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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0686300 |
Transcript ID | LotjaGi1g1v0686300.1 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine protein phosphatase 2A regulatory subunit B; TAIR: AT3G09880.1 Protein phosphatase 2A regulatory B subunit family protein; Swiss-Prot: sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; TrEMBL-Plants: tr|A0A0S3RYS9|A0A0S3RYS9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0686300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125347292..125352883) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAGTCCAAACTCATGAATAGAGGAAAGCAAACAAACAAGCTCATGAAAAAGTCAGAAAACTCATTCAATAATTCCAC TTCACTAGATGAGAATGAGAATGGGAGAAAGAAAGTGCTTTCTCAAAATCACTTAATTGGATTATTACTTAAATTCATAG TAACATAATATCTTCCTTAATTCCCCCAATTACTCCACTCCCTCGCACTCCCTCTCTCTCTCTCTCTTTCGCTGTCTCAG CAACGTTTCTCTGATCGCCGGAACCATCTCCGGCGGCCGCAGCTCCGGCCACCGCACCCATCATCCACCACTCTGATCCA AAACCCGCCGCAGGCCAAGCATTCATGGACTAGCAAGAAGATCTTGCCACCACCTTGCTGCTGCTGCTGCTTCAATCTTC CACAACCCACTTCCCAATTCATCACCTTAGGGTTAGGGTTCGCAGAAAATGTTCAAGAGAATAATGAAAGGAGGAGGAGG GCAGAAGAAGCCCTCAAAATCCGACCCCACCGATCAATCCGCCTACGGGTACGGTCCCCCGGCGGCGGTGGAGGTTCCAC CGCCGTCGGGAACCATCGAGCCGCTCCCCCTCTTCCGCGACGTTCCGGTTTCCGAGAGGCAGAACCTCTTCCTGCGGAAA CTGCAAGTCTGCTGCCACCTGCTGGACTTCTCCGACACGCTGAAATCGGTCCGGGAGAAGGAAATCAAACGGCAGTCGCT GATGGAGTTGGTGGATTTCATCCAGTCCGGTTCCGGCAAGATAACGGAGACTTGCCAGGAAGAGATGATCAGAATGGTGT CAGTCAACATTTTCCGGTGCTTGCCGCCGGCGTCTCATGAGAATACAGGGCAGGAAGCCGGTGACCCTGATGAGGATGAG CCGTGTTTGGACCCGGCGTGGCCGCACTTGCAGCTAGTCTATGAGCTTCTTCTCAGATATGTGGTTTCATCTGATACTGA TACAAAGGTAGCTAAACGGTACATTGATCATTCTTTTGTGCTTAAGTTGCTTGATTTGTTTGATTCTGAGGATCCGCGCG AGCGCGAGTATTTGAAGAACATTTTGCATCGTGTGTATGGGAAATTCATGGTTCATAGACCGTTTATTAGGAAGGCGATT AACAACATTTTTTACCGGTTTATATACGAGACCGAAAGGCATAGTGGGATTGGGGAGCTTTTGGAGATTCTAGGGAGTAT CATTAATGGTTTTGCATTGCCCATGAAGGAGGAGCACAAGTTGTTCCTTGTGAGGGCTCTTCTGCCTCTGCATAAGCCTA AGCCTGTAGCTTTGTACCATCAGCAGTTGTCCTACTGCATATCTCAGTTTGTGGAGAAGGATCACAAGCTCGCGGATACT GTTATTAGGGGCTTGTTGAAGTACTGGCCTGTCACCAATTGCCAGAAGCAAGTTCTCTTTCTTGGAGAGCTGGAGGAGGT GCTGGAGGCCACACAGGCTGCAGAGTTCCAGCGCTGCATGGTTCTTCTTTTTAGACAGATTGCACGCTGCCTCAATAGTT CTCATTTTCAGGTTCGTCAAAATTTTGTTTTTCTATTTGTTGATTATGATTAATACAAGCTTTGATAATTGGATTCCAAA TATCCTGTTAACTATTTCTTTGTTTATGAAGATGCATAAACTAGGCCCATATAATTAGCTTTCATAACCTTTAAGTCCCT