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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0690300 |
| Transcript ID | LotjaGi1g1v0690300.5 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125807358..125809664) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCATTATTTCTTAATTAAGATTAACATGGCCCCAAACACCAACGCCACGCAAAACGGTTCCATCTTCTGCAACACT GTCAAAACCGCCGCCACTGATCCGTTAAGTTGGGGGGTCGCGGCGGAGTCCATGAAAGGGAGCCACCTCGACGAGGTCAA GCGCATGGTGGCGGAGTACCGCAAGGCGGTGGTCAAGCTTGGCGGAGAGACTCTCACAATAGCTCAGGTAGCTGCCATCG CCGCAAACCACCAAGGCGTGAGCGTTGAGCTTTGTGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTCATG AACAGCATGAACAACGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGCGCCACCTCCCACCGCAGAACCAAAAATGG CAATGCTCTGCAGCTAGAACTCATCAGGTACTATACTATACTATACTAACTCAATTCCACACATATTGCATTGTATACAA GTTGTTGATTAATCATCATATTTACAATTGCATTGTATCAAAGTGTTGATGTTTATATATTAATTCTTGTTGTTCAGGTT TTTGAATGCTGGAATATTTGGCAATGGTACTGAATCAACTCACACCTTGCCACAGCCTGCAACTAGAGCAGCAATGCTAG TGAGGATCAACACACTTCTCCAGGGATACTCAGGCATTAGGTTTGAAATCCTTGAAGCCATCACCAAGCTCATCAACAAC AACATCACCCCATGTTTACCACTTCGCGGTACCGTCACGGCTTCCGGTGATTTGGTCCCACTTTCTTACATTGCTGGTTT GCTAACCGGCCGGCCGAACTCCAAAGCTGTTGGACCTTCCGGTGAGGTGGTTAATGCCAAGGATGCTTTCCAATTGGCTG GCATTGACTCAGGGTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGCTCTTGTTAATGGTACTGCTGTTGGTTCAGGGTTA GCTTCTATTGTTCTATTTGATGCTAACATATTGGCTATACTGGCTGAAGTTCTATCGGCTATTTTCGCTGAAGTGATGCA AGGGAAACCTGAATTTACTGACCATTTGACACATAAGTTGAAGCACCACCCTGGCCAAATTGAGGCTGCTGCTATCATGG AGCACATTTTGGATGGAAGTTCCTACATGAAGGCAGCAAAGAAGTTGCACGAGGTGGATCCTTTGCAAAAGCCAAAGCAA GATCGATATGCACTTCGTACTTCTCCACAATGGCTCGGTCCTCTGATTGAAGTGATTCGATTCTCAACAAAGTCGATCGA GAGGGAGATCAACTCAGTGAACGACAACCCTTTGATCGATGTTTCCAGAAACAAGGCCTTGCACGGTGGTAATTTCCAAG GAACCCCTATTGGAGTTTCCATGGACAACACACGTCTGGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAGTTCACT GAGCTGGTTGATGATCATTACAACAATGGCTTACCTTCAAATCTCACTGCTAGTAGGAATCCTAGCTTGGACTATGGTTT CAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCGGTCACCACTCATGTCCAAA GTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCAAGAAAAACCAACGAAGCCATTGAGATCCTT AAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAATACTC AGTGAAGAGCACAGTAAGTCAAGTTGCAAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCTAGATTTT GTGAAAAAGATTTGCTGAAGGTGGTCGATAGAGAAACTCTATTTGCCTATATTGATGACCCATGCCTTGCTACTTACCCA TTGATGCAAAAACTGAGGCAAGTGCTTGTGGACCATGCGTTAGTAAATGGAGAATACGAGAAGGACTCAAAGACATCAAT CTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCTAAGGAGGTCGAAAGCGCAAGGGCTGCATATG AGAGTGGAAATCCAGCAATGCCAAACAAGATAAATGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGGAAGGAGCTG GGAACTGAGTTGCTAACCGGTGAAAAGACCAGGTCTCCGGGTGAGGAGTGTGACAAATTGTTCACAGCAATATGCCAGGG TAAAATTATTGATCCACTTCTGGAATGCCTCGGAGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA
CDS sequence (LotjaGi1g1v0690300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCCAAACACCAACGCCACGCAAAACGGTTCCATCTTCTGCAACACTGTCAAAACCGCCGCCACTGATCCGTTAAG TTGGGGGGTCGCGGCGGAGTCCATGAAAGGGAGCCACCTCGACGAGGTCAAGCGCATGGTGGCGGAGTACCGCAAGGCGG TGGTCAAGCTTGGCGGAGAGACTCTCACAATAGCTCAGGTAGCTGCCATCGCCGCAAACCACCAAGGCGTGAGCGTTGAG CTTTGTGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGAACAACGGCACTGACAGTTA CGGTGTCACCACCGGCTTCGGCGCCACCTCCCACCGCAGAACCAAAAATGGCAATGCTCTGCAGCTAGAACTCATCAGGT TTTTGAATGCTGGAATATTTGGCAATGGTACTGAATCAACTCACACCTTGCCACAGCCTGCAACTAGAGCAGCAATGCTA GTGAGGATCAACACACTTCTCCAGGGATACTCAGGCATTAGGTTTGAAATCCTTGAAGCCATCACCAAGCTCATCAACAA CAACATCACCCCATGTTTACCACTTCGCGGTACCGTCACGGCTTCCGGTGATTTGGTCCCACTTTCTTACATTGCTGGTT TGCTAACCGGCCGGCCGAACTCCAAAGCTGTTGGACCTTCCGGTGAGGTGGTTAATGCCAAGGATGCTTTCCAATTGGCT GGCATTGACTCAGGGTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGCTCTTGTTAATGGTACTGCTGTTGGTTCAGGGTT AGCTTCTATTGTTCTATTTGATGCTAACATATTGGCTATACTGGCTGAAGTTCTATCGGCTATTTTCGCTGAAGTGATGC AAGGGAAACCTGAATTTACTGACCATTTGACACATAAGTTGAAGCACCACCCTGGCCAAATTGAGGCTGCTGCTATCATG GAGCACATTTTGGATGGAAGTTCCTACATGAAGGCAGCAAAGAAGTTGCACGAGGTGGATCCTTTGCAAAAGCCAAAGCA AGATCGATATGCACTTCGTACTTCTCCACAATGGCTCGGTCCTCTGATTGAAGTGATTCGATTCTCAACAAAGTCGATCG AGAGGGAGATCAACTCAGTGAACGACAACCCTTTGATCGATGTTTCCAGAAACAAGGCCTTGCACGGTGGTAATTTCCAA GGAACCCCTATTGGAGTTTCCATGGACAACACACGTCTGGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAGTTCAC TGAGCTGGTTGATGATCATTACAACAATGGCTTACCTTCAAATCTCACTGCTAGTAGGAATCCTAGCTTGGACTATGGTT TCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCGGTCACCACTCATGTCCAA AGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCAAGAAAAACCAACGAAGCCATTGAGATCCT TAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAATACT CAGTGAAGAGCACAGTAAGTCAAGTTGCAAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCTAGATTT TGTGAAAAAGATTTGCTGAAGGTGGTCGATAGAGAAACTCTATTTGCCTATATTGATGACCCATGCCTTGCTACTTACCC ATTGATGCAAAAACTGAGGCAAGTGCTTGTGGACCATGCGTTAGTAAATGGAGAATACGAGAAGGACTCAAAGACATCAA TCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCTAAGGAGGTCGAAAGCGCAAGGGCTGCATAT GAGAGTGGAAATCCAGCAATGCCAAACAAGATAAATGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGGAAGGAGCT GGGAACTGAGTTGCTAACCGGTGAAAAGACCAGGTCTCCGGGTGAGGAGTGTGACAAATTGTTCACAGCAATATGCCAGG GTAAAATTATTGATCCACTTCTGGAATGCCTCGGAGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA
Protein sequence (LotjaGi1g1v0690300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPNTNATQNGSIFCNTVKTAATDPLSWGVAAESMKGSHLDEVKRMVAEYRKAVVKLGGETLTIAQVAAIAANHQGVSVE LCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTESTHTLPQPATRAAML VRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAKDAFQLA GIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANILAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM EHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQ GTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQ SAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQVAKRTLTTGVNGELHPSRF CEKDLLKVVDRETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGEYEKDSKTSIFQKIATFEDELKSLLPKEVESARAAY ESGNPAMPNKINECRSYPLYKFVRKELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 715 | 712 | 0.0 | – | |
| PANTHER | 4 | 715 | 712 | 0.0 | ||
| Gene3D | 23 | 261 | 239 | 1.4E-95 | ||
| SUPERFAMILY | 24 | 715 | 692 | 4.08E-263 | ||
| TIGRFAM | 24 | 704 | 681 | 0.0 | ||
| CDD | 60 | 525 | 466 | 0.0 | ||
| Pfam | 62 | 529 | 468 | 4.5E-153 | ||
| ProSitePatterns | 197 | 213 | 17 | - | ||
| Gene3D | 262 | 704 | 443 | 1.2E-217 | – | |
| Gene3D | 528 | 642 | 115 | 1.2E-217 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0690300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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