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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0685600 |
| Transcript ID | LotjaGi1g1v0685600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|Q40206|Q40206_LOTJA RAB1X; Found in the gene: LotjaGi1g1v0685600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125255082..125257778) extracted from Lotus japonicus Gifu genome v1.2.
ACAACCACAGATAACATATTCATCAGAGAAAATGAGTTCATCCTCAGGTGGCTATGATCTCTCTTTCAAGATCTTGTTGA TTGGAGATTCTGGTGTGGGAAAAAGCAGCCTACTTGTCAGCTTCATTTCCAGTTCTGTAGAGGATCAATCACCCACCATT GGTAATTTAGTCCCCATTTTTTTCTGTTTGATTTCACCTTCTATCTTCAATCAAGCATATATAGGATTTTATTGCCACAC TTCACTCTTGTTGATTGTTCTCAAGGCTCAACTAAACACTGCCTCATCATCCTTGTGGATCTGTTATTTAAATTTGCAAG ATTTCAAATGAGTTTCAGTAGAGAATCTGCTTTGCATTGCAGACTCATCAAATTCTGATTATTTCTGTATTCATAACATG TTTGGATCAACTTCTTTTTTCTCATAATCAGTTATGGGTGCCAGAACCACTCACATTAGCTATTATGTAGAATTGATTCT GTTTTGAGAATCAGTTGTAGAATGATTTCCAAACTCAGTTGGCCTTCAGTTAGTGACTTTGCATAATACTTTAGCCATTG GATGCCATTGAGTAGGATTTAACTGCTCTATAGATTTGCTCCTTTTATGCCTCTAGAATCAACAAAGTATTGAATCTATG CTCTCATGTAATGCAATGTTGCTTTAATGTGATTTGAATTTTTATATGATCTAATATTCTAATGTTGTTTCTATGATTCT TAGGTGTTGATTTTAAGATCAAAATGCTCACAGTAGGTGGGAAGAGATTAAAACTAACAATTTGGGACACAGGTAATGTG TATATAGTCAAATCTTGTGCTTTCCAGTTCTAGTAATTAGACCTTTTGTTCATTCCCGGCAGCATGTGTTTCAAACAGAT AGGAAATGTCCCTCAAAGAGTGTTTCTGTTGAGTCATTTGTCCATTGGCCAAAATGGCTAATTTAAGTGGTAAATTGACT TGTAAAATAACATTGTATCTATTGCAGCGGGACAGGAAAGGTTCAGGACTCTAACCAGTTCTTACTATAGAGGAGCGCAA GGAATCATTCTTGGTATGCTAAGGCTTTAGCATTTTATTAGCATGTTTGAATAAAATTATCTTTCGTCATAATCAATTCT AGTAACCAGAAGCTATTCACGCTCCTCAGGATTTATTTTGGTTTTAGAATCAATTATAAAATGATTTCCAAACATGTGAT ATGTATACATAAGGTTATCTATTCTCTTCCACTAGAATTTCTTTATGGAGAAATTTATTTTCACAACTAGCACTAAACTC TGTTTTGACATTATACTTTCATCTATGCCCTTGATATTTCTTCAGAGTGGTGCCGGATAAAAGTATATCAAAATCAAGCA TTTGTCAGGTGTTATGAATCTTGGTTTCCTCCTATGATTTTGATGCTTTGGGTTAAATGTATGTTGCAAATGTAAATTAA TTATTAGACAGGTTTTACAATTACAACTAGGTTAACAAGGTGCTTCTCAAGAACATCCCCCATTGTCTTTTATGTTCCTT TTATGGCGTGGAGAGTTCAGTAAGCATATTTTTCTTGGGGCTGAAGGCAGCCTTCTGAACCATAATGTTGTTATAGTTAA ATTGGATAACGTATGTGCATGTTTGAATTGTTGCTAGTTAACATCTTTTAACTTTTAATGGTTTTTATTTATAGAGTGCT TCATTTTCTTTTCTTCTAGTTTATGATGTCACAAAAAGAGAAACCTTTACAAACTTATCCGAAGTGTGGTCTAAGGAACT GGAACTCTATTCAAGTAATCAAGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGTAAGTTTCAACACTCTAG TATCAGGCCTGAACATATTTTACCAAAGGAAATGAATCTGTAACATAGATCCAATCATTCTAGGACTTAGAATGGATCCT CTCACATGATAGGTGGCACATTCTATTTGATCTATTCTTTTCAGTAATTTCTGTAATGCTTTATTTCTTCAATATTAGGA TGCTGCTAGGGCTGTGAGCAGAGAAGAGGGTTTAGCCCTTGCCAAAGAACTGGGGTGTTTGCTTATTGAATGCAGTGCTA AAACTCGAGAAAATGTGGAACAATGCTTTGAAGAACTGGCTCTAAAGGTGCACTTTTACAAGCCCTTTGTCTTAATGCTG