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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0696600 |
| Transcript ID | LotjaGi1g1v0696600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein; TAIR: AT1G07710.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620; TrEMBL-Plants: tr|G7L0Q4|G7L0Q4_MEDTR Ankyrin repeat plant protein; Found in the gene: LotjaGi1g1v0696600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126437332..126439183) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGCCTTTCCTGAAATTTCAATGACAGTTGATCTGTCAAACACTACTGCATTGCACACTGCTGCAGCACAAGGACA TATCCATGTTGTAAATTTTCTCTTGGAGAAAGGTTACAGCCTGATAAGTATTGCAAAAAGCAATGGGAAAACTGTGTTGC ATTCGGCTGCAAGAAACGGCCACGTGGAGGTCATCAAGGCCATTCTAAGCAGAGAGCCTGAAATTGCAATGAGAATTGAT AAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAAAACCTTGAATTGGTGGATGAGCTTGTGACATTGACTCC ATCTTCGGTTAATATGGTGGATGCCAAAGGAAACACTGCACTGCATATAGCAACCCGGAAGAGTCGTCTAAAGGTACGGA AAAAACACAAGAAAACTGCCTTCCTGATTTTTCTTTCTTAAGTAGATACTGATCTTGTGTTCTTTCCTTCTAAGACCTTG AACAGCACAAACTAAATTTCCTTATTAGTTCCAGATGTGATACTTCAGATGAGGTCTGCTTTTACTAACACTGATAACAA CTGCATATTTGTATTAGAACTTTTTCGAAATTAAAATTTGAAGTGAAGAATATTTAAAAGAATTTCTGTATGTGTCTGGT TTGTCTAAAGAATGAAAGAAGTGAACTTTCAACTTACTTTATTCAGCACTTTTAGTGGTAGACGTGCACTGTATATCAAT TGAGCTGTAAATGTGAGTGCAATTACTATCCTGTCTTGTGGTAAAACTTAAAGGTGTGGTGGTATAAATGCAATAAGTTA GTAATTGATAGAATCTGTTTTGTTTATTTTTTGTTTGTGATATACAGTGTGTTCTGCATAAATTTTAATATCGTACAATT TGTATTAGTCCTAAGCTGAACTTCTGGTTGAGCTAATTAGCATAAGCAGTTTTTAGGTCCTGCAACCATAGTAAGCAAAC TCACCATCGTTTTCTTGTGCTGATCTTGCAGATTATTCAGAGGTTACTAGATTGCAGTGAAATAGACACAAACGTTATCA ATAAATCTGGAGAAACTGCTTTGGATATTGCAGAGAGAAGTAGTCACTTGGAAATTACCAACTCTCTACAAGATCATGGA GCTCAAAATGCTAAGTCCATCAGGTCATCTTCCAGAAACCCAGCCCTTGAACTCAAACGGACTGTGAGTGACATAAAAAG CGGGGTACATAACCAGCTGGAACACACATTTAAAACGCAAAGGCGTATGAAAGGCATAGCCAAGCGAATTAACAAGATGC ATGCTGAGGGGCTTAACAATGCAATCAACTCCAATACCGTTGTTGCTGTCCTCATCGCAACAGTGGCTTTCGCTGCCATA TTTACTGTCCCAGGCCAGTATCCTAGAAACCCAGAGGAACTCGCTCCTGGAATGTCTCCGGGAGAAGCAAACATTGCTCC GAATACCGAATTCTTGATATTCATGATCTTTGATTCTACTGCCTTATTCATATCATTGGCTGTTGTGGTTGTCCAAACAT CTGTGGTTATTATAGACAGGAAGACAAAGAAACAAATGACAGCAGTTATAAATAAGTTAATGTGGATAGCCTGTGTGCTA ATTTCTGTGGCATTCATGGCAATGTCTTACATAGTTGTGGGGGATCACAAAGAGTTGGCTATTGCAGCCACAGTTCTAGG AACAGTGATTATGGTAGCTACTCTAGGAACACTCTGTTATTGGGTGATCGCCCACCGCCTTGAAGCATCCAGATTGAGAA GTCAACGGACAATGACAAGCAGCAGGCAGTCATTCGCTATGTCAATGATGTCAGATCATGAGAATGAGTTTAAGACAGTG TACGCTATATAA
CDS sequence (LotjaGi1g1v0696600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCTTTCCTGAAATTTCAATGACAGTTGATCTGTCAAACACTACTGCATTGCACACTGCTGCAGCACAAGGACA TATCCATGTTGTAAATTTTCTCTTGGAGAAAGGTTACAGCCTGATAAGTATTGCAAAAAGCAATGGGAAAACTGTGTTGC ATTCGGCTGCAAGAAACGGCCACGTGGAGGTCATCAAGGCCATTCTAAGCAGAGAGCCTGAAATTGCAATGAGAATTGAT AAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAAAACCTTGAATTGGTGGATGAGCTTGTGACATTGACTCC