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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0702900 |
| Transcript ID | LotjaGi1g1v0702900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT2G20330.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9NW82|WDR70_HUMAN WD repeat-containing protein 70; TrEMBL-Plants: tr|I1N9W2|I1N9W2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0702900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127113302..127117644) extracted from Lotus japonicus Gifu genome v1.2.
ACTTCATATATTTATAACTTTAAACTTGTTATCATCAAAACTTATAAAAAGAACTTTAGGTACTGAAGGTTGAGACTTAA CAAATACGTCTCAAAAGACATGGGCTAGAAGAAGGTGGTTGGAACTTCGGGTGGTTTGTAGTATGTGGACGATGAGCTCT ACCTGCAACTGGGTTAGATTTCTGAAATTTACAGTGTCTACCTCGAAGTTCCAAAGATTAAATAACGTCAAACAATCAGT TTCTCTCAACCAGTGTTATAAGACTCAACACGAACTGGTTGGTCCTACTAGTTAACTCCGACTCGATCACCTAACCGGTC CGAACATCTCCCTAATTAAATACTAACAAATAATAATAAAAACAACAATAATAATAATAATAATAAATAAATGTGCTATA CTGCTATTTGTGCAGAGTAGTTGCGGCGGTGCAAGCATGGAGGAAGACGGCGAGATTTACGACGGTGCTAGGGCTCAATT CCCTCTGAGCTTCGGCAAGCAATCCAAGTCTCAAACCCCTCTCGAAGCAATCCACAACGCCACTCGTCGTTCCAATTCCA AAACCACCACCGATTTCCCTCCCGTTTCCTCTTCTTCCAAGGAATGGCTCAGCTCCCTCCGCCCCTCCAAAAACCCCACC GCACCTCCTCCGCCCGAACAGGAGGACGACGACGGCCCCCTGGTGGGACCCCCTCCACCTCCCCCATCGCAACAACAACC CGATGACGACGGCGAGATGTTTGGCCCGCCCCCGCCGCCCCCTGCCTCCAATTTCAATGACTCGGACTCCGAACAAGATT CCGATCAAGACGATGTCGGAACCCGGTTCAGAATCCCCCTCAGCAACGAGATTGTTCTCAAGGGCCACACCAAGGTATTC AATTTTATTCGTTTTTTGAAACCCTAACTGTTCAATTGATGGTAAAGAAATGAACTCAATGCAGATTGTAGAGTGATACT GAAATTTTGAAATTTTGGGTGTAACTATGATTATCAGGTTGTGTCAGCTCTTGCGGTGGATCATTCTGGGTCGAGAGTGC TTTCTGGAAGCTATGATTACACGGTGCGTATGTATGATTTTCAAGGGATGAACTCTCGCTTGCAATCATTTCGACAATTG GAGCCATTCGAAGGCCACCAAGTTCGGAATTTGAGCTGGAGTCCCTCTGCGGATCGGTTTCTCTGCATTACTGGATCAGC TCAAGCTAAGGTTAACAATAGATAGCATTTAGCTTCGCAGCATTATTATCTGTTCTTCGATTTTTTGAGGTTTTGGTAGT TAATGCTAATTCACTATTGTGCAGATTTATGATCGTGATGGTCTCACTTTGGGAGAGTTTATGAAGGGAGACATGTATAT TCGTGATCTGAAGAATACTAAGGGTCACATTACAGGATTGACATGGGGGGAGTGGCACCCGAAAGCTAAAGAGACCATTT TAACATCTTCCGAGGACGGGTCGCTGCGGATATGGGATGTGAATGACTTCAAGAGTCAGAAGCAGGTTTGCATGTTTTCT CTGGATGAGTAGTTCAATGCATTGTGATTTTCTTGTCGTTTTATAATCTTTGATTGGTGGAACAGAACAACTTTCAGACA GAAACTTTGTTAGGTCTTTAGGAAAATAATTGGTTCGCACCTATTCCATTCCACCCACTCCGAGAGAGATAAGAATAGAA GTGAGAGATATGATGAGTTATGTGATAAGAAAAGAAGAGAGGTATATGAAGTAAAAGTGAGTGGAAATGAGATTGAAGAG