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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0690300 |
| Transcript ID | LotjaGi1g1v0690300.9 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125822559..125828613) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACATGCTTTCAATAAGACTCATTGGAGTCACGTCATTGCCCATTTTGACCTAATTTTGTGACTGTTGCATTTACTG AATTCATAGACAAAACCATGAAATTATTAGGTACTACTAATATATTAGATAAATTGATGTGTGTGTGAGTGATTGTCATG TTGATTGATAAAACTATAAAAATAAAAAAAAACCAAGCCATCAAAAGATCAAGTATAGTGTGATGTAGAGGCTTTGACTT GACCAACGTATGCAGTTGGACTACCAAGACCAAGTTCCACTTTCTTCCCTCGTTGCTTCCTCCCTTCCTCCTAGTCGCAC CAACAACCCCCATTCTGTTAGATCAGCCTCTTAGTCTCACCTACCAAGCACACACATTAGAATTTGGAAAAAGTCCTTTA AAACAAAAAGACTGACAAACAATAAACAAACCAATCCACCTACTCTTTCTATATAAATACCCACTCACTCTTCCCTTTAC CTCTCAGGAAACCCACAACTCACCAAACTAACATTTCCACATTCAGCTCACCAATCTCTTCCTCATTTTCCCTTCTCATA ACTCTAGCAAACTTTGCCCATTTTTCTTAAGATAATCAATCTTGTAAGTGAGAGATCATATATACTAAGATGGCACCAAC CACCAACAGCAACCACGAGAGCCTAAATAGTTCCATCTTCTGCACTGCTGCTAAAGCAGGCAGTGATCCCTTGAGTTGGG GTGTAGCAGCAGATTCGATGAAGGGGAGCCACCTGGATGAGGTCAAGCGCATGGTGGCTGAGTACAGGAAGCCTGTGGTC AAGCTAGGCGGGGAAACTCTGACAATAGCTCAGGTAGCTGCCATTGCAGCAAACGACCAAGGCGTAAGCGTTGAGCTGTG CGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGAACAATGGCACTGACAGTTACGGTG TCACCACCGGCTTCGGCGCCACCTCCCACCGTAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCATCAGGTACTAT ACTATACTAACTCAATTCCACACTCATCATAACTAACTACTAGCTGTTTAATTAATCCATTCCCAACTCCTAATTAATTC ATATCATATTTACAATTACATTCATTGTATCAAAGTTGTTGATGTATATATCTTCTTGTTCTTCAGGTTTTTGAATGCTG GAATATTTGGCAATGGAACTGAGACAAGTCACACACTACCACAGCCTGCAACTAGAGCAGCCATGCTAGTGAGGATCAAC ACACTTCTCCAGGGATACTCAGGCATTAGGTTTGAAATCCTTGAAGCCATCACCAAGCTCATCAACAACAACATCACCCC ATGTTTACCACTTCGTGGGACTGTCACGGCTTCTGGTGATTTGGTCCCTCTTTCTTACATTGCCGGTTTGCTTACTGGGA GACAAAACTCCAAAGCTGTTGGACCATCCGGCGAGGTGGTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATAGACACA GGGTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGCCCTTGTGAATGGTACTGCTGTTGGATCAGGGTTAGCTTCTATTGT TCTATTTGATGCTAACGTATTGGCTATTCTGGCTGAAGTTCTATCAGCTATTTTCGCCGAAGTGATGCAAGGGAAACCTG AATTCACTGACCATTTGACACATAAGTTGAAGCACCACCCTGGCCAAATTGAGGCGGCAGCTATCATGGAACACATTTTG GATGGAAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATCCTTTGCAAAAGCCAAAACAAGATCGATATGC ACTTAGAACTTCACCTCAGTGGCTTGGCCCTCTGATTGAAGTGATTCGATTCTCAACAAAGTCGATCGAAAGAGAGATTA ACTCCGTGAATGACAACCCTTTGATTGATGTTTCCAGAAACAAGGCCTTGCACGGTGGTAATTTTCAAGGAACCCCTATT GGAGTGTCCATGGACAACACACGTCTGGCTCTTGCAGCAATTGGAAAACTCATGTTTGCTCAGTTCACTGAGCTTGTGGA TGATCATTACAACAATGGCTTACCTTCAAATCTCACTGCTAGTAGAAATCCCAGCTTGGATTATGGTCTAAAGGGAGCTG