Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0693300 |
| Transcript ID | LotjaGi1g1v0693300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G53360.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial; TrEMBL-Plants: tr|K7KFS0|K7KFS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0693300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126105265..126109290) extracted from Lotus japonicus Gifu genome v1.2.
GAGGAAAATAAAGTAAAAGGGGGAGAAATCGTAAATACCAAGAATATAAGTTTTGTCTGCACAGCAAGACTGTGACAACT AACGTTTGAGTGCACTCAAAGTTGCATACTTGAGGTTTTCTCTTTAGGTGCGTTATTTTCAGTTATATTGTTTTGTGGTG CAAATTTTGAATCTGATAAATATTCAGCAATGAATTCTCTGTTGTTTAGTTGTTTAAACTATTTTCATGTTAGTTATTGG TGCACATATACAGTTTTTCAACTCTCCTGTGTTTGATTTTAGAGTGCAATTATTTTGCATATAAGGTGTTTGAAAAATGG CCAAGGTGGGAAAGAGATGTTAGCATGGAAAAACAGAGTCATAGGCTATGACCATGTTCATATTTCAAGCATTGGGAAAT GAGAAGTAAATACGAGAGTTTTGCGAGTTGCACAAATTTAGATAAAAATATCTTAGCTAAATGATTTGGCGTAGTGTGAT TCATATATAGCCGACCTCACTTAGCGAGATAAGGCTTTTGTTGCTGTTGTTATTGTTAGCTTAGCTAAATGATTGTTTTA GATTGATGGGTTTCTGATTTCGCGTGGCAATGCCTTAAGAAGTAGAGTCTTATGCTTTTGTTTGGTTGCTGCAGAAGAGT CTTTCCACTTGGTTTTGATGATGGACTGGATGAATTCCATGTCAGTTTCTCTGTATAATCAAACAACACAGGTGACATCT TTGACTATCAGGTTGGCTCTACTCATAGGTGATGACATTCTTGAATTTGCGGCTTTCTTTTAGAGTTTTGATATTTTTTA CATCATTGCTTTGGGAAATGAAATTTCTTTTTGGAGAACACCAAACTCTTGTGGCTAATTGCTCTTGCCTCTTGTGTTCA TATAGATAGAGAAGATAGATCAAGATGGAGGCACTTGAAGCATTCAAAGCCAAATGTACTTAATCACAAACACTCAATTG TGACCACTTTACCGCCCCAAAACTAAGATCATTCAAAGCCAAATTCGATGAATGCATAATTGTGCAACCAACAATTTTCT CCAATCTCAGTAGAGTTATCAAGCCACAGTTACATCAGCTTCATGGGTAAGCAACAGCATTACAAGGAAGCACTTGACGT ATTTTATTCCTATCTGAAGAGCTCAAGTACCAAGCTAGAACCAAGTACATATTCACAATTTATCTCGGCGTGCGCCCACT TTAGATCTCTTGAATATGGCAGGAAAATCCATTTTGACATTTTAAAGTCCAGCTTCCAACCAGGCATTATTCTCCAAAAT CATATACTTAATATGTATGGAAAATGTGGCTCTATGAAGGATGCTAGACAAGTTTTTGATGCAATGCATCTGCGAAATGT GGTCTCTTGGACTTCAATGATCTCCGGATACTCACAGAATGGTCAAGGGAATGAAGCTGTCGTCATGTATATTCAAATGC TGCGATCAGGTTTTTTTCCAGACCAGTTAACTTTTGGAAGCATAATTAAGGCTTGCTGCATTGCAGGGGATATATATTTA GGCAGGCAACTGCATGCCCATGTCATTAAATCAGGGTTTGGTGGCCACTTGGTTGCACAAAATGGTCTTATTTCAATGTA TACAAATTTTGGACAAGTTGCACATGCTTCAGATGTGTTTACCATGATTTCTATAAAGGACTTAATTTCTTGGAGCTCCA TGATTAGAGGGTTTACCCAACTTGGTTATGAGATAGAAGCTCTGTATCTTTTCAGAGATATGCTAAGACAGGGTGTTTAT CAGCCAAATGAGTTTGTACTTGGCAGTGTTTTCAGTGCTTGCAGCAGTCTTCTGGAGCCAGAATATGGAAGGCAAATTCA