GGAGTGTGAATGTATCAAAGTTGTTGCCTTTATGATACCCCTCTGCTGGAAAAAAAAAATTATCGGTATATGACTGAAAA TGAGGATATGGATGTGTTTGGGCTCAAACATGCATGGAATAAAAATAGATGATTAATATCATAGTAGCCAGCGAGACTCG GAATTTCTCCAATTCTCTCAAAATTGTCATTTTTCTACCCCATGATACTCAAAGAATATGGATTTTGTTTTTGGTTTTTT TTTTTACACTTTTTTGGTGCTATTGAAGTTATGCTTCTATCATTCAATGGTTAGGTTATTAAACCAAAGCTTTCGAGACC TGGAAGAGTTCCTGTGAACACATGTACATGGAATCATGATGGTAAATGCATTGCTGGTGGTATCGGAGATGGTTCTATAC AGGTACCAATATTCTCTTAGTGGCTTTATTGGGCAATAGGGTCATTACCTGTATGCTGCTGTTCAGTTTGAAATAACATT AACTTTCTCCTGATGTTGCTTGGAATGCTCAATTAATATTCACAGATTTGGAATATTAAACCTGGATGGGGGAGTAGGCC AGATATACACATTGAAAAAAGTCATGAGGATGATATTACCGGTCTGACATTTTCTAGTGATGAGAGAATCTTATTATCAA GGAGCTTTGATGGTTCATTGAAGGTAAATAATGATCACATACTTGAAATTGTAACTTTTTTGTTTGCTTTCTTTATTAGG CATGCATTCACACGTACCTAATCTTCCTGACTTCTCCTGATTGACCATTGAATTATGTCTCAGGTATGGGATCTGCGCAA AACAAAGGATGCATTAAAGGTGTTTGAGGATCTGCCAAATAACTATGCACAAACAAATATTGCCTTCAGTCCTGATGAGC AACTCTTTTTTACTGGAACATCTGTTGAAAGGGAGAGCACCACGGGAGGTTTATTGTGCTTCTTTGATAGATTAAATCTT GACCTTGTTTCTAGAGTTGGCATTGCCCCGACTTCTAGTGTTATTCGGTGTTCTTGGCATCCCAAACTGAATCAGGTAAC ATAATATCAAAGTTGTGTTACTTAACAATTTTCCAGTGCTAACTTGCAGTGTCTGAAACTAGATTTGTTGCCTATGCTTA TAATACTCCTTGAACTTCTTTTTCCTTGTAAAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACT ATATGATCCAACCATCAGCGAGAAAGGAGCTCTTGTTTGCGTTGCACGGGCACCAAGGAAAAAATCAGTTGATGACTTCG AAGCAAAACCTGCAATTCATAATCCTCATGCCTTACCGCTGTTCAGAGATCAGCCAAGCCGCAAGCGTCAACGAGAGAAA ATTTTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCCATGAATGGACCTGGCTTTGGTGGGCGAGTTGGTACCAG TCAAGGAAGCTTGCTCACCCAGTATCTACTAAAGGTATTAAAACAGTGTTGGGTGTATTTCTTTCTCGTCATTTTTCTTG ACTTCCCAGTTTTCATGTTTTAGAATATAAAGGTGGAAGGTACTTATGTGATATTTTAATGCAATTGCAGCAAGGGGGTA TGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATTCTAAAATATGCTGATGTTGCTAAAAAGGATCCAAAG TACATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCTGTGTATGCGAAGTCAGATTCTGAGGATGAAGAGAAATGATT ATGTAATGAAGTAACGATCGCTGGTAGCCCGGTATCGCCGGTGCGTAATGCAGAGGGGGCGGCAGGCAAGAGTGACTCAA ACACGAGGGGAGCATTCCCAACATGGGACTGCATATACCCTTCCCAGCAATGTTTAGTTTAGGCAGCTTGGTAGCTCTAC AAAGTTTTAGCAATCTTCTTTGCGCGGAGTATTGGTATGATCTGTACATTATGTAGTGTGTAAAATTGAATTTTTAAAAC AATTCAAATGCTATTTTTAACAAACTGTTAGAAATTTTCTTATGCATGTAATAACTTTTCGTGGAAGATTGCTTGTCGTC TAGAACTTGGCACAGCACGGATAATTGTGGCATGGTGGTCAAACTGAGAAGTGAAGTATGCGTGAATTTGCACTGGAGAG