AACTCTCACTGTAATTACATTCAATTATTGGTTCCAAGTTTTTGAAGTTTTGTGGATTGTTCAGTTGTAGTTTTGCATCT TAATGATGTGTTGGTTGATGGGGAAAAATATCAATGTGGAAAGATACACTGTGATCTATTTGACTTATTTGACTTCAACA ACATACAGAAATGCGAAAGTAGTATTCACATGCACATATACTTCTCTCACGTACATGAGTTATCAGTTCATTTGTGTTAT TCTGCTTGAAAGCTTATTGTTGCTGTCAGAGTTAACCTGAATCTGAATTCAACTGATGACTGATATTTGACTTGTTACTG TATTAATTTTGTAAGTGTATACTGTATTGTCATCATTATTCCTATTAATCGTTTGGTGACGTGCATGTGATGATGTTTTA AGAATGGAAGTAAAGCTGAAAGTTGAAATATGAAACAGATTTTTTATTTCAGCAGAAATGGTTATTGGGTTTAGGGTCTT CTGCACTTCCCGTTCTGATTTATCAGGTCTAATGCAATGCCTATTGTGATTTAATAAATTAAACACATTCCCAATACTAT AACATGACCTTTGCAGTGTGCCAAATCAAGTGTCAACTTTGATGGTATGGGTATCACATGCAACTCATATGATCAATGGG CTAGGAAAAGGAATCCTTAATGAAATTGCTTTCTGTGAAGTTATTGTAAGCTTCCCCCATGCATTGTCTTTTATGACCTG TATTTCTTAAGGAAAGAGAAACGGGGAATATTCCATTAGGGCATAACATGTAGTCATGAGCTGACTAGCATATTTAAATT TTGAGAGCTTCTATATGTTACGAATACAGCCTCCACGAATCGTAAGAACCAAGGACGTGGCAAGTACATGTTGGATGTTT GACGGGAAAAAGAGGAGGTGTGTTGTTTAATATGCAAGTCCATGCATTTCATTCCCGTAACAATTATAATTTTCCTTAAA TTTTATTACTTTTAGCTCTTAAGGAAGTGGTTTGTACTTTGTAAAATTATTAACCTAACGAAAATAGCTTTTACTTTGCA CAAAATCTCTAAACAATATATCACTTGTTTTGCACAAATTTAAAATATTTTTTCTTTGACTTGAAACAGAATTTTGTCTC TTATTAAAACTCTAGAATCTAGAAGTTTGTCCTGATGTAATTTTTTTATTAACTTGAATGTTAATAAGGCTTGTACAATT TAAGTTTGCACCATGGGCAGCCAGAACACTGTTCTTCTTTGACATTAAATTATTCCTATTTGTTAAAATAAGAAATATAT TAGAGAATAATGACAGGAAAACCCTATGAGTGTGTTTTATTTGTGTTTGTGTTTTTTATTTCAGATTTATTCATTTCTGT AAGAAAATTTTGAAAACTAAAATTTGAATAAAAACAACGTTGAATTTTGTATTTATGGGTCACTTTTACTTTTTTTCGTT ATTTTGAACCAGTGAATCTTTCGGTCCGGTCCGGCCTTCCAGTTACGAAGTGGATTGCTCCACTGCAGGATTGGCAGCAG GTTGACCTCCTGCTGGATCCTGCACGTGCAAGGTATACCCACCCGAGCCATTCTTCTTCCACTCACTCTCATAATGAAAA AAGACATTTGGGCCTCATCGAAAAAAGTATCTGCGTGTGATAGGTTCTTTCCGGCCGCGAGAAAAATGCCTCCTCTATGA ATTCTCAGTGCTCCCTAGCTCCTGAAGAAGATTTCAGGATCCACCTTTGGTCTTAAATCCTGTCAACTTAAAATAAAAAC AAGAGAAATAACTAAACAGGCTCTCAGAATGCAGAATCCTGAAGAGAGAGAGAGGGAGAGGCAGAGGCAGAGAGAGATAA TCAAATCTTACCAGTCTCTTTACACCATACCCTTTCTACCTGTTTGGAAATGAATGAGGAAATTGAAATAAGATTACATG TATACATTATCAAGGAACCTCGAGTCAAAATAGTAATTTCATTGCATGTATCAGGTTGAAAATTCTTTTTCATTAGGGTG AAATGATACTCTTTGCTAGACTCTGTTAAGTGTCAGTACATTTCTTGGGAGAAGGAACTTATTGTCTAGAATTTATATGG ATGTGCTTTCATGCCATCTTGATACTACACCTTGGAAGTAATCAATGCTACCAGAAACCAAGGAAGAACCATGATATATT TGTTATTAAAAACTTTTATATAGTTCCCAACATTGCCTTTATTTCCTTATTGAACTTAAGTTCAGTTAAGGTAAAGCTGA