Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0704800 |
| Transcript ID | LotjaGi1g1v0704800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine-rich repeat secretory protein; TAIR: AT5G43980.1 plasmodesmata-located protein 1; Swiss-Prot: sp|Q8GXV7|CRR56_ARATH Cysteine-rich repeat secretory protein 56; TrEMBL-Plants: tr|I1JP70|I1JP70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127291507..127294709) extracted from Lotus japonicus Gifu genome v1.2.
TCAATAGTCACCATTAAGTAACCTTTCTTTATGAACAAGTTTACATTTTAAACCACAATAATAACAATCACTTAATCAAT CCCCAGTTTTTAATTAATCCACCCATAATTAAATCGTACTACACTTTATATAGATCATTAATTAACAATTCAAGATGATC ATCAATCATGCTAGTTTTCATTTTAAGGTAAAAAGACCCATTTCTTAATGATATCTCTTACACTTAAGCAATAATCACCC ATGACTTAAGTATTATAATTTGCTCTATCAAAGTTGAGAAAAGATACAATGTGACGACCGATTGTGAATACATGCTGACT CAATTTATAAGAGCAACAGTAATAAAAAATGTGCTGATGAAAGATCTAGAATACATTTGTAATGGTGACCGGAGCTGAAC CCGTCCGAAATTTCAACACAAGAAAGCAATGTGACAAGTGACAGGTAGGTTGCATATAAAACCGAAAACAAACACCAAAA ACAACCCTGAATAGCCTTCTAGAAATCAGAGAGAAAAATATTAAAAAACAGAGAAAAGCTTTGCTTTCTTTTCCAACAAT CTCCAAAATGGGAATACTCAGAACAAAACGCTTCACTCTCCAATTTCTGAAGCCCTTTCTCTTCATGCTCATCGTTCTTG GTCCTACCACCGCACCAACCTCAGCTGCTGATTACACCACCCTGGTCTACAAGGGTTGTTCACAGCAGAAGCTTCAAGAT GGGAACTCCGACAATCTCAAAACGCTGCTATCTTCTCTGGTCGCCGAGTCAGGGCAAAAGGGTTTCGCCGCCATAACCGC CGGGAACGCTGTCTCCGGCGCGTACCAATGCAGGGGTGACCTGTCAAACTCCGACTGCCACTCCTGCGTCAGCGAGATTT CCAACTCGCTCGGCCGACTCTGCGGTGGCGGTGACGTGGCGGCGGCGCGGGTTCAGCTCAGCGGGTGTTATCTCAGGTAC GAGGATGTCGGGTTCAAGCAGGTGTCGCAGGATCAGCTGCTGTACAAGGTGTGTGGCTCCAGGAAGGTGGTTGACGGCGG CGGGTTTGAGGCTAGGAGGGATGCGGCGTTTGTGATGGTGGAGAATGGGTTGAAGATCGGTGGGGGTTTGTTCTACACGG GGAGTTATCAGTCTCTGTATGTGCTAGGGCAATGTGAGGGGAATTTGGGAAGTGATGATTGTGTTGCTTGTGTGAAGAGT GCTGAGGATGTTGCTAAAGCTCAGTGTGGTGATTCGATTTCTGCACAGGTTTATCTGTATAGCTGCTATATCAGTTATAG CTTTTACCCTAATGGAGTTCCCACCATCGCATCTTCTTCTCCAGGTAGCAATGGAGGTTAATAATTATCAATTTGCCTTG TTTGCACATGTTTTCCTTCTCAGCCTTTGATTATTAGAAGATATACCATGTTTGAATCACTTTCCCTTTTATTGGAATCA ATTAAGCTACTTTCCAAATTTGATTTTAGTTTCAGAATCAATTATATGAGAGTTTCCAAACATGCAATCAGAATTCTTTC ATCCCCAGATATCTTAAGAAAAAGGGGGAAAGTCAATTATTGATGTTACTTTTTAATGGTTGAGAAGATGCTTTGGAATC ATTCTAGATTCGATTCGAAAGTCTTAATCGTAATCGATTCTATGTAGAAGCTTGTGCGAGTAGCTTTTGATTCTAGAATT GATTCCGAGTAAAAAGAAGTTGATTGAAGCATGCTTGTTATGTGAAGTATGGTATAGAAGTTGTTTTTTGTCTGGTTGAT TTAAATATTGGGCCAAATGCCATTAGGGATTTGTGAAGTGGGGTTGGGGAAGGGATTTGTTGGATCTGGGTAGGTGGGTC TTTTCTTTTAGGAAGATTTGGACCTGTGGTTAGTGGTTGTTTGTTTATTGTAGCATATAATTGCATCTTTGTAATCAATT CTGACACCCGAAGCTACTCACATAAGCTTTTCTTGAAGATTGATTTTTGCTTCAGAATTGACTGAATTTTGTGTTTTGAT TGGATTAGGCGGGCATCAACACACTTCCAGGACAGTGGCTATTGCAGTGGGAGGTGTTGCAGCTTTTGGATTCTTGATTG TTTGCTTGATGTGTCTCAAGTCAGTGTTGAAGAAAAGAAGTGGTAGCAAGTATTGAGGCTGAATCTGGATTGTATATACC TCAAGGATTCAATGATGCATAGATCTAGTTTTGACATCTTAGTTGGTGAATGAATATACCTTATGCCTTTGTATAGCTCT GCTCAAAGGGGATTAAAGTGAAATTCTTGTTTAGTGAATGAATCCGATTTGTGGTAGGTATGAATGGGGAGTTTGAAACA GAAGTTTATTGGCTGGTGTGTGATGGATTTCTGTCCCCACCATATGACTTTTAACAAATGAGAATATGAGATCACACCTT