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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0687400 |
Transcript ID | LotjaGi1g1v0687400.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | E3 ubiquitin-protein ligase RFWD3; TAIR: AT5G03450.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q6PCD5|RFWD3_HUMAN E3 ubiquitin-protein ligase RFWD3; TrEMBL-Plants: tr|V7CZT3|V7CZT3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0687400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125464488..125468489) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCTTTCTATTTTGATCTTTCTAGAATTTTTCATGTGGTTGAGATAATTTTACTTTGTTAGCTTTGTCTTGTTGAGTA ACACTTTTTGGCGACAGAGATATGAACGTGGTAATCATCTTTCAAGAACGTGGCAATCTGAACTGATGGATGGCAATGTG TATTCTGAACAGAGATATGAACGTGGTAATCATCTTTCAAGAATTCAGATGACAGATATTCACCTCATAAGATTTGTCTT TATTTGCTTACCCCCTTTCCCTTTTCCTTTCAACAACAAAAGAATATATTTGAAGTTAATTTTATTGAGTACATTGACTC TTATGTTGCATGTATCTTGTAGAGCACAACCAGGGCCCGAAGTCCCATGAAAAAAAACCGTTTTGCAATTTTAAATGTCA GGTATTCCATTCTCTCTATTATCTACTTTGTGGCTCCATGTAATTTAATTCCCATGTGATTTTTTCCCCAAATGTCAAGA ATATACTCCATGTAATCAAGATTGTTTTGTTAAGTATTGTTATATGGTGTGGTAATTGTTTCACAATTTCTAGAATGTGT TACGTGTGGATGGTGCACGTCTATTTGATATGGACACTTCTAATGATGTTCTATTAATAGCACGAAAACCAAAAGCATTC GGTGGAGTACAATTGCTAACCAAAGTAAGATTCTTGAATTTGAAATATTTGTGTATATGTTTGGGGCTTTTGTACCTCTT TATACAATGAATGATTTCACTTTAACCTTTATGGAAACTTGTCTTTGTAGATGAGCTTGATATCTCCATTTGAGATGGAG GATATCTTTTTGTCTTCCACTACATGTGCTATTAGAGACCTGCATATTTCTCCTTCTAACAGTAGACTGGCTCTCTATGC TTCAGAAGGGAAGAAATTATCAGTGCTCAGGTATTATTGCATCAAGTTCTTATTCATTTGTTTAACACAGTAAGGCTTGG TCGTTGATGTATTTTTCATATTATTACAGCTTGGACAGTAGCGACATTGTTGTCAATTATCGTCTACAGGTAGAAGTTTG ATCCTTTATTAGTAGAAATAAAACTGTTAGTTATAGTTTATAATTGTTTTGCTTTATGGCTTGTCAGAATTAGAATATTA TTGCTTATAGCTTTTTATTTTTATTATTAATATGAAAAAATGTTGAGTAAACAATATCATCATTGAATTAAGTAAAAGAG AACAAAAAAGAAGAGCTATGAAGATAGCACTTCATTAAAGTGGAGTTAGCCATACTCTTTGCATAATTGCATGTTTTCTG AAGACTATCTTCCGAAGTACTTGTTAGACGAGCATTAAAAATAAATTAAGAAAACCACTTTATCCCATAAAGGGTGGTGT TTTAACTTGTAAGTAGCTATGCTGAAAATTCTATCATTTCTCTCCAACCTTACGACCAAATAGCAGGCATATAGGGCACT GCAACAGGATTTTGCTCTTTCTGGTTCCCACAAAACCTCAAAAACAACTTAACAAAATGGTTCCAACTAATAGAAATAGA GTTTGATAATAGTTTTTTCCATGTCTTTTTCCCCCTTTTGTACTAATGTTATTGCTTAAACCTCGCATTCTATCATAAGT TAGTCAGTTCAAGGACTTATACCTTTGTTGGAATTGCATTTCAGAATCCTGCTTGGTCATGCTCATGGGATCTCAACAGT ACGAATTATATATATGCGGGACTACAGGTAAGCACCTTGTTTTTTTGTATTTTCATGGATTTAGGAACCTAAAATGCTAA