Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0690300.6

Overview

Field Value
Gene ID LotjaGi1g1v0690300
Transcript ID LotjaGi1g1v0690300.6
Related isoforms 10
Lotus japonicus genome version Gifu v1.2
Description Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125810394..125817300) extracted from Lotus japonicus Gifu genome v1.2.

GGACCTATTCAGTTGAAGTTTCTCGAAACCGCACTTGTTTATTACCAATTTAGTTACCTATCTGCAATCTAGAGGATCGT TCCAATGGCCGAGAGTAACCAAGTTGACACCCTGTGACTCCAAGGTACAGAGACTTTATAGCATATATGCTACTTCTTCA TTGGATTTAATGTGTTCGTTGGATAGAAATATTTGAAACTTACCACATTTAGAGCTTCCTTTTTTTACTCTTCTGATGAA TAACTTCATTGTAGGTTTAGTTAGTTATAGCTTTTCTTTTACTGAGAAGAAAGATATTTGAGGTGTAAAATTTGTATCGG TGAGACTTAAAATGAAAATAATTTTGAAAGTTGAGGTGTAAGATATTTGAGGTGTCGTTTGCATCCCTTTGTTTCCATGC CTGTGCTCCTGACTCTTCTCACATGGTTCATGTACTGATTTCCACTCCTGATACTTGGGAAGCTCATCTTTCAGTTTTGT TGCTTGAGGACATTGTGGGGATCCTCAGTCACCTTCCCTTGCTTCATTCTCTGTTTAGAAAAGAAACATGTCTTAGTGTT GGTTCAAAGAAGAATGGTGAATAAAGACAAAATGAGTTGCAGTTGCCATAAAATTGGTTAAATAAAAAACTCCTTTTTGT TGGAACTTTTTTCTTTATTGGAAATTGTGAAACATTGATCCTGAATATGAAATAGTTTTTTTTTTTCCCTTATAAAGTGG CAATATTATGTAAGTTTGCCTAAAATTTATGCAAGATCATAGTTCTAAATTTATGTTAGTTGTCCTCTTTTGACCTGTAG TGCAGAGGAGCATAATTGGAATAGGGGGCTCTTGGGCAGAGTTTGTTGATTATTTTGCAACTTCCCTCAAGTCAGAAGAT CTCAAGCTGGTAGAGGTGAATTCAAACTCATGGTAGCTAATACTCTTATTACTCCTACTCTTCGCTCCTTCTTTTGAAAC TTTTAATAGTAAAAGTATTACAGGATATGTTATTTATGAAGACATTTAATTGCTAAAGTGTGTAACCATAGCCTTATGTA TTTCTTATTTTCAAACATACACTCAGTTCTATCTAATCCATGAGACTCTTTGGGCTGAGGAAATTGATGATTTGTGACCT TGGCATTGTTCATGAGACTCATAAAGTGATCTCTTTTTAATTTAACACGAAACTGGTTTGAAATGTTTAATTTGAAGATG ATTGGTGCTCTGAACTCCCTTCTTTTTAAATTATTTAATTATTTAAGAGTATTTTATCCTGATATAAGTGAGCATTGTAA AAATTCATGGTATTGAACCTGATACACAGTTCATATTCTCTTTATGAGTTGCAGGATATCATTTATGTGCTTTCATTATT TAATTTTGATTTTATGTTTGCTGTTATTCATACCTTCAATGTAACAGCTTCATATGTTTTGGTTCTTTCTCTTCCATTAT AATTTTTGTTTTATGATTTATTATTTGTCCAGAGTTTCAGGGTATATGTGTATATGTATCTTATTTTCAGCATAGTTTGA TTACAGTTCTTATTGCTGAAGCGATCTAGGGGTTTAAGACTTCTAGTAAATAATTTGTGGCACTTAATACCAGCATTTAG ACAAAAGCCGCCACAAAACAACTTGTGGAATCCGTGGTTCTGGCATTCTAGTGAAGTGCCAGTAATAAACTCTGTGGCCC TCAGAAATGCCACAATTGTTATTTTCAGCTGCCACTATTTGTAGTGCAACACATAATTTAGTACTAGAACATGGCATCTT ACTGACATCATATTTGTTTATTTGATATAAAATTAATAAAGTTATACTATTTTCTCTTGTTCATTTGTTATTCTATTCTA