TGGAATATGTGCTAAATTTGGTTTAGTGAGGAACGTTTTTTCTGGATGCTCCCTCTGTGACATGTATGCCAAATGTGGAT TCCTACCTTCAGCGAAGACAGCATTTTATCAGATTGAAAGCCCCGATTTAGTGTCGTGGAATGCAATTATTGCAGCATTT GCTGACAGTGGTGATGCTAATGAAGCCATATCTATTTTCCGTCAGATGATGCATATCGGATTGATCCCAGACAGCATTAC TTTCCTGTCCTTACTTTGTGCTTGTACTAGCCCCATGGCACTCAACCAAGGCATGCAAATTCATTCTTACATTGTCAAAG TAGGTTTCAATAAGGAAGTAGCCTTATACAACTCTTTGCTAACCATGTACACAAAGTGCTCAAATCTACATGATGCACTC AGTGTTTTCGAAGCTATCAGCAAAAATGCCAATTTGGTATCTTGGAATGCAATTCTTTCAGCATGCTTGCAGCACAAACA AGCAGGAGAGACTTTCAGATTATTTAAACAAATGCTTTTTTCTGAAAATAAACCTAACATGATCACTATAACTAACTTAT TAGGTACTTGTGCTGAATTGGCATCTCTGGAAGTTGGGAATCAAGTCCACTGCTTCAGTGTTAAAAGTGGGCTTGTGCTT GATGTTTCTGTGAGCAATGGATTGATTGACATGTATGCAAAGTGCGGATCAGTTATACATGCTCAACGTGTTTTCGATTC AACCGAGAACCCGAATGTTATCTCATGGAGTAGTTTAATTGTTGGTTATGCTATGTCCGGACTTGGACATGAAGCTCTTA ATCTCTTCAGAAAGATGAGGAATCTTGGTGTTCGGCCTAATGAGGTCACATATGTGGGTGTTCTCAGTGCATGCAGTCAC ATTGGATTGGTGGAGGAAGGCTGGAACTTGTATAATACCATGGAAGAGGAACTAGGAATTCCACCAGCAAGAGAGCACTT CTCTTGCATGGTTGATCTGCTTGCTCGTGCTGGATGCTTGTATGAAGCAGAGACTTTTATTAGGAAAACAGGATTTGATC CTGACATTACTACGTGGAAAACTCTACTTTCTTCTTGTAAAACTCATGGTAATGTTGACATTGCCGAGCGGGCTGCAGAA AATATATTAAAACTTGATCCATCTAATTCTGCTGCACTGGTGCTACTTTCTAGTATACATGCTTCCGCCGGCAATTGGGA AGATGTTGCCAAACTAAGGAAGGTGATGAAACAGATGGGTGTACAAAAGCTTCCTGGTCAAAGTTGGATAGAAGTTAAGG ACAAGTCATAAGATCCATGTGTTCTTCTCAGAAGACTGTTCACATCCACAAAGGGACAAAATCTAAACAATGCTTGAAGA GTTATGGTCACAGGTGCTTGATGATGGCTATGATCCTGCTCAGAGGTTAGGCATCCGCATCAGCATTTGGTAGGTACTAG GTAGTCCGTTGGTAATGTGGCATTGGAGCCACACTGTTCTGCAACAAAAGGGGATCCAGGCTCCAGTTAAGCAAAGACAC TCATCTGCTGTTGCTGTTGGTATTGATTTAAGACTCGGTTTGGACCGTCCGGTTAGATCACTTTGACTGGTAACCAGCCA CATGACCATCTGATATGCAATACAACGGGTGAAAACTGGTTCGACTTCACCAATTTGGTGCCATAAAACAGCCTGCTGAT TGACTCACCAGATGGTGCAACCCTGCTGGTGTTGATTATCTGGGATCCTTTTCTTCAGAGTTATGTTCTTTGAATTCCAT CTGATAGAAATTTTGCATATGATGTTACAACATATTGCATAATCCAAACTTTAAGCAACTGTAACCTGGTGGGATAAGAA GGATTCTCCACGATTCATGAAATTCATATAAAAGGTAATCAAATATAATGGGAAGAAGAGGATACCTTTGTATGGGATTT AGAATACAACCATTGGATCATGTATCTTATGAGACAGTGTGTTTGATAGACAACCAAATGACGGTTGAGCAGTTTATGGT ACAGTTACCTTCCATATGTAGCTAAAACATGTGCTTGAACACAGGGTAAGAAAACGAACTAAACTGATTAAAGTTAGAAC TCCAAATCATTTTAATGCACTGTAAGAAATTTTGTTGAGTACTTACTCCATTTGTTAGAGACACTCTTAATACACCAAAA TGTAAAATCTCATCATTAATCAACTG