TCTTAATGTAACTTTCCGGCAGAATGGATCTGTGATGGTGTTTGATATGCGCCAAACTTCAGGACCTTTAAAATCTTTAG TTGGGTTGACTAGCTACCCTGTTCACACTGTACAATCTCTTTCACAAACTTCAAGCCTTCATTCTGATGCTAGAACCGTC CTATCCGCATCTGCCAGTGGCATTTGTCAGTGGAACATTGATTCTGAAGATCGGTAGGCTGTTTACATTTTATGGATATT AGCTTTTGCTTTATTATCAATGCCTTATAAATAGCATGTTCAGCTTTTCCTGGTTAACACTTACTATCCCGCAAAATTTG AAACTTCTTTCCAGTTTTCTATAGTAGACTGTTGGTGTGCGTGGGTGTTCACATGTTTGTATAATTAGAGTAATCAGAAT CTTTTTTTTCCAACTTATGCTGCCACTAGGAAAAAATGTACATTTTCCACCTCTTTGGGTGCATCTTTTGTACCTTCCCA TGTTATATTCTTTTGCGTTTTAGAAATTTATATATTACTTAATTATGAACTAAAGTTTGTTCTTCACTCTGAACAAACTT CTGATATTTCATACCGCATTTAGAGTTTTTTGAATGTTTTTTTTTCATGCTCTATTTTTCGCTGCTCTAATTAAGTCTCC TGATTCTCCATTTTTTTAAAAAAATTATGAAGGCCGATTGTGGTTCCTGAAACTGACAATCAAGGAGAGTGTATTTCCCT TGCCTATTGCTCTAGTAGTGATCACATTGTTGGTTCCTACCGTCCAAAGTATGACAAGTCAAAGGACTATCCAATGTTTG ATATGTCGAAGGACCGCCAAATATTTGACATGTCGGAGGGTGTGCCTCTTTCTCCACCATTGCCTACTCCTCAAGTTACT GTACAACGAGACCGGTGCTCTCATGTCTTGTACAAGGGAATGGGCAGTCATGATTTCCAGAAGATGGGTTACACATATGG CAATTTATGGAAAGATCGACTGCCAAAATGTGCAGTTATAGACATGAAGAATCAGGGTACATTCTTTGCATCTGGAGATC AATTTTCAAGGGATTTGCTCTTGTATGAGTTGCCATCTTTCAGAGTTGTTGAGCAATTCGACATGCCAGCTCAGGCCCGT GATGTTAGGTACTCAACTAGCCATGGAGTACTTGGTTGTTTAAGTGATAACACATTAAAACTTTTCAAAAGAAAGGAAGA AAGTGAGAGTGCATGACAACTTCCCCGTACCAATTACCAATCTTTCACGAGGAAGGTAATCCTATAATCAGTGCAATCCT TTCGAGAAAATCAGTGAAGCTGCATTTTTTGTAGTTCTAAATTATGTCTTCGAATTTCAGCTGTACTTTGAGATATTTAT TACACTGCTAGGAGCCTACCATTGCTTTGTTTGTTCTCTAATTTTCTAATTTTATGTTATTAGAGCACTAATGTTGATGC CAATATCGGAATTTTGTGACAGTAGTGAGTAATACATGAAAGGCTTAATAGCTTTTTGGTCCCTAACGTTTCACAATTTG GCAAGGTTGGTCCCTCCAGGAATTTATTAGCCTGAAACGTCTCTTACGTTCACTAACCGTTGCAATTTTAGTTTTCCGTC CACTTCCGTTAAATATTTAACGGTTTTTATTAAAAAATTAATAAAAAATAAAACAGCACCTTCAACATATTCATCAATCT TCATCTTCTTCATCATCTTACCCAGGAAGAAGAAAATCCCAAATTCACAAAAGTAAATCTCAGAACAACTTATTCAGCAA AAGCAACAAACTTTATCTGAGAAAGAAGAAAAAAAAATCAGAGAAATTCCCACAACCAATCACCAGTACCCCAACGTTGA AATGGAAGAAGCTCTTCTTTTCTTCCACAACATCACCCTTTCAAAACCCAAGAACAACAAAACCCAGAACCCTTCAAAAC CCAACAACAAAACCCATAAACCACCACCCCCACCGCCATACCCAACCCCACCACCACAGAGAACCTCGTTCGCACACTAA TGGCTTCCAAGCAACCACAACAAAATCAGAGAGGAGGTGATGGTGGCGCGCACGACTTCAGGGACAAAGGTGACAACGGC GCGATCTAGAACTCGTAGGAGTGGTGGGGGCGTGACGGATCTTGGGTGGTTGTGGCTCGGTGACGCGATTTAAGGGAGGA GGAGGAGATGGTGGCTGACGGCTATTGGGTTGAGAGAGGGGAAGAGAAGAGCTAGGGTTTTTTATTTTGGTTAAATGTTG GG
