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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0691400 |
| Transcript ID | LotjaGi1g1v0691400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-like protein; TAIR: AT2G37170.2 plasma membrane intrinsic protein 2; Swiss-Prot: sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2; TrEMBL-Plants: tr|Q2HV44|Q2HV44_MEDTR Major intrinsic protein; Found in the gene: LotjaGi1g1v0691400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125966519..125968361) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAGCACAAATGATTATCATCTAATTGATTAATCAGACATCAAATTTCAGTTACCTGCCTTAAGTACTCAACTTAACC CCACGTTCTTTAAAAAGAAAAACTAACTTAACCCCACGTTAAGAGTTCAAACTTCAAAGTACATACCCTACACATCTAAA TCCCCTTTATATAAACATTCAGATAGAGCTCATTCTCTGTGCAAGCTTTATCTGAGAGAAAAACACTCCACTCTCTGTTC TTCTTCTTCCTCCTCCTCCCATGGCGAAAGACATCGAAACCGAAGCACCGCGAGGTGATCAGTTGGCACACAAGGACTAC CATGACCCACCACCAGCACCGCTCTTCGACACCACCGAGCTCACCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTT CGTCGCCACCCTGCTCTTCCTCTACATCACCGTCCTCACCGTCATCGGCTACAGCAGCCAAACCGACCCCGCTAACACCA CCGACCCTTGCGGCGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTTTACTGCACC GCCGGCATCTCAGGTAACAACAAGAACAAACTATCAAAACCCATCTCATGCCTTTTTTCAAATTAGAGCTTTATGGTGGT TGTGTTCAACAGGGGGTCACATAAACCCGGCGGTGACGTTCGGTTTGTTCCTGGCGAGGAAGGTTTCACTGGTCAGAGCT TTGTTCTACATGGTGGCTCAGTGTTTGGGAGCCATAAGCGGTGTTGGGTTGGTGAAGGCTTTTCAGAAAAGCTACTACAA CAGGTACCATGGCGGTGCAAACATGCTTGCTGATGGCTACTCCAAGGGAACTGGTTTGGGCGCTGAGATTATCGGCACCT TTGTCCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAACGCCAGAGATTCCCATGTTCCTGTAAGCAAAATC TAGTGCTTCATTTCTCATCCTCTATTTTTTTTTTCCTTGTGTAACTCTGTTTTTTCTTTTTTCTTTTACAGGTTTTGGCA CCTCTTCCAATTGGGTTTGCAGTGTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACCGGAATCAACCCTGCTAG AAGCTTCGGAGCTGCTGTCATATACAACAACGAGAAGGCATGGGATGACCAGGTTACTATCTATCTATCTTCCTCACTCT GTTTCTATCTTTCCTCTGTTTTTCTTGGGTGTGAGAATATGATTTTTCATGAATTAATTGTTGAATTTTGCATGGGATTT TTGGTTTAGTGGATCTTCTGGGTGGGACCTTTCATTGGTGCTGCTATTGCTGCAATCTACCACCAGTACGTGTTGAGAGC TCAAGCGGCGAAGGCTCTAGGTTCTTTTAGGAGCTCCGGCCACCTGTAATGTTGTGCAGCCAAGCAGCTACAATGAGTGC TTAATTGTATGATTTATTATTGGTGGATTGGAATTTGTATATCGATCCTAATCACCGTGTATTTTACTATTTTCGAAAGA CATGTTCTTGTTTGTTAATTGATTTATGTATTTTTAAGTGTCAACATTTGAAATGTGCACTCATTGATCAATGCTCTGTT TTGCTATATGGTTTAAGTTTTACTAGTAGTTTTTGTTTTTGTTTTTGTGGAATTTGAAATGATGATAGCGTATGCCGTAT GGAATGATCAATATTCAATCACGTGTGTAGTGATGAGGATTGTAAGTGCAGGGGCTAGAACCCTGTCGCATTGAATGGAT GTATGTGTTGTTGGTGGTCACTGCAGAGCATGGTGGTCCATGCTTGTTTAATTTTTCTGCTATGGATTGAAGGTGGTCCT AGG