AGATGAGTAGGGAGGACTGAATCAGTTCTCCTGTTTAAGAGTTCATTACCACTCAATACCTTCCTATTTTCCGCTTTACC AAATGTGATCTTGGGGTCATTAATGGTAGTTTGAGCTTAAGCTCATCAGATTTGCAAGGCTTAATTCGCTTGAAGGTTGG CAGGGTTGACCTCAAACATCTAAGACATCTGGTGCTTAGGGAAATATGAATTGTCTGCATTTTCTGTGATTAGGTTTATC TGCTTAGTGATATTTAAGGTGATAGGGACTTCTCTGCATAACGCATCCCTGTCCTGCTGTCAATATGGTCTTTAGTTTTG CATGATTGATGATTTTCTACAGGCTTTTAATTTTTTATTAAAAAAATCTAGACTAGTTCTGTGATTATCTTTAGCAAATC TTATCTTTCTAGTGAAAATCTGCATACTAGATTGAGAATCCTGATTGCTTGGAGTTCACTTTTTTTTCTTTAGTTTAGAA ATCTGGTATTGTATTTCATTGATTGATGTGTTACGTGGATGGGTGAATAGGATTAGGAATGAGAAAAATGGAGAGCTGGT TGGGGTAGCATCTATTGTGGAAAATGGCAATCTTGCTTAAGGAGGTTTGGGCATGTATAGAAAAGACCCGTAAAAACACT AATAAAGAGGTAGATCAAATAAGGATTTGGGTTGGTATATCATTAGACTATATTAAGTCATCCTTTGATCCATGTAACTG ATTCCTTTAGTGGTAAAACATTTTGGTTGCTGCATATTTCATTTATTGATGTGATTAGTTTTAAATCATCCCTTCAAAAG TCTAAGGCTCACTAGCAATGCAGGTTGCAGAACGAGCCCTCTTTTTGTGGAATAATGAGCACATTGTCAGCTTAATTGCG CAAAACAGGACTGTAGTATTACCAATAATATTTGAAGCATTGGAGAAAAACATCCAGAGTCATTGGAACCAGGCAGTTAA CGGGCTAACCGTAAACGTTCGGAAAATGTTCCTGGAAATGGATGCTGAATTGTTTGAAGAGTGTCAGAGACAGTATGCAG AAAGAGAGGCTAAAGCCAATGAGGTGGAAGAGCAGCGACAATTGAATTGGAAGAAACTAGCAGAGGTGGCTGCACAGAAC AGGGTGGATATGGTCACAGCATAGCCAAATTTCTTTTCAGCCAGTAGTGTGAATTGGATAGGTGATAAATGTGCGCCTCG CCTATTTGGTGCCATTATTTATTGGTTTCTTCTTCTTCTTATTTTTTTTTCCTGGTTAGTTTCTTTTTCCTCTTCATTTT ATCAGTTGGATGTTCTGCAAGTTAAAGAAAGCAGTGATTTATGTAACTTTAAAATGTATTGGAAGTTGTAAACAATATCT ACAGCTTAAGAATGTTCTGTGAAATACTTGTATTTTCCCCCTACAGAGAGAAATATGGAAGTTTTGTTTCCCTTCTGGAT TTTTTCTTTTGCTGGATTTGCATTCTTTTTTTGTTTTGTCGAAGCTTGATGTAAACTTAGTTGGAGGAGGCTTTTTGCAG TAAAACTTGAGAATGATTCAAGGCAAAGTTTGGTTGTGGAAGAGGACATCAAACTTCAAAAAGATCATTACAGCCCTACA TCATAAAATACATATTAAAACACAAGGCACCCTTGTTGTTGTTTTTTTTTTGTCAATAGGCACCCTTGTTTT
CDS sequence (LotjaGi1g1v0686300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAAGAGAATAATGAAAGGAGGAGGAGGGCAGAAGAAGCCCTCAAAATCCGACCCCACCGATCAATCCGCCTACGG GTACGGTCCCCCGGCGGCGGTGGAGGTTCCACCGCCGTCGGGAACCATCGAGCCGCTCCCCCTCTTCCGCGACGTTCCGG TTTCCGAGAGGCAGAACCTCTTCCTGCGGAAACTGCAAGTCTGCTGCCACCTGCTGGACTTCTCCGACACGCTGAAATCG GTCCGGGAGAAGGAAATCAAACGGCAGTCGCTGATGGAGTTGGTGGATTTCATCCAGTCCGGTTCCGGCAAGATAACGGA GACTTGCCAGGAAGAGATGATCAGAATGGTGTCAGTCAACATTTTCCGGTGCTTGCCGCCGGCGTCTCATGAGAATACAG GGCAGGAAGCCGGTGACCCTGATGAGGATGAGCCGTGTTTGGACCCGGCGTGGCCGCACTTGCAGCTAGTCTATGAGCTT