CDS sequence (LotjaGi1g1v0693300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGCAACAGCATTACAAGGAAGCACTTGACGTATTTTATTCCTATCTGAAGAGCTCAAGTACCAAGCTAGAACC AAGTACATATTCACAATTTATCTCGGCGTGCGCCCACTTTAGATCTCTTGAATATGGCAGGAAAATCCATTTTGACATTT TAAAGTCCAGCTTCCAACCAGGCATTATTCTCCAAAATCATATACTTAATATGTATGGAAAATGTGGCTCTATGAAGGAT GCTAGACAAGTTTTTGATGCAATGCATCTGCGAAATGTGGTCTCTTGGACTTCAATGATCTCCGGATACTCACAGAATGG TCAAGGGAATGAAGCTGTCGTCATGTATATTCAAATGCTGCGATCAGGTTTTTTTCCAGACCAGTTAACTTTTGGAAGCA TAATTAAGGCTTGCTGCATTGCAGGGGATATATATTTAGGCAGGCAACTGCATGCCCATGTCATTAAATCAGGGTTTGGT GGCCACTTGGTTGCACAAAATGGTCTTATTTCAATGTATACAAATTTTGGACAAGTTGCACATGCTTCAGATGTGTTTAC CATGATTTCTATAAAGGACTTAATTTCTTGGAGCTCCATGATTAGAGGGTTTACCCAACTTGGTTATGAGATAGAAGCTC TGTATCTTTTCAGAGATATGCTAAGACAGGGTGTTTATCAGCCAAATGAGTTTGTACTTGGCAGTGTTTTCAGTGCTTGC AGCAGTCTTCTGGAGCCAGAATATGGAAGGCAAATTCATGGAATATGTGCTAAATTTGGTTTAGTGAGGAACGTTTTTTC TGGATGCTCCCTCTGTGACATGTATGCCAAATGTGGATTCCTACCTTCAGCGAAGACAGCATTTTATCAGATTGAAAGCC CCGATTTAGTGTCGTGGAATGCAATTATTGCAGCATTTGCTGACAGTGGTGATGCTAATGAAGCCATATCTATTTTCCGT CAGATGATGCATATCGGATTGATCCCAGACAGCATTACTTTCCTGTCCTTACTTTGTGCTTGTACTAGCCCCATGGCACT CAACCAAGGCATGCAAATTCATTCTTACATTGTCAAAGTAGGTTTCAATAAGGAAGTAGCCTTATACAACTCTTTGCTAA CCATGTACACAAAGTGCTCAAATCTACATGATGCACTCAGTGTTTTCGAAGCTATCAGCAAAAATGCCAATTTGGTATCT TGGAATGCAATTCTTTCAGCATGCTTGCAGCACAAACAAGCAGGAGAGACTTTCAGATTATTTAAACAAATGCTTTTTTC TGAAAATAAACCTAACATGATCACTATAACTAACTTATTAGGTACTTGTGCTGAATTGGCATCTCTGGAAGTTGGGAATC AAGTCCACTGCTTCAGTGTTAAAAGTGGGCTTGTGCTTGATGTTTCTGTGAGCAATGGATTGATTGACATGTATGCAAAG TGCGGATCAGTTATACATGCTCAACGTGTTTTCGATTCAACCGAGAACCCGAATGTTATCTCATGGAGTAGTTTAATTGT TGGTTATGCTATGTCCGGACTTGGACATGAAGCTCTTAATCTCTTCAGAAAGATGAGGAATCTTGGTGTTCGGCCTAATG AGGTCACATATGTGGGTGTTCTCAGTGCATGCAGTCACATTGGATTGGTGGAGGAAGGCTGGAACTTGTATAATACCATG GAAGAGGAACTAGGAATTCCACCAGCAAGAGAGCACTTCTCTTGCATGGTTGATCTGCTTGCTCGTGCTGGATGCTTGTA TGAAGCAGAGACTTTTATTAGGAAAACAGGATTTGATCCTGACATTACTACGTGGAAAACTCTACTTTCTTCTTGTAAAA CTCATGGTAATGTTGACATTGCCGAGCGGGCTGCAGAAAATATATTAAAACTTGATCCATCTAATTCTGCTGCACTGGTG CTACTTTCTAGTATACATGCTTCCGCCGGCAATTGGGAAGATGTTGCCAAACTAAGGAAGGTGATGAAACAGATGGGTGT ACAAAAGCTTCCTGGTCAAAGTTGGATAGAAGTTAAGGACAAGTCATAA
