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LotjaGi1g1v0690800.2

Overview

Field Value
Gene ID LotjaGi1g1v0690800
Transcript ID LotjaGi1g1v0690800.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Cytokinin riboside 5'-monophosphate phosphoribohydrolase; TAIR: AT2G37210.1 lysine decarboxylase family protein; Swiss-Prot: sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3; TrEMBL-Plants: tr|A0A0B2NYX4|A0A0B2NYX4_GLYSO Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Found in the gene: LotjaGi1g1v0690800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125891999..125895712) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGAAACATGGTGAGATAAGGCACTCAAAGTTCAAAAGGATTTGTGTCTTCTGTGGGAGTAGCCCTGGCAAGAAGCC TAGTTATCAAGATGCTGCCATTGAGCTTGGAAATGAACTGGTTTGTATTGTATATATAAACTTTTCATGCTTTTCTCTGT TTCCTACATTATGAACACCCATTTTTTTCAGCTTATTCAGTGTTTGTTTGCCTCAAATGTTTTGTTTTTGTGTTTATGCT TCTTGAGCTGAATGAGATAAGATCAGAAGGAAATGGTTAAACTTTGTGATGTGACATGTTTGATTATGCTGCTTCCATTG TGAAATTTTGTTCATACACATGTTCATGAGTTTGACTCTTTGCAAATCCAAATTCATGTTGGTTAATTCCTCATTGAAAA AAATGCTGTTTATTGTTGCTGAGAGATTGAAAGTCTCCATTTTTGTTTTCCTCTTGAGCTTTTTAGCTCAGTAGCTCAGA ACAGAACAGTGTACGGACTCACAAGTGTCTTAAGCTGAGTGAGCGTTGAGGAATCAATTCTTTTTGGTCTTTGCTTTCCA AACAGTTAAAAATGGATGCACTGTCATGTGATTAATTGTTATTTTTTTGGCATCATACACAACACAGTACACAATCATAG CCACCATTGTTTGCTTTTGGTTATTTAGTATTTCTAAGCTGAGTAATTAAGTGTGTGTTTTTTTTAATGGTCTGTGAAGG TTTCAAGGAACATTGATCTGGTGTATGGTGGGGGAAGCATTGGCCTCATGGGATTGGTTTCACAAGCTGTTCATGATGGC GGTCGGCATGTCATTGGGTAAGTGCATGTTCGAATACAAGGTATAAAAGCACATTAAGCCAAAATCATGTGGATAGAAAC AACTTTTCCTAAAAAAAAATTTTATGTCCAACATGATTTTAGCTTTAGGGTGATTTTATTGACTCATTCTCTTTTTTATT TGACCCTTTTTCATCCAATTTCTCTTCCTCTTTTTCCCCCCAAAGGTGTTGTTGTTGGGGAAAAGGGAAGAACATGAGAA CAAGAACTCATGATAGTCAATGAGTAATCCACAGTGCTTTTTGTTGGCCTCTTTCACCATGAACACTCACTGTAGTCTTT GTCATTTTATTGTCCCTTGTTGCAGAGTTATTCCCAAGACGCTCATGCCTCGAGAGGTATGTCTGTTTCAGCCAGGAGGA AAAGCTTAACACCTTTTCTTCCTTCTCCTAATAAAGTATTTGCTATTGCTATTTGTCTTTCTTATTTTATTCTTAGGAAG AACTTTTTATGAACAGCTTCTAAAGTGTCAAAATTGATTCTGAGAAAATAAAAACTGCTATCTTAGAATTTTACAGTTTT TTGTTGTTTGTTAAAACTAGTTTCTTTCTTTTGGGCCAGTGCTTAACTTGTTACTCTAGGAATATACCACTTGGATACCT GGCACTGTTGTCATATTCTGTTTTTTTTCTTTTGCAAATAAACTATTTTTTTGTTAAAAAAGTGATTTTTTTTCTCATTT GATTTGGTATCCTCTTGCAGCTAACTGGTGAAACAGTGGGAGAAGTGAAGGCTGTGGCAAATATGCACCAGAGGAAAGCT GAGATGGCTAAGCATTCAGATGCCTTTATTGCCTTACCAGGTTAGCCTTCAAATAGTGAATATGTTTGTAAGTTCTTCTA CGATTGATTCTATAGGTGAATAAATTTTTAGGTTTCATATTTGATTATGAGAAAACAGAACATGATAATGATTTCTTACG CGTTAGAATCAGATGCACACCAACATTAAAATACTAGTGTCTTTGAACAAAAGCTTTCTAGTTATAGCGTGTAGTAATGA CCATATCTCAGTGTCGGATTCTTTACTAGAAGGCTAAAAAGCATTTTTGGCCCCTGATATTTCAAGTTTGTGCAAATTCT GCCCCTATCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCACCGTCTACCCCTGACGGAGGGGTAGAC GATGCACTGTTTGAAAACATGAGGGGTAGACAATGCACTGTTTGAAAACATGAGGGGTAGACGATGCACTGTTTGAAAAC ATGAGGGGTAGAAACATCGACAAAAATAGAGTAGAGGCAGAATTTGTACAAACTTGAAACATCAGGGGCCAAAAGTGCAT TTTAACCTTACTAGAAATAGCTCACCGACATTTTACCTTTGATCTCTCTGGGCTACTTGTGTGTTGCTTTTAAACATTGT TTTGTTTGCAAAAGTTGATTTACAAATAAATTAATTAAAAGTTTGCATAACCTCTATATTATTGAGAAAAGAAAAGTTAA