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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0685800 |
| Transcript ID | LotjaGi1g1v0685800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT2G36830.1 gamma tonoplast intrinsic protein; Swiss-Prot: sp|Q9FY14|TIP1_MEDTR Probable aquaporin TIP-type; TrEMBL-Plants: tr|Q9LKJ6|Q9LKJ6_LOTJA Water-selective transport intrinsic membrane protein 1; Found in the gene: LotjaGi1g1v0685800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125272155..125274840) extracted from Lotus japonicus Gifu genome v1.2.
ATAGGATTCATTCCTTTCTGCCTTGGTGCTTTTTAACAACCTGATTCCTCTCATTTTTGGAACTAATCATTTTCAATATT ACCTGCGTATAGCTGGTAACTAGCAGATAACTAAGCTTCTTAAGCATCTAATTCAGATAGTTGAGCTTCTTAAGCAACTG AATTATGTATAGATAATGATTTCTTAGAAGTTAATATAATTTATCTGAGTCTCGAGATGATTAATCTCATAGCTGACGGA TCAGATGCGATAATAGTTTTTTAAAAGAAATCCAAAATATTGAAGAAGTGTAACCGGTAACCGGGAATAGCCGGTGGATG TCTAGGCAGATCCTTGTCCATATAACAGAGCGAACGGAGGTTGAAAAAACCAGTAGCAGCAACAGCGAAACAGAGAGTGA GCTTCTTCTTCTTCTCACAGTGAGTGTTGATCATCGTTTTCCTACAGTCGCCGGAAGAAGATGCCGATCCGCAACATCGC CATCGGTGCCCCTCAGGAGGCAACCCACCCAGACACCTTGAGGTCAGCCTTGGCTGAGTTCATCTCCACCTTCATCTTCG TCTTCGCCGGCTCCGGTTCCGGAATCGCCTACAACAAACTCACCGACGACGGCGCCGCCACCCCCGCCGGCCTCATCTCC GCCTCCATCGCCCACGCATTCGCCCTCTTCGTCGCCGTCTCCATCAGCGCCAACATCTCCGGCGGCCACGTCAACCCCGC CGTCACCTTCGGCCTCTTCGTCGGCGGTAACATCTCCTTCCTCCGCGGTGTCATCTACATCATCGCTCAGCTTCTCGGAT CCATCGTCGCCTCCTTGCTCCTCGCCTTCGTCACCGGACTCGTAAGGCCGTTATAACCGTCACCACCATTCATAACCGTC TCTGATTTATTTTTTAAATTTTTAATTATTTTTTCTAACTGTGGGTTTTGTTATGGTGTATCGCGTGTAGGCTGTACCTG CTTTCGGTCTTTCAGCTGGAGTTGGAGTTGGGAACGCGTTGGTGTTGGAGATCGTGATGACCTTTGGATTGGTGTACACA GTTTACGCCACAGCCGTTGATCCCAAGAAGGGTAGTTTGGGAACTATTGCACCTATTGCTATTGGTTTCATTGTTGGTGC TAACATTTTGTTGGGTGGGGCATTCGACGGAGCATCCATGAACCCCGCCGTGTCATTCGGACCAGCCGTCGTGAGCTGGA GCTGGTCTAACCACTGGATCTACTGGGTCGGACCACTTGTTGGTGGTGGTATTGCTGGACTTATCTATGAGGTGGTTTTC ATTGGCAGCCAAACCCATGAACAGCTTCCTACTACTGACTACTAGAGGGAAGTGAAAGTGAAAATGAAAATTGTGTATTA TTGAATTTCTCTGAATTTTTCCTTTGTGCATCATGTTTCATTCCACTCTTGTCCTTTATTTTATCTTCAAAAATTGGGAG TTGTTTCTTTTGTGTTGAATGAATTGGTGGCTGTTGTTGATCTGTGGTTCTATGGTTGTATGGTTGATGATCATGTAAGT TATGTTCCAAACAGCTCCACCATTGAAATTGAATGTTAATTATTTGGGTCTGGTTGGATGTTTTATTTCACTTCTTTTTA TTTTTGTTTTTATGAATCCTTTTCAACTAACAAACATTTACATTAATTTAGTCTGTCCTTCACCATGTTTCAACACACTT CTAGTAGAATCACAAGTTAAAAGGACAATCCACTCATTGGCTAGAATAGAGTAAAGTATTGACTCATTTAAAAAAAAAAA TGTAATGTATACACCTAATTAAGAATGAGAGAAATTTATAAATGTGATGTATAATGTGAAGTAATAATGGAGAAAAAAAA TACAATGTATGTGAGGTGTAGATACCACTTAAATATTTTAAAATAAGCTTTTAGTAATTTTAAGAATTGTGGAATTTGGG AATCACCACTGATCGGATTCAGATGAGTGTTGATTGAAGAGGAATAGTGAGCAGTTAGCTTCCGGTGAGTGCGGGCGGTT GAATCAATATAAGCCTTCGTGTTTTGGCGCAACTCCTCTGTCATAGTAGATGTCTTATCTTTCTTTGTTAGATTCGAGGT TGTTATAAATATCTGGTACGTTCTCGAGCTTCGCGCCCTTGTCTCAATTGTACTGTAGTCATGTGATTTGATAGAGCGAG ATGACATAAACACCCTCAGTTTGGGAATATATTAAAGGAAACAATGAGGACACATCGCCAGTCCAAATAAGGGTTGTTGA AGGTCATAATCGGAAATGAGTTGAATCGACGCGATCTGATCCGATCCAACTCCAAAACAAACACTTTAAGCAATTAACCC TATCATTTTGTGAAAGAATCGTGTAGAGATTTTCAAAATAAAAATAATTGTTAATCATGCTGTGATACTGAGTTTATTTG TATGACGAGATAATTATGATGATGATAGTCAAAAATATGTTTGGTAAATGTAGAGTCGTCCAAGAGTAAAGCCACCCACG CAAGAGTTTTAGGCCTCCCAAAAAAAAAATTTACTAAGGAAAAAAAGGCCTTAAAAAATATTTGTTTTATTAAGTAAAAA AAGCATAAAAAACTAAACATTAATATTAAGTCAAAAGGACCCAAAAAAAGACCTACTTTAAAGTTGGTTTAAGACCTCAT TTAGGGTTGAGTCAACCCTGGATAAACGCGAGCTTAATATTTATGG