TATTTTTAGGGAGCTTTCTCGTTCGGGGTATGTAGACCCCTCTGATTCTTTATCGCCCTTGTTTCTTTACTTGCCAATTG CCATGCATATCCTCTTCCAAATCTGCATCATGTGTGTATCTCATAGGTGGCAACACAGGGGAAATTGAAGGTGGAATCAA AAAATTCATAAGGTATCCAAATCCTTCCAAGTGCATGTTTGCAAAACTATCTACAATTGATAAAAAACTAACATTTGATG AAAATCTTACATTGGTTTTCCTTATGTGTGAGAAAATGCATTCATAGAGGTTAGAGGATAAATGTAATGTATAGAAGTTT GCATTCCCAGTAGAATTTTATCATTGGATACCTCTTTGTGACTTTGTGACTATAGTGCATGTTTGGATACACAGTAGAAA GCTTCACTACTAGCAAAATCATTTATTTCTATCTACCATTGTTTTGGTCCGCTAGGATTTTCTACCATGTATTAGAACAT GCACAGAGTAGATTGTTAACGGGCGTGCAATTTTTCTTAGTTATCAAGAAATGAGAAGTGCTTTTAAAAGGTGTAACCAG ATTATATGTTGGACCATGAAACCTTTCTCCCTTTTATGCGCGTAATAAGTCACTAGAAAAACATCAAGCATTAAAAGAAA AAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGGGGGTGAAAACCAAATCAACAACATTATGTAAGATGTAATG TCCACTAGAAATAAAAGGAAGGTGGTGGGAAAATATCCATCAACCACTCGCAAATGAAATTAAAATTAGCAACTTAAACT TGT
CDS sequence (LotjaGi1g1v0704800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATACTCAGAACAAAACGCTTCACTCTCCAATTTCTGAAGCCCTTTCTCTTCATGCTCATCGTTCTTGGTCCTAC CACCGCACCAACCTCAGCTGCTGATTACACCACCCTGGTCTACAAGGGTTGTTCACAGCAGAAGCTTCAAGATGGGAACT CCGACAATCTCAAAACGCTGCTATCTTCTCTGGTCGCCGAGTCAGGGCAAAAGGGTTTCGCCGCCATAACCGCCGGGAAC GCTGTCTCCGGCGCGTACCAATGCAGGGGTGACCTGTCAAACTCCGACTGCCACTCCTGCGTCAGCGAGATTTCCAACTC GCTCGGCCGACTCTGCGGTGGCGGTGACGTGGCGGCGGCGCGGGTTCAGCTCAGCGGGTGTTATCTCAGGTACGAGGATG TCGGGTTCAAGCAGGTGTCGCAGGATCAGCTGCTGTACAAGGTGTGTGGCTCCAGGAAGGTGGTTGACGGCGGCGGGTTT GAGGCTAGGAGGGATGCGGCGTTTGTGATGGTGGAGAATGGGTTGAAGATCGGTGGGGGTTTGTTCTACACGGGGAGTTA TCAGTCTCTGTATGTGCTAGGGCAATGTGAGGGGAATTTGGGAAGTGATGATTGTGTTGCTTGTGTGAAGAGTGCTGAGG ATGTTGCTAAAGCTCAGTGTGGTGATTCGATTTCTGCACAGGTTTATCTGTATAGCTGCTATATCAGTTATAGCTTTTAC CCTAATGGAGTTCCCACCATCGCATCTTCTTCTCCAGGCGGGCATCAACACACTTCCAGGACAGTGGCTATTGCAGTGGG AGGTGTTGCAGCTTTTGGATTCTTGATTGTTTGCTTGATGTGTCTCAAGTCAGTGTTGAAGAAAAGAAGTGGTAGCAAGT ATTGA
Protein sequence (LotjaGi1g1v0704800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGILRTKRFTLQFLKPFLFMLIVLGPTTAPTSAADYTTLVYKGCSQQKLQDGNSDNLKTLLSSLVAESGQKGFAAITAGN AVSGAYQCRGDLSNSDCHSCVSEISNSLGRLCGGGDVAAARVQLSGCYLRYEDVGFKQVSQDQLLYKVCGSRKVVDGGGF EARRDAAFVMVENGLKIGGGLFYTGSYQSLYVLGQCEGNLGSDDCVACVKSAEDVAKAQCGDSISAQVYLYSCYISYSFY PNGVPTIASSSPGGHQHTSRTVAIAVGGVAAFGFLIVCLMCLKSVLKKRSGSKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 33 | 33 | - | – | |
| SignalP_EUK | 1 | 33 | 33 | - | – | |
| PANTHER | 10 | 291 | 282 | 5.0E-117 | – | |
| PANTHER | 10 | 291 | 282 | 5.0E-117 | – | |
| Phobius | 17 | 25 | 9 | - | – | |
| Phobius | 26 | 33 | 8 | - | – | |
| Phobius | 34 | 261 | 228 | - | – | |
| ProSiteProfiles | 35 | 136 | 102 | 15.077 | ||
| Gene3D | 36 | 136 | 101 | 1.4E-18 | ||
| Pfam | 54 | 133 | 80 | 2.4E-14 | ||
| Gene3D | 140 | 241 | 102 | 1.0E-12 | ||
| ProSiteProfiles | 142 | 242 | 101 | 14.552 | ||
| Pfam | 186 | 239 | 54 | 8.5E-8 | ||
| Phobius | 262 | 286 | 25 | - | – | |
| TMHMM | 264 | 286 | 23 | - | – | |
| Phobius | 287 | 294 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0704800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…