TCTAAATATATTCGAAAAAGTTCTTAGTCCAAAAATCTTTGATGACTTTCTGACACACATCCCAATGCTATGATTAGAGA GCAACCTTTCAAAGCTAGGTGATATGATCATGACATTGACCTTACTTGACCCCTTATGATAAACATTGGACTAAGAATCA GAGCTTTCTGCGGCTCTGAGCAAAACTGTGGTTGAATACAATTTTCTTTCTTCTACTTTGGTTTAAAACTTGATGTGATT CTGCTAAGCTTCTTTCCTTTGATAGACAATAGAGGTATAGAAAGAGAACTTTCACAAAATAACGTTTACAACTAGCACCT GCAGCTGACACATAACAATTGCTTGACCCTTTTTCAAAGACTCTTACACTGGTAGTTGTTACCATCCTGATGATTCCTGA GATATGTATTCATTGAGTACTGAAAACTAGTGACAGAGAGAGCCAGAGAGAGAGAGGCACGCAAAGACAGAGTTGTCATT CACTCTGTCACTCTGCATTCTTGGATCCCTCCTATGAAAATGGATTCCCCCAGGAGTGAGGTTTTCCCTTCACACTGCCA AATCCATAACTACATTTGGACACAAAAGCTCATAGTACTAAGTACTACATTCACGATGCACCCAACATAGAATAGCTAAT AATCCTAATTCCTAATCAAGTGGATTTTAAAGACACCATAGCTTAAGTTAATAAAACTAGACATTGAATTTTTTTCAAAG TATTCAATTGAATTTCAATTCCCTTTTTCTGCTAACATGATGTGAGCCAGTATAATAGCATGCATGTTTGGTTTCATGTT GAAACATTTTAGAATCAATTCTGTCAAGAAGCTAAAAGAGTTGAGTAAACACGTCTTGGATTCTATCCAGATCGTGAAAC CAAACATGAATTAAGTAAAATTGTTCAATTAGACTTTGTCTTACCCATTTTCATCTCAGTCATGTATGGCTTATCCTATG TTTATGTGTTTAATTTCTTGAAAAAAACTGATGGTGGTTATATGCAGGGGGATATGGGACTCTAGAGGAGCTTCTTGAAG TCATAACCTGGGCTCAACTTGGGATTCATGACAAGCCTGTAATTGACTTGTCCCATTTCACTAATAATCCATATGATTTA TCAATTTATGTAACATTTCACATCCTAATCATGCTTGGTATTCCAAAATTGTAGGTTGGATTAGTAAATGTTGATGGGTA CTTTAGCTCCTTGTTGTCATTCATTGACAAAGCTGTGGAAGAGGGGTTTATTAGTCCAAATGCCCGCCACATAATTGTTT CAGCACCAACTGCAAAAGAGTTGGTGAAGAAATTGGAGGTAATTTTTCCTAAACTATATGCATTTTCCATCTTGTTACAT GAAAACAAAGATAAAATTTTCCACTTCTGATCAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0690800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAACATGGTGAGATAAGGCACTCAAAGTTCAAAAGGATTTGTGTCTTCTGTGGGAGTAGCCCTGGCAAGAAGCC TAGTTATCAAGATGCTGCCATTGAGCTTGGAAATGAACTGGTTTCAAGGAACATTGATCTGGTGTATGGTGGGGGAAGCA TTGGCCTCATGGGATTGGTTTCACAAGCTGTTCATGATGGCGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATG CCTCGAGAGCTAACTGGTGAAACAGTGGGAGAAGTGAAGGCTGTGGCAAATATGCACCAGAGGAAAGCTGAGATGGCTAA GCATTCAGATGCCTTTATTGCCTTACCAGGGGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCTCAAC TTGGGATTCATGACAAGCCTGTTGGATTAGTAAATGTTGATGGGTACTTTAGCTCCTTGTTGTCATTCATTGACAAAGCT GTGGAAGAGGGGTTTATTAGTCCAAATGCCCGCCACATAATTGTTTCAGCACCAACTGCAAAAGAGTTGGTGAAGAAATT GGAGGTAATTTTTCCTAAACTATATGCATTTTCCATCTTGTTACATGAAAACAAAGATAAAATTTTCCACTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0690800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKHGEIRHSKFKRICVFCGSSPGKKPSYQDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLM PRELTGETVGEVKAVANMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFSSLLSFIDKA VEEGFISPNARHIIVSAPTAKELVKKLEVIFPKLYAFSILLHENKDKIFHF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31223:SF44
1 192 192 7.8E-121 –
PANTHER
PTHR31223
1 192 192 7.8E-121 –
Gene3D
G3DSA:3.40.50.450
3 189 187 2.4E-86 –
SUPERFAMILY
SSF102405
10 187 178 9.46E-61 –
TIGRFAM
TIGR00730
13 188 176 2.0E-60
IPR005269
Pfam
PF03641
57 187 131 5.9E-46
IPR031100

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0690800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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