CDS sequence (LotjaGi1g1v0685800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGATCCGCAACATCGCCATCGGTGCCCCTCAGGAGGCAACCCACCCAGACACCTTGAGGTCAGCCTTGGCTGAGTT CATCTCCACCTTCATCTTCGTCTTCGCCGGCTCCGGTTCCGGAATCGCCTACAACAAACTCACCGACGACGGCGCCGCCA CCCCCGCCGGCCTCATCTCCGCCTCCATCGCCCACGCATTCGCCCTCTTCGTCGCCGTCTCCATCAGCGCCAACATCTCC GGCGGCCACGTCAACCCCGCCGTCACCTTCGGCCTCTTCGTCGGCGGTAACATCTCCTTCCTCCGCGGTGTCATCTACAT CATCGCTCAGCTTCTCGGATCCATCGTCGCCTCCTTGCTCCTCGCCTTCGTCACCGGACTCGCTGTACCTGCTTTCGGTC TTTCAGCTGGAGTTGGAGTTGGGAACGCGTTGGTGTTGGAGATCGTGATGACCTTTGGATTGGTGTACACAGTTTACGCC ACAGCCGTTGATCCCAAGAAGGGTAGTTTGGGAACTATTGCACCTATTGCTATTGGTTTCATTGTTGGTGCTAACATTTT GTTGGGTGGGGCATTCGACGGAGCATCCATGAACCCCGCCGTGTCATTCGGACCAGCCGTCGTGAGCTGGAGCTGGTCTA ACCACTGGATCTACTGGGTCGGACCACTTGTTGGTGGTGGTATTGCTGGACTTATCTATGAGGTGGTTTTCATTGGCAGC CAAACCCATGAACAGCTTCCTACTACTGACTACTAG
Protein sequence (LotjaGi1g1v0685800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIRNIAIGAPQEATHPDTLRSALAEFISTFIFVFAGSGSGIAYNKLTDDGAATPAGLISASIAHAFALFVAVSISANIS GGHVNPAVTFGLFVGGNISFLRGVIYIIAQLLGSIVASLLLAFVTGLAVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYA TAVDPKKGSLGTIAPIAIGFIVGANILLGGAFDGASMNPAVSFGPAVVSWSWSNHWIYWVGPLVGGGIAGLIYEVVFIGS QTHEQLPTTDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 251 | 251 | 1.3E-134 | ||
| PANTHER | 1 | 251 | 251 | 1.3E-134 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Gene3D | 4 | 251 | 248 | 8.3E-88 | ||
| SUPERFAMILY | 13 | 240 | 228 | 5.89E-68 | ||
| Pfam | 14 | 233 | 220 | 8.9E-75 | ||
| PRINTS | 21 | 40 | 20 | 4.1E-53 | ||
| CDD | 21 | 236 | 216 | 3.8512E-67 | ||
| TMHMM | 22 | 44 | 23 | - | – | |
| Phobius | 23 | 44 | 22 | - | – | |
| TIGRFAM | 25 | 233 | 209 | 3.2E-51 | ||
| Phobius | 45 | 55 | 11 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 56 | 75 | 20 | - | – | |
| PRINTS | 65 | 89 | 25 | 4.1E-53 | ||
| Phobius | 76 | 86 | 11 | - | – | |
| ProSitePatterns | 83 | 91 | 9 | - | ||
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 87 | 108 | 22 | - | – | |
| PRINTS | 102 | 121 | 20 | 4.1E-53 | ||
| Phobius | 109 | 114 | 6 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 115 | 138 | 24 | - | – | |
| Phobius | 139 | 143 | 5 | - | – | |
| TMHMM | 144 | 163 | 20 | - | – | |
| Phobius | 144 | 163 | 20 | - | – | |
| PRINTS | 146 | 164 | 19 | 4.1E-53 | ||
| Phobius | 164 | 169 | 6 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 170 | 192 | 23 | - | – | |
| PRINTS | 179 | 201 | 23 | 4.1E-53 | ||
| Phobius | 193 | 215 | 23 | - | – | |
| PRINTS | 216 | 236 | 21 | 4.1E-53 | ||
| Phobius | 216 | 236 | 21 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 237 | 251 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0685800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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