AAATTGCCATGGCTTCTTATTGCTCTGAACTCCAATACCTTGCAAATCCTGTCACAACCCATGTCCAAAGTGCTGAGCAA CACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACCAATGAGGCTATTGAGATCCTTAAGCTCATGTC TTCCACATTCTTGATTGCTCTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAACACTCGGTGAAGAGCA CTGTAAGTCAAGTTGCCAAGAGGACTCTTACCACAAGTGTCAATGGAGAACTCCATCCTTCCAGATTTTGTGAAAAAGAT TTGCTGAAGGTGGTTGATAGGGAAACTCTATTTGCCTATATTGATGATCCATGCAGTGCTACATACCCATTGATGCAAAA ACTAAGGCAAGTTCTTGTGGATCATGCATTAGTAAATGGAGAAAACGAGAAGAACTCGAAGACATCAATCTTTCAAAAGA TTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGAAAT CCAACAATTCCAAACAAGATCAATGAATGCAGATCTTACCCGCTGTACAAGTTTGTGAGAGAGGAGTTGGGAACCGAGTT GCTAACCGGTGAAAAGACCAGATCACCAGGCGAGGAGTGTGACAAGTTGTTCACAGCAATATGCCAGGGTAAAATTATTG ATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAACTTACAAGTTATGTTTAGGAAATG TATTCTCTGTATTTATGCAAATGCAATGTTAGTCATTTGATTTATCAAGCCTTGGGCAAAATAATATGGAAATCTTCATC TTAGTTTCCTTGATGTCAAGGAGGAACTTGTAATTGAATATTGCAATAGAAGTTTTAGTTATTTTTCAAATACAAAATTA AGTCATAAATGATTATAACCAGAGCATTTACTTTGATATTTAGGTCTCTCTTGGATTGTAGGCGGTCAAAGGACTCAAGT AAATATATAACCTACTGGGGTATGATTTTGTAATAGAGATGACAAAATGAGATGTCAGATGACTAGAGTTTATTCACTTA TAAGTTGTGATCTTGTGTTCACATATTTCCTGGTTATGACAAATCTTTCTTACTATAGCTGTTTGGATTTTAATTGCTCA GGAATTAAATTTTTATTATTTATTTTATTTGACATTTATGAATCGCTGTCAGTGCAATTCGTGTCCCTGAGACATTTTGA GCCTTTTATGTTATTTGAGGTGTGTTTTATTTTTAAGTGGTGTTTGCCTACCTGGTGTTTGATCTAATTATATGTTCCTT ACTGTTGGAAGGGCCTGTTCAAGTATTGATCTGATTGCTCACAGATTAAAAAATTTGCTCAAGTCAGATAAGAGAAGCCC ACCCTGGACCTGTTTCATGCTCAGAGGGGAAATAAAACTTTTGGCAAGGTAATCTGTCACCTCTGCATAGTTGGGGCTTG ATTTGGATTCAGAGAGCCTGGAACTGCAAGAAAGAGTATGGGGATTCATTTGTTTCATTTGCTTACTTGGTTCTTGGTTT TACCCAAGATCAGCGATTTTGAAGCAGTTGTTTAGATGATATTTTAAAATATCCCAGCAGGCTCTAAAATCTGCAATAGA GTCCATTAGGGGAGATTAGTCAGTTATTTACCAAGGTAGTGGCATAATCCATTTGTCTTAATATATGCTATAGATGTGTG TTGTCTTCTTTTATCTTACCTCTTGTCTTAGGGGAGGGGTAGCAAGATTGTTAATTTTGTCCTAATTGTGAATCAGTTAT ACATGTTGTCCTTGATTTTTTTCCCACATCTTTATGTTGCATATGACTGCCAGCATCTTATATTGCCCAAGCATCATCTT TATTTTTGTATGAACTTTGTTTAGTACCAAAATTGATTAACCTTCAGTTGTTTTCGTTTTGCTAAATTTGTGATTATCTT GCAGTGTTTATCCTGTGTCAATTATAACTACAAACTGCACTGCAGCTTACTGCTTGTATATATCTGTCAAATTTTGAAAT TGTTGATATTGATATAGTTTGGTGCGTTTGGTTCTTGATCATTTTTAAGCATGAGAGTCATGGTTTTTGTTAATAACTGA GCATCAAACTACACTTAGTTCCTCCTGATTCATTCACTAATAAGATTGCTACATTCATATGCATTCTAGAAATTGTTTTC ATCACAGTTAATATATGTTAAATAACTATTATACTATTTCATGCATCCTTCGCACTGCTATGCTTTCTTGTGGTGATTAG AGAAATGTGTAGTATTTTGAGTAATTAAGTATTTCATCACATGTTCTCGACCAATTATAACCTTGCTGAGTAATAATTCC ACTATGCTGCAGGCCACTGCCAATAGTTCCTCTTAACTCTAAAAGAGTTTCTGTCAAGTTTGACTTCTTCAAGATTGCTT