAA AATAATAAGAATAATTTGTATATGTTTTAATAAATTAAATTACGTCAGTTACTTCTCTTCTATAGTTTCTCATGTTTCCA AATTAAAACAAACATTAATTTTATCACTAAATCAGTGAATCTTCTTTTGAAAAAAAATGGTTAAACTTAGAGAGGCACCT CCAGGCTTACCAAACAAGAGGACCTTCCTG
CDS sequence (LotjaGi1g1v0685200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATGCACGAGTTGCTCTCTGCCTTATTTTTGCCTGCTTCCTCTGTGGAGCATATGGAGCTAAGATCACTTTCGT CAACAAGTGTTCATACACCGTGTGGCCAGGAACCTTAACCGGCGCACAAAAGCCTCAGCTCTCCAAAACTGGTTTCGAGC TACCGTCCGGACAAACCACCTTCGTTGACACCCCAACTCCGTGGGAGGGCCGATTTTGGGGCCGAACCGGCTGCTCCACC TCCTCCGGCAAGTTCACCTGCGCCACCGCAAACTGCGGTGACCAGCTCGAATGCAACGGAGCTGGCGCAGTCCCACCGGC CACCTTAGCAGAGCTCTTCGTCGCACCTAACGGTGGACAGAACTTCTACGACATCAGCAACGTGGACGGCTTCAACCTTC CCATGTCCATTGCTCCGGAAGGCGGTTCCGGCGAATGCAAGCCCTCCAACTGCCCGGCGGATCTCAACGCCCAGTGCCCG GCGGAGCTGCAGAAGCAAGATGGTGGGAAGGTGGTTGCTTGCAAGAGTGCTTGCTTGGCTTTCAATAAGCCAGAGTATTG TTGCACCGGTGAATTCGGCACGCCGGAAAAGTGCAAGCCAACACAGTATTCTCAGTATTTTAAACAACGGTGTCCTCAGG CTTATAGCTACGCTTATGATGATAAGAGCAGCACCTTTACCTGCTCCCAGGGACCTAACTACACCATCACATTCTGCCCT TGA
Protein sequence (LotjaGi1g1v0685200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNARVALCLIFACFLCGAYGAKITFVNKCSYTVWPGTLTGAQKPQLSKTGFELPSGQTTFVDTPTPWEGRFWGRTGCST SSGKFTCATANCGDQLECNGAGAVPPATLAELFVAPNGGQNFYDISNVDGFNLPMSIAPEGGSGECKPSNCPADLNAQCP AELQKQDGGKVVACKSACLAFNKPEYCCTGEFGTPEKCKPTQYSQYFKQRCPQAYSYAYDDKSSTFTCSQGPNYTITFCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 240 | 240 | 4.1E-98 | ||
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 240 | 237 | 1.1E-111 | ||
| PANTHER | 4 | 240 | 237 | 1.1E-111 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| ProSiteProfiles | 21 | 240 | 220 | 49.293 | ||
| Gene3D | 22 | 240 | 219 | 1.6E-96 | ||
| Phobius | 22 | 240 | 219 | - | – | |
| PRINTS | 23 | 35 | 13 | 9.3E-22 | ||
| CDD | 23 | 239 | 217 | 3.17644E-124 | – | |
| SUPERFAMILY | 23 | 240 | 218 | 6.93E-81 | ||
| SMART | 24 | 240 | 217 | 1.4E-127 | ||
| Pfam | 28 | 240 | 213 | 1.3E-82 | ||
| PRINTS | 71 | 82 | 12 | 9.3E-22 | ||
| PRINTS | 83 | 112 | 30 | 9.3E-22 | ||
| PRINTS | 121 | 137 | 17 | 9.3E-22 | ||
| PRINTS | 230 | 239 | 10 | 9.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0685200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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