CDS sequence (LotjaGi1g1v0687400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGCAATGTGTATTCTGAACAGAGATATGAACGTGAGCACAACCAGGGCCCGAAGTCCCATGAAAAAAAACCGTT TTGCAATTTTAAATGTCAGAATGTGTTACGTGTGGATGGTGCACGTCTATTTGATATGGACACTTCTAATGATGTTCTAT TAATAGCACGAAAACCAAAAGCATTCGGTGGAGTACAATTGCTAACCAAAATGAGCTTGATATCTCCATTTGAGATGGAG GATATCTTTTTGTCTTCCACTACATGTGCTATTAGAGACCTGCATATTTCTCCTTCTAACAGTAGACTGGCTCTCTATGC TTCAGAAGGGAAGAAATTATCAGTGCTCAGCTTGGACAGTAGCGACATTGTTGTCAATTATCGTCTACAGAATCCTGCTT GGTCATGCTCATGGGATCTCAACAGTACGAATTATATATATGCGGGACTACAGAATGGATCTGTGATGGTGTTTGATATG CGCCAAACTTCAGGACCTTTAAAATCTTTAGTTGGGTTGACTAGCTACCCTGTTCACACTGTACAATCTCTTTCACAAAC TTCAAGCCTTCATTCTGATGCTAGAACCGTCCTATCCGCATCTGCCAGTGGCATTTGTCAGTGGAACATTGATTCTGAAG ATCGGCCGATTGTGGTTCCTGAAACTGACAATCAAGGAGAGTGTATTTCCCTTGCCTATTGCTCTAGTAGTGATCACATT GTTGGTTCCTACCGTCCAAAGTATGACAAGTCAAAGGACTATCCAATGTTTGATATGTCGAAGGACCGCCAAATATTTGA CATGTCGGAGGGTGTGCCTCTTTCTCCACCATTGCCTACTCCTCAAGTTACTGTACAACGAGACCGGTGCTCTCATGTCT TGTACAAGGGAATGGGCAGTCATGATTTCCAGAAGATGGGTTACACATATGGCAATTTATGGAAAGATCGACTGCCAAAA TGTGCAGTTATAGACATGAAGAATCAGGGTACATTCTTTGCATCTGGAGATCAATTTTCAAGGGATTTGCTCTTGTATGA GTTGCCATCTTTCAGAGTTGTTGAGCAATTCGACATGCCAGCTCAGGCCCGTGATGTTAGGTACTCAACTAGCCATGGAG TACTTGGTTGTTTAAGTGATAACACATTAAAACTTTTCAAAAGAAAGGAAGAAAGTGAGAGTGCATGA
Protein sequence (LotjaGi1g1v0687400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGNVYSEQRYEREHNQGPKSHEKKPFCNFKCQNVLRVDGARLFDMDTSNDVLLIARKPKAFGGVQLLTKMSLISPFEME DIFLSSTTCAIRDLHISPSNSRLALYASEGKKLSVLSLDSSDIVVNYRLQNPAWSCSWDLNSTNYIYAGLQNGSVMVFDM RQTSGPLKSLVGLTSYPVHTVQSLSQTSSLHSDARTVLSASASGICQWNIDSEDRPIVVPETDNQGECISLAYCSSSDHI VGSYRPKYDKSKDYPMFDMSKDRQIFDMSEGVPLSPPLPTPQVTVQRDRCSHVLYKGMGSHDFQKMGYTYGNLWKDRLPK CAVIDMKNQGTFFASGDQFSRDLLLYELPSFRVVEQFDMPAQARDVRYSTSHGVLGCLSDNTLKLFKRKEESESA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 23 | 23 | - | – | |
PANTHER | 8 | 389 | 382 | 6.0E-107 | ||
Gene3D | 40 | 261 | 222 | 2.1E-13 | ||
SUPERFAMILY | 85 | 386 | 302 | 1.77E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
Biological process | Interstrand cross-link repair | Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA. DNA interstrand crosslinks occur when both strands of duplex DNA are covalently tethered together (e.g. by an exogenous or endogenous agent), thus preventing the strand unwinding necessary for essential DNA functions such as transcription and replication. |
Expression pattern of LotjaGi1g1v0687400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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