CTTCTCAGATATGTGGTTTCATCTGATACTGATACAAAGGTAGCTAAACGGTACATTGATCATTCTTTTGTGCTTAAGTT GCTTGATTTGTTTGATTCTGAGGATCCGCGCGAGCGCGAGTATTTGAAGAACATTTTGCATCGTGTGTATGGGAAATTCA TGGTTCATAGACCGTTTATTAGGAAGGCGATTAACAACATTTTTTACCGGTTTATATACGAGACCGAAAGGCATAGTGGG ATTGGGGAGCTTTTGGAGATTCTAGGGAGTATCATTAATGGTTTTGCATTGCCCATGAAGGAGGAGCACAAGTTGTTCCT TGTGAGGGCTCTTCTGCCTCTGCATAAGCCTAAGCCTGTAGCTTTGTACCATCAGCAGTTGTCCTACTGCATATCTCAGT TTGTGGAGAAGGATCACAAGCTCGCGGATACTGTTATTAGGGGCTTGTTGAAGTACTGGCCTGTCACCAATTGCCAGAAG CAAGTTCTCTTTCTTGGAGAGCTGGAGGAGGTGCTGGAGGCCACACAGGCTGCAGAGTTCCAGCGCTGCATGGTTCTTCT TTTTAGACAGATTGCACGCTGCCTCAATAGTTCTCATTTTCAGGTTGCAGAACGAGCCCTCTTTTTGTGGAATAATGAGC ACATTGTCAGCTTAATTGCGCAAAACAGGACTGTAGTATTACCAATAATATTTGAAGCATTGGAGAAAAACATCCAGAGT CATTGGAACCAGGCAGTTAACGGGCTAACCGTAAACGTTCGGAAAATGTTCCTGGAAATGGATGCTGAATTGTTTGAAGA GTGTCAGAGACAGTATGCAGAAAGAGAGGCTAAAGCCAATGAGGTGGAAGAGCAGCGACAATTGAATTGGAAGAAACTAG CAGAGGTGGCTGCACAGAACAGGGTGGATATGGTCACAGCATAG
Protein sequence (LotjaGi1g1v0686300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKRIMKGGGGQKKPSKSDPTDQSAYGYGPPAAVEVPPPSGTIEPLPLFRDVPVSERQNLFLRKLQVCCHLLDFSDTLKS VREKEIKRQSLMELVDFIQSGSGKITETCQEEMIRMVSVNIFRCLPPASHENTGQEAGDPDEDEPCLDPAWPHLQLVYEL LLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKNILHRVYGKFMVHRPFIRKAINNIFYRFIYETERHSG IGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVALYHQQLSYCISQFVEKDHKLADTVIRGLLKYWPVTNCQK QVLFLGELEEVLEATQAAEFQRCMVLLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIQS HWNQAVNGLTVNVRKMFLEMDAELFEECQRQYAEREAKANEVEEQRQLNWKKLAEVAAQNRVDMVTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 466 | 466 | 7.1E-301 | – | |
MobiDBLite | 1 | 30 | 30 | - | – | |
PANTHER | 1 | 466 | 466 | 7.1E-301 | ||
PIRSF | 13 | 466 | 454 | 3.4E-237 | ||
Pfam | 46 | 457 | 412 | 2.1E-188 | ||
Gene3D | 53 | 456 | 404 | 2.3E-188 | ||
SUPERFAMILY | 58 | 439 | 382 | 5.76E-157 | ||
Coils | 425 | 445 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Protein phosphatase type 2A complex | A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. | ||
Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
Molecular function | Protein phosphatase regulator activity | Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. |
Expression pattern of LotjaGi1g1v0686300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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