TTTAGTCTGTGTCTACTATGGAAGATATGTAATAAAAAAAAAATTCTTTTAACATAACTGTAAAAAAAAACAGCATTTTT ATTCAATAGAAGAGTGTAAGACTGATGCTGTGTTTGTTTGGAGGTGGCTTGGGTAGAGAGAAAAAGGGAAGAGAGAGTTA GGTTAGAAATAGAGCTCCTCCCTTGTTTGGCTTGCATCTCACAAGGGAGAGAGAGTCTGAAATGTTGATCTATAATTGAT TCTGAGTGAAGGAAAAAAGTTGATCTATAAATAGGTTTCTCTTCCTTTCGATTCAGAGTTTTAGACAATAGTGTGGATAT TGAGTGGCATCAGAAATTATTACATGAAACATCTAGATCATGAGCACAATTTGTTGGAGAAGGTAACCAAAACTAACCAC ATGCAATGCAATATTGAATTCAC
CDS sequence (LotjaGi1g1v0702900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGACGGCGAGATTTACGACGGTGCTAGGGCTCAATTCCCTCTGAGCTTCGGCAAGCAATCCAAGTCTCAAAC CCCTCTCGAAGCAATCCACAACGCCACTCGTCGTTCCAATTCCAAAACCACCACCGATTTCCCTCCCGTTTCCTCTTCTT CCAAGGAATGGCTCAGCTCCCTCCGCCCCTCCAAAAACCCCACCGCACCTCCTCCGCCCGAACAGGAGGACGACGACGGC CCCCTGGTGGGACCCCCTCCACCTCCCCCATCGCAACAACAACCCGATGACGACGGCGAGATGTTTGGCCCGCCCCCGCC GCCCCCTGCCTCCAATTTCAATGACTCGGACTCCGAACAAGATTCCGATCAAGACGATGTCGGAACCCGGTTCAGAATCC CCCTCAGCAACGAGATTGTTCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCGGTGGATCATTCTGGGTCGAGAGTG CTTTCTGGAAGCTATGATTACACGGTGCGTATGTATGATTTTCAAGGGATGAACTCTCGCTTGCAATCATTTCGACAATT GGAGCCATTCGAAGGCCACCAAGTTCGGAATTTGAGCTGGAGTCCCTCTGCGGATCGGTTTCTCTGCATTACTGGATCAG CTCAAGCTAAGATTTATGATCGTGATGGTCTCACTTTGGGAGAGTTTATGAAGGGAGACATGTATATTCGTGATCTGAAG AATACTAAGGGTCACATTACAGGATTGACATGGGGGGAGTGGCACCCGAAAGCTAAAGAGACCATTTTAACATCTTCCGA GGACGGGTCGCTGCGGATATGGGATGTGAATGACTTCAAGAGTCAGAAGCAGGTTATTAAACCAAAGCTTTCGAGACCTG GAAGAGTTCCTGTGAACACATGTACATGGAATCATGATGGTAAATGCATTGCTGGTGGTATCGGAGATGGTTCTATACAG ATTTGGAATATTAAACCTGGATGGGGGAGTAGGCCAGATATACACATTGAAAAAAGTCATGAGGATGATATTACCGGTCT GACATTTTCTAGTGATGAGAGAATCTTATTATCAAGGAGCTTTGATGGTTCATTGAAGGTATGGGATCTGCGCAAAACAA AGGATGCATTAAAGGTGTTTGAGGATCTGCCAAATAACTATGCACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTC TTTTTTACTGGAACATCTGTTGAAAGGGAGAGCACCACGGGAGGTTTATTGTGCTTCTTTGATAGATTAAATCTTGACCT TGTTTCTAGAGTTGGCATTGCCCCGACTTCTAGTGTTATTCGGTGTTCTTGGCATCCCAAACTGAATCAGATCTTTGCAA CTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCATCAGCGAGAAAGGAGCTCTTGTTTGCGTT GCACGGGCACCAAGGAAAAAATCAGTTGATGACTTCGAAGCAAAACCTGCAATTCATAATCCTCATGCCTTACCGCTGTT CAGAGATCAGCCAAGCCGCAAGCGTCAACGAGAGAAAATTTTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCCA TGAATGGACCTGGCTTTGGTGGGCGAGTTGGTACCAGTCAAGGAAGCTTGCTCACCCAGTATCTACTAAAGCAAGGGGGT ATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATTCTAAAATATGCTGATGTTGCTAAAAAGGATCCAAA GTACATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCTGTGTATGCGAAGTCAGATTCTGAGGATGAAGAGAAATGA