ATTTGGTAGGTGATGTTCTGCTCCTAAATACTTTTTCAGTTTTCACATTTAGTCTATTTGATTTTTGCTGATAGACAGAC TAGTTTACTTCATGTAAGTTGGGAAATTTAAGGGAAAAAAAGAACCGTCCTCTTAAAACTGTTGGCTAGATTGTTTTTTG CCCTTGTTCTCCAGTTCTTCATGGCGAGGAGATATGTAGTATTTTTCCCTTGTTTTTTGCTATGTTTGACATTGATTTCT GCCATTTGGTCAGAGAGAAAGTACCAGCTTTCTGTAAATGCTTTTCCCTTTGTCTTATTTCCAAGGTTTTCTTTATCAGA TATGCACTTAGAACTTGGAAGAATTACTGAATAATTTGTAATCAGTATTTTCTTCCTCTTTCTTCTAGTTTTATCACAAA GAAGAAGAATAAGAAGTAAACAGATAATAGTATTGTATTTGCATGAGCCAAAACAGCACTCAGTTCTTGGCTAGATGTAC TAGATACCCCATGCATGCACCTGAACACATATTTTGTACATCTTATATGTGCATAAGCCAAACGGTTACTATTTTTGCTA TATTTCCTTGTAAACACCTTGTCTTAAGACCTATGACCATTGGGACAAGTCACCTTCTGAAGCTGGGGTTTGAAGCCAAG TATGTGTTGAGATTTGAGGCTAACAATGATCATACTTCATAGTCTTCTTGTCTGTGAATTCAAGTACCCTGCAGGTACAA TATAATTTGCATGCTTTTAATTATTTTATCCACTAATCTATCAATTTTGAAACTTCTGACATGTTATCATAGGTTTGCTA CTGTTACATCAGGAGCAGCTTCAGGGCAACCATTTTAGTATGAGCTCTATGTCTGTCAATTTTCTACTAAGTGTTTATTG TTAGAATGATGGGTAGCTAGGGTGGACTGTTTTCACAGCTCTATTTGAATGTGTAATTTTTTTTCTGCAGATTTAAGTTT AAATTCTTTTCTGCAGAATTAGATATGAAAGTGTTCAACGGATTCGCTACGGCATTTTCCTAAGGATTTAGCTATTATTG TTTCGTGCGGATTTACCTTTGAATCTTTTTCTCATGGATTTACCTTTCTCTGCAGATTTTGCTATGAACTTATCATATGA TTTACTTACAAACCTTCCTTGCGGATTTACCTTCCATTCCTATAGATTTAGCTGCTAAGTAAGTAAATTGCTCACGGATG TATTATGTGATGTATAATTTAATGTGGTAAGGTGTGAGAAATAAAGAAAAAAAAATTAGGTATTTAAGTGATGTCTAATG TACTATTATTGGTTTATATAATAATGCAAAAACTTGACCTCAATTACGATGGTTGATGCACATGCTCTAGCTTTTACGTT GACTGATCAATTAACCAAACCACATGAGACTTATTAATATGTCACCGAATGTTAG
CDS sequence (LotjaGi1g1v0690300.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAACCACCAACAGCAACCACGAGAGCCTAAATAGTTCCATCTTCTGCACTGCTGCTAAAGCAGGCAGTGATCC CTTGAGTTGGGGTGTAGCAGCAGATTCGATGAAGGGGAGCCACCTGGATGAGGTCAAGCGCATGGTGGCTGAGTACAGGA AGCCTGTGGTCAAGCTAGGCGGGGAAACTCTGACAATAGCTCAGGTAGCTGCCATTGCAGCAAACGACCAAGGCGTAAGC GTTGAGCTGTGCGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGAACAATGGCACTGA CAGTTACGGTGTCACCACCGGCTTCGGCGCCACCTCCCACCGTAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCA TCAGGTTTTTGAATGCTGGAATATTTGGCAATGGAACTGAGACAAGTCACACACTACCACAGCCTGCAACTAGAGCAGCC ATGCTAGTGAGGATCAACACACTTCTCCAGGGATACTCAGGCATTAGGTTTGAAATCCTTGAAGCCATCACCAAGCTCAT CAACAACAACATCACCCCATGTTTACCACTTCGTGGGACTGTCACGGCTTCTGGTGATTTGGTCCCTCTTTCTTACATTG CCGGTTTGCTTACTGGGAGACAAAACTCCAAAGCTGTTGGACCATCCGGCGAGGTGGTTAATGCCAAGGAAGCTTTCCAA TTGGCTGGCATAGACACAGGGTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGCCCTTGTGAATGGTACTGCTGTTGGATC AGGGTTAGCTTCTATTGTTCTATTTGATGCTAACGTATTGGCTATTCTGGCTGAAGTTCTATCAGCTATTTTCGCCGAAG TGATGCAAGGGAAACCTGAATTCACTGACCATTTGACACATAAGTTGAAGCACCACCCTGGCCAAATTGAGGCGGCAGCT ATCATGGAACACATTTTGGATGGAAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATCCTTTGCAAAAGCC AAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGCCCTCTGATTGAAGTGATTCGATTCTCAACAAAGT CGATCGAAAGAGAGATTAACTCCGTGAATGACAACCCTTTGATTGATGTTTCCAGAAACAAGGCCTTGCACGGTGGTAAT TTTCAAGGAACCCCTATTGGAGTGTCCATGGACAACACACGTCTGGCTCTTGCAGCAATTGGAAAACTCATGTTTGCTCA GTTCACTGAGCTTGTGGATGATCATTACAACAATGGCTTACCTTCAAATCTCACTGCTAGTAGAAATCCCAGCTTGGATT ATGGTCTAAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCTGAACTCCAATACCTTGCAAATCCTGTCACAACCCAT GTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACCAATGAGGCTATTGA GATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCTCTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGA AACACTCGGTGAAGAGCACTGTAAGTCAAGTTGCCAAGAGGACTCTTACCACAAGTGTCAATGGAGAACTCCATCCTTCC AGATTTTGTGAAAAAGATTTGCTGAAGGTGGTTGATAGGGAAACTCTATTTGCCTATATTGATGATCCATGCAGTGCTAC ATACCCATTGATGCAAAAACTAAGGCAAGTTCTTGTGGATCATGCATTAGTAAATGGAGAAAACGAGAAGAACTCGAAGA CATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCT GCATATGAGAGTGGAAATCCAACAATTCCAAACAAGATCAATGAATGCAGATCTTACCCGCTGTACAAGTTTGTGAGAGA GGAGTTGGGAACCGAGTTGCTAACCGGTGAAAAGACCAGATCACCAGGCGAGGAGTGTGACAAGTTGTTCACAGCAATAT GCCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA
Protein sequence (LotjaGi1g1v0690300.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTTNSNHESLNSSIFCTAAKAGSDPLSWGVAADSMKGSHLDEVKRMVAEYRKPVVKLGGETLTIAQVAAIAANDQGVS VELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTETSHTLPQPATRAA MLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGEVVNAKEAFQ LAGIDTGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA IMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGN FQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTH VQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKHSVKSTVSQVAKRTLTTSVNGELHPS RFCEKDLLKVVDRETLFAYIDDPCSATYPLMQKLRQVLVDHALVNGENEKNSKTSIFQKIATFEDELKSLLPKEVESARA AYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 717 | 706 | 0.0 | – | |
| PANTHER | 12 | 717 | 706 | 0.0 | ||
| Gene3D | 25 | 263 | 239 | 1.2E-95 | ||
| SUPERFAMILY | 26 | 717 | 692 | 6.36E-263 | ||
| TIGRFAM | 26 | 706 | 681 | 0.0 | ||
| CDD | 62 | 527 | 466 | 0.0 | ||
| Pfam | 64 | 535 | 472 | 8.6E-153 | ||
| ProSitePatterns | 199 | 215 | 17 | - | ||
| Gene3D | 264 | 706 | 443 | 5.8E-219 | – | |
| Gene3D | 530 | 644 | 115 | 5.8E-219 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0690300.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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