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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0696300 |
| Transcript ID | LotjaGi1g1v0696300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lung seven transmembrane receptor family protein; TAIR: AT5G18520.1 Lung seven transmembrane receptor family protein; Swiss-Prot: sp|Q8BUV8|GP107_MOUSE Protein GPR107; TrEMBL-Plants: tr|V7CX63|V7CX63_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0696300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126403446..126404771) extracted from Lotus japonicus Gifu genome v1.2.
TTCACCGTGATGGCCAAAACGACATCCTCCTTCGCCGTATTACTCCTCCTCTCCCTCCTTACCCCTTCCACCGCCGAGAT CAAATCCCTCACCATCAACTCCGACACCCGCCCCATGATCCTCTTCGAGAAATTCGGTTTCACCCACAAAGGCCACGTCT CCATCGCCGTCTCCTCCGTCTCCGTCGCCGTCCTCACCTCCGCCTCCCAACCCGAATCCTCCCGCCTCGGTTTCTTCCTC CTCAACGAAGAAACCCTCGTCCAAGTCCTCATGGAGATCCAGCAAAACCCCTCCTTCTGCGTCCTCGATTCCCACTACAT CTTCCGCCTCTTCACCTTCCGCGACCTCTCGCCACCTCCCTCCGCCTCCGTCAACCGATCTTACCCCGTCACCAACCCCA ACGAGTACAGCCTCTTCTTCGCTAACTGCGCACCGGAAACCTCCGTCTCCATGGTCGTCCGCACCGAGGTCTTCAACCTC GATTCCGATGGCTCCCGTGACTACCTCTCCGCCGGCCAGACAACACTCCCTTCCATCTTCTTCCTCTTCTCCCTCGCCTA CATGGGTTTCTTCGCCGCCTGGGTCTACCTCTGCTACGCCAACAAGCGATCGTTCCACCGCATCCATCTCCTCATGGCCG TCCTTCTCGTCACCAAAGCTTTGAATCTGATCTGCGCCGCCGAGGACAAGCACTACATTAAGGTCACCGGTCTTCCTCAC GGCTGGGATGTACTTTTCTACATCTTCCAGTTCATCCGTGTGATTTTGCTCTTCACTGTCATTGTCTTGATCGGAACTGG GTGGTCTTTCCTCAAGCCATTCTTGCAGGACAGGGAGAAGAAGGTGTTGATGATCGTGATCCCGCTTCAGGTTCTTGCCA ATTTAGCTTCGGTTGTGATCGGCGAAACTGGGCCATTCATCAAGGATTGGGTTACTTGGAACCAGGTGTTCTTGCTGGTT GATATTATATGTTGTTGTGCTATCATTTTCCCAATTGTTTGGTCTATTAGATCGCTCAGGGAAACCTCGAAGACTGACGG AAAGGCTTCGAGGAATCTCGCAAAGTTGACACTCTTCAGGCAATTCTACATTGTTGTTATTGGGTATCTGTATTTTACCA GAATAGTGGTGTTTGCGTTGAGAACTATTGCAGCTTATAAGTATCAATGGGTGAGTAATGCTGCTGAGGAGATTGCTAGT CTTGCATTTTACATTATCATGTTCTACATGTTTAGACCAGTGGAGAAGAATGAGTACTTTGTCCTTGATGAGGAGGAAGA AGAGGCGGCGGAAATCGCGCTCAGGGATGAAGAATTTGAGCTTTGA
CDS sequence (LotjaGi1g1v0696300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAACGACATCCTCCTTCGCCGTATTACTCCTCCTCTCCCTCCTTACCCCTTCCACCGCCGAGATCAAATCCCT CACCATCAACTCCGACACCCGCCCCATGATCCTCTTCGAGAAATTCGGTTTCACCCACAAAGGCCACGTCTCCATCGCCG TCTCCTCCGTCTCCGTCGCCGTCCTCACCTCCGCCTCCCAACCCGAATCCTCCCGCCTCGGTTTCTTCCTCCTCAACGAA GAAACCCTCGTCCAAGTCCTCATGGAGATCCAGCAAAACCCCTCCTTCTGCGTCCTCGATTCCCACTACATCTTCCGCCT CTTCACCTTCCGCGACCTCTCGCCACCTCCCTCCGCCTCCGTCAACCGATCTTACCCCGTCACCAACCCCAACGAGTACA CCCGTGACTACCTCTCCGCCGGCCAGACAACACTCCCTTCCATCTTCTTCCTCTTCTCCCTCGCCTACATGGGTTTCTTC