AGTCTAATTAACTGTTTTATTTGACGTCTGGAAACATGTTTAACAGACTTCCTGTAGATTGTGAAAGTAGAAACCCATGA AAGAAAGCCACAATTACGATGAGCAGAAAGGTACACATATATCCATGAGGTCTTCAAACGTGCTCACATCAAGAAGAATG ACCAGACATGGGTCAGTAAAAGGTTTGAATATACTTGGGTTGGTATAATTTAGTATTCACTAGATTACTTCTAATTTGTT ATATGAATAGTAATATTAATACTATTTGAACACACTAAGTTTGAGGAGCAAATGATTCAATCCTCATATGATTCCCATAG GGGGGGCGTCAACAGAGGTTGACTCATCCACTGATGTGTAATTATCGATTGAGAAACAAGTGGAAAATGCTAGGGACGAA TATATGACACATTTGATATGTCTGCGCGTTACAAACCTGGGGTTGCTTCCCCGATACAAGAGCCATCATGACCTTCTCAC CCGGGGTCTCAGGATTCTCAAACGAACACTAAGTTTCAGGAGATGATGCTCAAGGTGCACATGGTGCTACAGGAGAATGT TGTGCTCCGACAGAAGCTGAACCAGCAAGAGACCCAAACAGCAGAGCATCACCAGTGGACAACTTCACCGTATGCAGCCT TTGTTGTGGAGGTTGCAGAGTTGAGGGCTTAACAAGATGGTGGTGCTCATGCTGCTGCTCCTCAATTTCCTACTTACGAA GAGGAGGAGGAGGTAATTATCATTAGTTAAAAATAACAAGTTTATCTATGGTCTAAGCCATCGGTAATATGGTGGTCAAA GCCGTCGGTATTGTATCGACGATTTTGGTTGTAGGAAGTGTATCGAAGGGCACAACTGTTGGTAACTTTTGGAAGCTTTC GGTAAGTTACATATGCCTTTCTAAAAAACCGTCAGTAAAAAGTTATCGGTGAGCTCTATACCTACAGAAACAGAGTGGTC GATAGACCATCGGAAATATTCAATTACTGACAGGTTTTTCCCTTACCAATGGCTTATGGTTGTCGGTAATCAACAATTTT CTTGTAGTGTCTTGGTTCCTTGAGATTTTTTTTGGGGCTGGACATTTCTTGATCTAAGACAGATCATTCTTAATAAGAGG AAGTATACACTTGAACTCCTTAAAGATTCAAGCCAGTTTCCACACCTTGTACTTCATATGCTAGATTGCATACTAATCAA GGAAAGCCTTATTGTCCATCTGCTTATCGAAGATTAGTTGGAAGGTTTCTCTATTACACAACTAACTACACGGCCTGACA TTTGTTATGTTGCCAGCAGGTAAGTCAATTTGTTCATGATCCTAGAGAAGCACATTTTGATGTTGCCATAAGAGTTCTCC TACAAAGGGCATTTTCTTCTCAACCTCCAGGATCTCCACATTTTAGCTTCTTTGTACTGATTCTTGCAGGTCTAATTCAT TTACTTCGAGTGCGTACTACAGCTCAATTAGCACATGCTTTCACAAAACCACTGCATTCTAATTCTATTCATGAGTTCCT GTCCAAGTTGGGCCTTCAGGACCTTCATAGTCCAAGTCCAACTTGGGGGGAATATTAGAGTGTTAGTGGTACTGTTAGCT ATTTTTGACCAAAAAAAAAAACTCTGTTAGCTATTAGTTGTTGAAGAGTTCGTTAGGGGAAATGTAAGAAATAAAAAGTC CAAACGTGAGTCTTTTTTTAAATAAAAAATGAGTGTGAACTTCTAGTCCTAAAAATACAGAATCAGGTGTGTACTTAAAA ATACAGAATGGTGACATTATAAATAGAGATAAATGTAAAATCATATGTAATATGTTAATTGTGGATCTCATGTAAGCAGC TGGTATAGCTTGACTGCGTCAAACATACTAATGGGGTAGCACATCAAGTCAATGTTAGTCCAAAATATATATTAAAAAAA GGACAGTATTTCTGTCTAAACTTGACCCCAATTGCGATATAGGGTCATGCACATGCTTTAGTAGCTTTTAAGTTGACTGA ATTAGCCAACCATGAGATTAGAGTTATTACTAATATAGTATTAGATAAATTGATTTGATACATGTTGATTGAAAAAATTA TAAAAAAAAAAGAATGCAAGCCGTGACAATTATCGGTGTGATCGATGTTGTTGAGAAGGAGACTTGACTAACGATATGTG TTTCCCTCGTTACTTCCTTCTAACAACCTCCTCATTTCCTGAACAATAAACAAACTCACATCACTTTCCTCTCTCTATAA