Protein sequence (LotjaGi1g1v0693300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKQQHYKEALDVFYSYLKSSSTKLEPSTYSQFISACAHFRSLEYGRKIHFDILKSSFQPGIILQNHILNMYGKCGSMKD ARQVFDAMHLRNVVSWTSMISGYSQNGQGNEAVVMYIQMLRSGFFPDQLTFGSIIKACCIAGDIYLGRQLHAHVIKSGFG GHLVAQNGLISMYTNFGQVAHASDVFTMISIKDLISWSSMIRGFTQLGYEIEALYLFRDMLRQGVYQPNEFVLGSVFSAC SSLLEPEYGRQIHGICAKFGLVRNVFSGCSLCDMYAKCGFLPSAKTAFYQIESPDLVSWNAIIAAFADSGDANEAISIFR QMMHIGLIPDSITFLSLLCACTSPMALNQGMQIHSYIVKVGFNKEVALYNSLLTMYTKCSNLHDALSVFEAISKNANLVS WNAILSACLQHKQAGETFRLFKQMLFSENKPNMITITNLLGTCAELASLEVGNQVHCFSVKSGLVLDVSVSNGLIDMYAK CGSVIHAQRVFDSTENPNVISWSSLIVGYAMSGLGHEALNLFRKMRNLGVRPNEVTYVGVLSACSHIGLVEEGWNLYNTM EEELGIPPAREHFSCMVDLLARAGCLYEAETFIRKTGFDPDITTWKTLLSSCKTHGNVDIAERAAENILKLDPSNSAALV LLSSIHASAGNWEDVAKLRKVMKQMGVQKLPGQSWIEVKDKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 146 | 146 | 4.0E-32 | ||
| PANTHER | 9 | 150 | 142 | 4.3E-146 | – | |
| ProSiteProfiles | 26 | 60 | 35 | 7.673 | ||
| ProSiteProfiles | 61 | 91 | 31 | 6.971 | ||
| TIGRFAM | 66 | 94 | 29 | 9.4E-4 | ||
| Pfam | 91 | 139 | 49 | 1.8E-13 | ||
| ProSiteProfiles | 92 | 126 | 35 | 12.079 | ||
| TIGRFAM | 94 | 127 | 34 | 1.3E-7 | ||
| ProSiteProfiles | 127 | 161 | 35 | 7.783 | ||
| PANTHER | 146 | 242 | 97 | 4.3E-146 | – | |
| Gene3D | 147 | 244 | 98 | 5.3E-12 | ||
| ProSiteProfiles | 193 | 227 | 35 | 10.161 | ||
| Pfam | 195 | 225 | 31 | 7.8E-6 | ||
| TIGRFAM | 195 | 229 | 35 | 1.3E-5 | ||
| Gene3D | 245 | 345 | 101 | 2.7E-17 | ||
| PANTHER | 248 | 356 | 109 | 4.3E-146 | – | |
| Pfam | 294 | 341 | 48 | 1.3E-9 | ||
| ProSiteProfiles | 295 | 329 | 35 | 12.145 | ||
| TIGRFAM | 297 | 330 | 34 | 2.5E-5 | ||
| ProSiteProfiles | 330 | 364 | 35 | 5.875 | ||
| Gene3D | 346 | 456 | 111 | 7.4E-20 | ||
| PANTHER | 347 | 452 | 106 | 4.3E-146 | – | |
| ProSiteProfiles | 365 | 395 | 31 | 7.848 | ||
| Pfam | 369 | 391 | 23 | 0.032 | ||
| Pfam | 397 | 444 | 48 | 2.4E-8 | ||
| ProSiteProfiles | 397 | 431 | 35 | 9.843 | ||
| TIGRFAM | 399 | 432 | 34 | 3.3E-4 | ||
| ProSiteProfiles | 432 | 466 | 35 | 5.174 | ||
| PANTHER | 449 | 663 | 215 | 4.3E-146 | – | |
| Gene3D | 457 | 543 | 87 | 1.3E-20 | ||
| ProSiteProfiles | 467 | 497 | 31 | 6.412 | ||
| Pfam | 472 | 492 | 21 | 0.83 | ||
| Pfam | 497 | 545 | 49 | 1.6E-10 | ||
| ProSiteProfiles | 498 | 532 | 35 | 11.926 | ||
| TIGRFAM | 500 | 534 | 35 | 6.5E-6 | ||
| ProSiteProfiles | 533 | 567 | 35 | 8.813 | ||
| TIGRFAM | 535 | 568 | 34 | 0.0017 | ||
| Gene3D | 544 | 631 | 88 | 4.9E-14 | ||
| ProSiteProfiles | 601 | 631 | 31 | 6.61 | ||
| ProSiteProfiles | 635 | 669 | 35 | 6.982 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0693300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…