GCCGCCTGGGTCTACCTCTGCTACGCCAACAAGCGATCGTTCCACCGCATCCATCTCCTCATGGCCGTCCTTCTCGTCAC CAAAGCTTTGAATCTGATCTGCGCCGCCGAGGACAAGCACTACATTAAGGTCACCGGTCTTCCTCACGGCTGGGATGTAC TTTTCTACATCTTCCAGTTCATCCGTGTGATTTTGCTCTTCACTGTCATTGTCTTGATCGGAACTGGGTGGTCTTTCCTC AAGCCATTCTTGCAGGACAGGGAGAAGAAGGTGTTGATGATCGTGATCCCGCTTCAGGTTCTTGCCAATTTAGCTTCGGT TGTGATCGGCGAAACTGGGCCATTCATCAAGGATTGGGTTACTTGGAACCAGGTGTTCTTGCTGGTTGATATTATATGTT GTTGTGCTATCATTTTCCCAATTGTTTGGTCTATTAGATCGCTCAGGGAAACCTCGAAGACTGACGGAAAGGCTTCGAGG AATCTCGCAAAGTTGACACTCTTCAGGCAATTCTACATTGTTGTTATTGGGTATCTGTATTTTACCAGAATAGTGGTGTT TGCGTTGAGAACTATTGCAGCTTATAAGTATCAATGGGTGAGTAATGCTGCTGAGGAGATTGCTAGTCTTGCATTTTACA TTATCATGTTCTACATGTTTAGACCAGTGGAGAAGAATGAGTACTTTGTCCTTGATGAGGAGGAAGAAGAGGCGGCGGAA ATCGCGCTCAGGGATGAAGAATTTGAGCTTTGA
Protein sequence (LotjaGi1g1v0696300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTTSSFAVLLLLSLLTPSTAEIKSLTINSDTRPMILFEKFGFTHKGHVSIAVSSVSVAVLTSASQPESSRLGFFLLNE ETLVQVLMEIQQNPSFCVLDSHYIFRLFTFRDLSPPPSASVNRSYPVTNPNEYTRDYLSAGQTTLPSIFFLFSLAYMGFF AAWVYLCYANKRSFHRIHLLMAVLLVTKALNLICAAEDKHYIKVTGLPHGWDVLFYIFQFIRVILLFTVIVLIGTGWSFL KPFLQDREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKASR NLAKLTLFRQFYIVVIGYLYFTRIVVFALRTIAAYKYQWVSNAAEEIASLAFYIIMFYMFRPVEKNEYFVLDEEEEEAAE IALRDEEFEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 8 | 134 | 127 | 5.0E-226 | ||
| PANTHER | 8 | 134 | 127 | 5.0E-226 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 147 | 125 | - | – | |
| PANTHER | 134 | 410 | 277 | 5.0E-226 | – | |
| Pfam | 134 | 386 | 253 | 1.1E-46 | ||
| PANTHER | 134 | 410 | 277 | 5.0E-226 | ||
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Phobius | 169 | 176 | 8 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 177 | 193 | 17 | - | – | |
| Phobius | 194 | 212 | 19 | - | – | |
| CDD | 208 | 374 | 167 | 0.00208967 | – | |
| Phobius | 213 | 239 | 27 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 240 | 250 | 11 | - | – | |
| TMHMM | 251 | 270 | 20 | - | – | |
| Phobius | 251 | 270 | 20 | - | – | |
| Phobius | 271 | 281 | 11 | - | – | |
| Phobius | 282 | 303 | 22 | - | – | |
| TMHMM | 285 | 307 | 23 | - | – | |
| Phobius | 304 | 330 | 27 | - | – | |
| Phobius | 331 | 353 | 23 | - | – | |
| TMHMM | 331 | 353 | 23 | - | – | |
| Phobius | 354 | 358 | 5 | - | – | |
| Phobius | 359 | 380 | 22 | - | – | |
| TMHMM | 363 | 380 | 18 | - | – | |
| Phobius | 381 | 410 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0696300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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