ATGGCAATGCCCACTCACTCTTCCCTTCACCTCTCATAAAATCTACAATCCCAAATTCATACTTCTGCTACTACATTCAT CACAGCAAGCTCTTAAGTCTTAACCAAACACTTATATTTCACTTCCATTTTTTTGTTTCCAGATCATATCTAATCAGCTT GCATTATTTATTAATTAAGATAAAGATGGCACCAAACACAAACCAGACACAAAACGGTTCCTTCATCTGCACTGCTGCTA ATGGTACTGCTACTGCTACTGATCCCTTAAGTTGGGGTGTGGCAGCGGAGTCAATGAAGGGGAGCCACCTGAACGAGGTG AAGCGCATGGTGGCGGAGTACCGGAAGCCGGTGGTCAAGCTTGGCGGAGAGACTCTGACAATAGCTCAGGTAGCTGCCAT CGCCGCAAACGAACAAGGCGTGAGCGTTGAGCTGTGTGAATCAGCTAGAGCTGGAGTTAAGGCGAGCAGTGACTGGGTGA TGAACAGCATGAACAACGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGCGCCACCTCCCACCGCAGAACCAAAAAT GGCAATGCTTTGCAGCTAGAACTCATCAGGTACTATACTATACTAACTCAATTCCACACTCATCATAACTAACTACAAGC TGTTTATATGTTGTTGATTAATCATCATATTTACAATTGTATTGTATAAAAGTTGTTGATGTTTATATATTCTTGTTCTT CAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACTGAGTCAACTCACACCCTGCCACAGCCTGCAACTAGAGCAGCCA TGCTAGTGAGGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGATTTGAAATCCTTGAAGCAATCACCAAGCTCATC AACAACAACATCACCCCATGTTTACCACTTCGCGGTACCGTCACGGCCTCTGGTGATTTAGTCCCTCTTTCTTACATTGC CGGCTTGCTTACCGGCCGACCGAACTCCAAAGCTGTTGGACCATCCGGCGAGGTTCTTAATGCTAAGAATGCTTTCCAAT TGGCTGGCATAGACTCTGGTTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGTACTGCTGTTGGTTCT GGGTTAGCTTCGATTGTTCTATTTGATGCGAACGTATTGGCTATACTGGCTGAAGTTCTATCAGCTATTTTCGCCGAAGT GATGCAAGGGAAACCTGAATTCACTGACCACTTGACTCATAAGCTGAAGCATCACCCTGGACAAATTGAGGCTGCTGCTA TCATGGAGCACATTTTGGATGGGAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATCCTTTGCAAAAGCCA AAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGTCCTCTGATTGAAGTGATTCGGTTCTCAACAAAGTC GATCGAGAGAGAGATTAATTCTGTGAACGACAACCCTTTGATTGATGTTTCCAGAAACAAAGCCTTGCATGGTGGTAATT TCCAAGGAACCCCAATCGGAGTTTCTATGGACAACACACGCCTGGCTCTTGCAGCGATTGGCAAACTCATGTTTGCTCAA TTCACTGAGCTTGTGGATGATCATTACAACAACGGGTTGCCTTCAAATCTCACAGCAAGTAGAAATCCCAGCTTGGATTA TGGTCTAAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCAGTCACAACTCATG TCCAAAGTGCTGAGCAACATAACCAAGATGTGAATTCCTTGGGTTTGATTTCTTCTAGAAAAACAAATGAAGCCATTGAA ATCCTTAAGCTCATGTCTTCCACATTCTTGATCGCACTTTGCCAAGCAATTGACTTAAGGCATTTAGAGGAGAACTTGAA GTACTCGGTGAAGAGCACTGTAAGTCAAGTTGTGAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCTA GATTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAACTCTATTTTCCTATATTGATGATCCTTGCAGCGCTACA