TTTTTGTCATGTCCATAAGACAACTTTCCAATTAGACAGTAGGATCATTAATTCTTAAGCTTAAACATGTGTTTTGAAAA TCAATTGAGAAAATTTCTTCTGTAAAAGGTGCTTTATATTGTAATTTTTGGGACAGTAGCAACAAATGTTGATGCAGAAG TACCTAATATTTGCTTTAGCAGTCAGTAAGAATAGACCAGTGGAAAGTGAGTACTTCATCTGGTTTTAAGAAATTAGGTT AATATTCTAAAAGAGATACAATCATTGATTTTAAGAGGAAATTATTACTTGAAAAATTTCAAACAAGGAACAAGAGTGAA ACTGCAGCAGTAATGATATTTTGCTTGAGTGAAGATCCTATTTGTAGATTGATTGCTCTGTATTGTTTTTCCTAACAAAT GTTAATGAATATGCACCATTGTATAGATAATGGAAGCTCCTAGTCTTCTGGAAGAAGGATCAACAGCAGTAAAAAGGAAT ATTTTGAAGCAGAAACAAGAACCTCAAGCATCCCAACATGGTGGTTGTTGCTCCTAA
CDS sequence (LotjaGi1g1v0685600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCATCCTCAGGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATTGGAGATTCTGGTGTGGGAAAAAGCAGCCT ACTTGTCAGCTTCATTTCCAGTTCTGTAGAGGATCAATCACCCACCATTGGTGTTGATTTTAAGATCAAAATGCTCACAG TAGGTGGGAAGAGATTAAAACTAACAATTTGGGACACAGCGGGACAGGAAAGGTTCAGGACTCTAACCAGTTCTTACTAT AGAGGAGCGCAAGGAATCATTCTTGTTTATGATGTCACAAAAAGAGAAACCTTTACAAACTTATCCGAAGTGTGGTCTAA GGAACTGGAACTCTATTCAAGTAATCAAGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATGCTGCTAGGG CTGTGAGCAGAGAAGAGGGTTTAGCCCTTGCCAAAGAACTGGGGTGTTTGCTTATTGAATGCAGTGCTAAAACTCGAGAA AATGTGGAACAATGCTTTGAAGAACTGGCTCTAAAGATAATGGAAGCTCCTAGTCTTCTGGAAGAAGGATCAACAGCAGT AAAAAGGAATATTTTGAAGCAGAAACAAGAACCTCAAGCATCCCAACATGGTGGTTGTTGCTCCTAA
Protein sequence (LotjaGi1g1v0685600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSGGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDQSPTIGVDFKIKMLTVGGKRLKLTIWDTAGQERFRTLTSSYY RGAQGIILVYDVTKRETFTNLSEVWSKELELYSSNQDCVKMLVGNKVDRDAARAVSREEGLALAKELGCLLIECSAKTRE NVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 177 | 177 | 0.0024 | – | |
| PANTHER | 5 | 201 | 197 | 4.1E-111 | – | |
| PANTHER | 5 | 201 | 197 | 4.1E-111 | – | |
| Gene3D | 6 | 207 | 202 | 4.6E-63 | – | |
| ProSiteProfiles | 7 | 208 | 202 | 32.238 | – | |
| SUPERFAMILY | 8 | 196 | 189 | 6.55E-58 | ||
| SMART | 9 | 176 | 168 | 1.6E-31 | – | |
| TIGRFAM | 12 | 168 | 157 | 1.2E-29 | ||
| PRINTS | 12 | 33 | 22 | 7.5E-37 | – | |
| SMART | 12 | 176 | 165 | 6.5E-101 | – | |
| CDD | 12 | 173 | 162 | 4.98038E-99 | – | |
| Pfam | 13 | 174 | 162 | 1.1E-54 | ||
| SMART | 14 | 177 | 164 | 6.3E-14 | – | |
| SMART | 17 | 207 | 191 | 1.4E-4 | – | |
| PRINTS | 34 | 50 | 17 | 7.5E-37 | – | |
| PRINTS | 52 | 74 | 23 | 7.5E-37 | – | |
| PRINTS | 116 | 129 | 14 | 7.5E-37 | – | |
| PRINTS | 151 | 173 | 23 | 7.5E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0685600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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