CDS sequence (LotjaGi1g1v0691400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAGACATCGAAACCGAAGCACCGCGAGGTGATCAGTTGGCACACAAGGACTACCATGACCCACCACCAGCACC GCTCTTCGACACCACCGAGCTCACCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTCGCCACCCTGCTCTTCC TCTACATCACCGTCCTCACCGTCATCGGCTACAGCAGCCAAACCGACCCCGCTAACACCACCGACCCTTGCGGCGGCGTT GGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTTTACTGCACCGCCGGCATCTCAGGGGGTCA CATAAACCCGGCGGTGACGTTCGGTTTGTTCCTGGCGAGGAAGGTTTCACTGGTCAGAGCTTTGTTCTACATGGTGGCTC AGTGTTTGGGAGCCATAAGCGGTGTTGGGTTGGTGAAGGCTTTTCAGAAAAGCTACTACAACAGGTACCATGGCGGTGCA AACATGCTTGCTGATGGCTACTCCAAGGGAACTGGTTTGGGCGCTGAGATTATCGGCACCTTTGTCCTTGTCTACACCGT CTTCTCCGCCACCGATCCCAAGAGAAACGCCAGAGATTCCCATGTTCCTGTTTTGGCACCTCTTCCAATTGGGTTTGCAG TGTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACCGGAATCAACCCTGCTAGAAGCTTCGGAGCTGCTGTCATA TACAACAACGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTGGGACCTTTCATTGGTGCTGCTATTGCTGCAATCTA CCACCAGTACGTGTTGAGAGCTCAAGCGGCGAAGGCTCTAGGTTCTTTTAGGAGCTCCGGCCACCTGTAA
Protein sequence (LotjaGi1g1v0691400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKDIETEAPRGDQLAHKDYHDPPPAPLFDTTELTKWSFYRALIAEFVATLLFLYITVLTVIGYSSQTDPANTTDPCGGV GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALFYMVAQCLGAISGVGLVKAFQKSYYNRYHGGA NMLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI YNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSGHL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 7 | 288 | 282 | 2.4E-175 | – | |
| PANTHER | 7 | 288 | 282 | 2.4E-175 | ||
| Gene3D | 26 | 288 | 263 | 1.1E-101 | ||
| SUPERFAMILY | 33 | 273 | 241 | 1.02E-65 | ||
| Pfam | 33 | 268 | 236 | 4.4E-84 | ||
| CDD | 41 | 271 | 231 | 9.83678E-79 | ||
| PRINTS | 41 | 60 | 20 | 6.8E-71 | ||
| TMHMM | 42 | 64 | 23 | - | – | |
| Phobius | 43 | 64 | 22 | - | – | |
| TIGRFAM | 45 | 267 | 223 | 8.6E-63 | ||
| Phobius | 65 | 83 | 19 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 84 | 106 | 23 | - | – | |
| PRINTS | 89 | 113 | 25 | 6.8E-71 | ||
| Phobius | 107 | 126 | 20 | - | – | |
| ProSitePatterns | 107 | 115 | 9 | - | ||
| TMHMM | 122 | 144 | 23 | - | – | |
| PRINTS | 126 | 145 | 20 | 6.8E-71 | ||
| Phobius | 127 | 148 | 22 | - | – | |
| Phobius | 149 | 171 | 23 | - | – | |
| TMHMM | 170 | 189 | 20 | - | – | |
| Phobius | 172 | 190 | 19 | - | – | |
| PRINTS | 175 | 193 | 19 | 6.8E-71 | ||
| Phobius | 191 | 201 | 11 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 202 | 224 | 23 | - | – | |
| PRINTS | 211 | 233 | 23 | 6.8E-71 | ||
| Phobius | 225 | 250 | 26 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 251 | 272 | 22 | - | – | |
| PRINTS | 251 | 271 | 21 | 6.8E-71 | ||
| Phobius | 273 | 289 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0691400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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