TACCCGTTGATGCAAAAACTAAGGCAAGTGCTTGTCGATCACGCACTAGTAAACGGAGAAAACGAGAAGGACTCGAAGAC ATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTG CATATGAGAGTGGAAATCCAACAATTCCAAACAAGATCAATGAATGCAGATCTTACCCGCTATACAAGTTTGTGAGAGAG GAGTTGGGAACCGAGTTGCTAACCGGTGAAAAGACCAGATCACCAGGCGAGGAGTGTGACAAGTTGTTCACAGCAATATG CCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAACTTACAA GTTATGTTTAGGAAATGCATTCTTTGTATTTAAGCAAATGCAATGTTAGTCATTTGATTTATCAAGCCTTGGGCAAAATA ATATGGAAATCTTCATCTTAGTTTCCTTGATGTCAAGGAGGAACTTGTAATTGAATATTGCAATAGAAGTTTTAGTTATT TTTCAAAGAATACAAAATACAAAAATTAAGTCATAATTTATCATAACCAGAGCATTTACTTTGATATTAAGGTCTCTCTT GGATTGTAGGCTGTCAAGCGACTCAAGTAAATATGAATAATTTTGTAATAGAGATGACTAGATTTTAGCCACCTATAAGT TGTAATCTATCACCTCTGTGTAGTAGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0690300.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCACCAAACACAAACCAGACACAAAACGGTTCCTTCATCTGCACTGCTGCTAATGGTACTGCTACTGCTACTGATCC CTTAAGTTGGGGTGTGGCAGCGGAGTCAATGAAGGGGAGCCACCTGAACGAGGTGAAGCGCATGGTGGCGGAGTACCGGA AGCCGGTGGTCAAGCTTGGCGGAGAGACTCTGACAATAGCTCAGGTAGCTGCCATCGCCGCAAACGAACAAGGCGTGAGC GTTGAGCTGTGTGAATCAGCTAGAGCTGGAGTTAAGGCGAGCAGTGACTGGGTGATGAACAGCATGAACAACGGCACTGA CAGTTACGGTGTCACCACCGGCTTCGGCGCCACCTCCCACCGCAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCA TCAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACTGAGTCAACTCACACCCTGCCACAGCCTGCAACTAGAGCAGCC ATGCTAGTGAGGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGATTTGAAATCCTTGAAGCAATCACCAAGCTCAT CAACAACAACATCACCCCATGTTTACCACTTCGCGGTACCGTCACGGCCTCTGGTGATTTAGTCCCTCTTTCTTACATTG CCGGCTTGCTTACCGGCCGACCGAACTCCAAAGCTGTTGGACCATCCGGCGAGGTTCTTAATGCTAAGAATGCTTTCCAA TTGGCTGGCATAGACTCTGGTTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGTACTGCTGTTGGTTC TGGGTTAGCTTCGATTGTTCTATTTGATGCGAACGTATTGGCTATACTGGCTGAAGTTCTATCAGCTATTTTCGCCGAAG TGATGCAAGGGAAACCTGAATTCACTGACCACTTGACTCATAAGCTGAAGCATCACCCTGGACAAATTGAGGCTGCTGCT ATCATGGAGCACATTTTGGATGGGAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATCCTTTGCAAAAGCC AAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGTCCTCTGATTGAAGTGATTCGGTTCTCAACAAAGT CGATCGAGAGAGAGATTAATTCTGTGAACGACAACCCTTTGATTGATGTTTCCAGAAACAAAGCCTTGCATGGTGGTAAT TTCCAAGGAACCCCAATCGGAGTTTCTATGGACAACACACGCCTGGCTCTTGCAGCGATTGGCAAACTCATGTTTGCTCA ATTCACTGAGCTTGTGGATGATCATTACAACAACGGGTTGCCTTCAAATCTCACAGCAAGTAGAAATCCCAGCTTGGATT ATGGTCTAAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCAGTCACAACTCAT GTCCAAAGTGCTGAGCAACATAACCAAGATGTGAATTCCTTGGGTTTGATTTCTTCTAGAAAAACAAATGAAGCCATTGA AATCCTTAAGCTCATGTCTTCCACATTCTTGATCGCACTTTGCCAAGCAATTGACTTAAGGCATTTAGAGGAGAACTTGA AGTACTCGGTGAAGAGCACTGTAAGTCAAGTTGTGAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCT AGATTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAACTCTATTTTCCTATATTGATGATCCTTGCAGCGCTAC ATACCCGTTGATGCAAAAACTAAGGCAAGTGCTTGTCGATCACGCACTAGTAAACGGAGAAAACGAGAAGGACTCGAAGA CATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCT GCATATGAGAGTGGAAATCCAACAATTCCAAACAAGATCAATGAATGCAGATCTTACCCGCTATACAAGTTTGTGAGAGA GGAGTTGGGAACCGAGTTGCTAACCGGTGAAAAGACCAGATCACCAGGCGAGGAGTGTGACAAGTTGTTCACAGCAATAT GCCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0690300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPNTNQTQNGSFICTAANGTATATDPLSWGVAAESMKGSHLNEVKRMVAEYRKPVVKLGGETLTIAQVAAIAANEQGVS VELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTESTHTLPQPATRAA MLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKNAFQ LAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA IMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGN FQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTH VQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQVVKRTLTTGVNGELHPS RFCEKDLLKVVDRETLFSYIDDPCSATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARA AYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10362:SF45
11 717 707 0.0 –
PANTHER
PTHR10362
11 717 707 0.0
IPR001106
Gene3D
G3DSA:1.10.275.10
25 263 239 3.6E-95
IPR024083
SUPERFAMILY
SSF48557
26 717 692 8.63E-262
IPR008948
TIGRFAM
TIGR01226
26 706 681 0.0
IPR005922
CDD
cd00332
62 527 466 0.0
IPR001106
Pfam
PF00221
64 532 469 1.9E-152
IPR001106
ProSitePatterns
PS00488
199 215 17 -
IPR022313
Gene3D
G3DSA:1.20.200.10
264 706 443 1.9E-218 –
Gene3D
G3DSA:1.10.274.20
530 644 115 1.9E-218
IPR023144

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006559
Biological process L-phenylalanine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
Subterm of
GO:0016841
Molecular function Ammonia-lyase activity Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0690300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…