ATCTTCGGTTAATATGGTGGATGCCAAAGGAAACACTGCACTGCATATAGCAACCCGGAAGAGTCGTCTAAAGATTATTC AGAGGTTACTAGATTGCAGTGAAATAGACACAAACGTTATCAATAAATCTGGAGAAACTGCTTTGGATATTGCAGAGAGA AGTAGTCACTTGGAAATTACCAACTCTCTACAAGATCATGGAGCTCAAAATGCTAAGTCCATCAGGTCATCTTCCAGAAA CCCAGCCCTTGAACTCAAACGGACTGTGAGTGACATAAAAAGCGGGGTACATAACCAGCTGGAACACACATTTAAAACGC AAAGGCGTATGAAAGGCATAGCCAAGCGAATTAACAAGATGCATGCTGAGGGGCTTAACAATGCAATCAACTCCAATACC GTTGTTGCTGTCCTCATCGCAACAGTGGCTTTCGCTGCCATATTTACTGTCCCAGGCCAGTATCCTAGAAACCCAGAGGA ACTCGCTCCTGGAATGTCTCCGGGAGAAGCAAACATTGCTCCGAATACCGAATTCTTGATATTCATGATCTTTGATTCTA CTGCCTTATTCATATCATTGGCTGTTGTGGTTGTCCAAACATCTGTGGTTATTATAGACAGGAAGACAAAGAAACAAATG ACAGCAGTTATAAATAAGTTAATGTGGATAGCCTGTGTGCTAATTTCTGTGGCATTCATGGCAATGTCTTACATAGTTGT GGGGGATCACAAAGAGTTGGCTATTGCAGCCACAGTTCTAGGAACAGTGATTATGGTAGCTACTCTAGGAACACTCTGTT ATTGGGTGATCGCCCACCGCCTTGAAGCATCCAGATTGAGAAGTCAACGGACAATGACAAGCAGCAGGCAGTCATTCGCT ATGTCAATGATGTCAGATCATGAGAATGAGTTTAAGACAGTGTACGCTATATAA
Protein sequence (LotjaGi1g1v0696600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAFPEISMTVDLSNTTALHTAAAQGHIHVVNFLLEKGYSLISIAKSNGKTVLHSAARNGHVEVIKAILSREPEIAMRID KKGQTALHMAVKGQNLELVDELVTLTPSSVNMVDAKGNTALHIATRKSRLKIIQRLLDCSEIDTNVINKSGETALDIAER SSHLEITNSLQDHGAQNAKSIRSSSRNPALELKRTVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMHAEGLNNAINSNT VVAVLIATVAFAAIFTVPGQYPRNPEELAPGMSPGEANIAPNTEFLIFMIFDSTALFISLAVVVVQTSVVIIDRKTKKQM TAVINKLMWIACVLISVAFMAMSYIVVGDHKELAIAATVLGTVIMVATLGTLCYWVIAHRLEASRLRSQRTMTSSRQSFA MSMMSDHENEFKTVYAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 198 | 198 | 1.2E-42 | ||
| PANTHER | 1 | 417 | 417 | 3.1E-254 | – | |
| PANTHER | 1 | 417 | 417 | 3.1E-254 | – | |
| Phobius | 1 | 235 | 235 | - | – | |
| SUPERFAMILY | 11 | 175 | 165 | 3.73E-40 | ||
| SMART | 14 | 44 | 31 | 0.081 | ||
| ProSiteProfiles | 14 | 46 | 33 | 10.633 | ||
| ProSiteProfiles | 14 | 176 | 163 | 38.568 | ||
| Pfam | 14 | 75 | 62 | 7.1E-12 | ||
| SMART | 48 | 77 | 30 | 9.5E-5 | ||
| ProSiteProfiles | 48 | 80 | 33 | 10.553 | ||
| SMART | 82 | 112 | 31 | 0.011 | ||
| ProSiteProfiles | 82 | 103 | 22 | 8.63 | ||
| Pfam | 87 | 176 | 90 | 3.7E-12 | ||
| ProSiteProfiles | 116 | 138 | 23 | 9.084 | ||
| SMART | 116 | 146 | 31 | 0.39 | ||
| SMART | 150 | 180 | 31 | 160.0 | ||
| Pfam | 230 | 346 | 117 | 1.5E-28 | ||
| TMHMM | 235 | 257 | 23 | - | – | |
| Phobius | 236 | 257 | 22 | - | – | |
| Phobius | 258 | 284 | 27 | - | – | |
| Phobius | 285 | 306 | 22 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 307 | 326 | 20 | - | – | |
| TMHMM | 323 | 345 | 23 | - | – | |
| Phobius | 327 | 347 | 21 | - | – | |
| Phobius | 348 | 352 | 5 | - | – | |
| Phobius | 353 | 377 | 25 | - | – | |
| TMHMM | 355 | 377 | 23 | - | – | |
| Phobius | 378 | 417 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0696600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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