Protein sequence (LotjaGi1g1v0702900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDGEIYDGARAQFPLSFGKQSKSQTPLEAIHNATRRSNSKTTTDFPPVSSSSKEWLSSLRPSKNPTAPPPPEQEDDDG PLVGPPPPPPSQQQPDDDGEMFGPPPPPPASNFNDSDSEQDSDQDDVGTRFRIPLSNEIVLKGHTKVVSALAVDHSGSRV LSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQVRNLSWSPSADRFLCITGSAQAKIYDRDGLTLGEFMKGDMYIRDLK NTKGHITGLTWGEWHPKAKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLSRPGRVPVNTCTWNHDGKCIAGGIGDGSIQ IWNIKPGWGSRPDIHIEKSHEDDITGLTFSSDERILLSRSFDGSLKVWDLRKTKDALKVFEDLPNNYAQTNIAFSPDEQL FFTGTSVERESTTGGLLCFFDRLNLDLVSRVGIAPTSSVIRCSWHPKLNQIFATVGDKSQGGTHILYDPTISEKGALVCV ARAPRKKSVDDFEAKPAIHNPHALPLFRDQPSRKRQREKILKDPLKSHKPELPMNGPGFGGRVGTSQGSLLTQYLLKQGG MIKETWMEEDPREAILKYADVAKKDPKYIAPAYAETQPEPVYAKSDSEDEEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 128 | 128 | - | – | |
| PANTHER | 9 | 611 | 603 | 8.8E-245 | – | |
| MobiDBLite | 18 | 64 | 47 | - | – | |
| MobiDBLite | 65 | 112 | 48 | - | – | |
| Gene3D | 91 | 226 | 136 | 7.1E-12 | ||
| SUPERFAMILY | 114 | 457 | 344 | 9.34E-53 | ||
| SMART | 134 | 173 | 40 | 2.3E-6 | ||
| Pfam | 139 | 173 | 35 | 1.6E-4 | ||
| CDD | 140 | 459 | 320 | 1.46068E-40 | – | |
| ProSiteProfiles | 141 | 182 | 42 | 11.712 | ||
| ProSiteProfiles | 141 | 378 | 238 | 26.841 | ||
| SMART | 183 | 220 | 38 | 6.4 | ||
| Gene3D | 227 | 470 | 244 | 6.5E-35 | ||
| SMART | 232 | 275 | 44 | 0.17 | ||
| Pfam | 240 | 275 | 36 | 0.0015 | ||
| ProSiteProfiles | 242 | 284 | 43 | 10.976 | ||
| ProSitePatterns | 262 | 276 | 15 | - | ||
| PRINTS | 262 | 276 | 15 | 7.6E-6 | ||
| SMART | 285 | 323 | 39 | 0.31 | ||
| Pfam | 297 | 323 | 27 | 0.044 | ||
| ProSitePatterns | 310 | 324 | 15 | - | ||
| PRINTS | 310 | 324 | 15 | 7.6E-6 | ||
| SMART | 330 | 369 | 40 | 8.0E-5 | ||
| Pfam | 337 | 369 | 33 | 0.0017 | ||
| ProSiteProfiles | 337 | 378 | 42 | 14.485 | ||
| PRINTS | 356 | 370 | 15 | 7.6E-6 | ||
| MobiDBLite | 503 | 533 | 31 | - | – | |
| MobiDBLite | 508 | 529 | 22 | - | – | |
| MobiDBLite | 590 | 612 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0702900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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