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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0711400 |
| Transcript ID | LotjaGi1g1v0711400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Deoxyhypusine hydroxylase; TAIR: AT3G58180.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q94JW0|DOHH_ARATH Deoxyhypusine hydroxylase; TrEMBL-Plants: tr|V7D020|V7D020_PHAVU Deoxyhypusine hydroxylase; Found in the gene: LotjaGi1g1v0711400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127964547..127967229) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCCGTAAAAAATAAATAATCTCTAAATTAATTTTTAATTCAAAAGTTCATCTTTATATATAGTTTTTATATTTACAA AAAGTACCCTAATAAGTAATAATAACCACCACCGCCTCTACTAGATACGGAGTGAACGAAAAGAAAGGGAAAACAGCAGC ACCTAAGTACGCCGTATCGGATTCGGTGGTCGTCCACCGTAGAAGGTGGAGGAGGAAAGGACCATCATCTCTCACAGTAA CCATGGACTCCGCAAACGCCGCCGCTTTGGGCTCGCCGGAGATGGAAAAATTCCTCTGCGAATTATTGCTCGACTCAACC CAACCCATCTCCGAGCGCTTCAGAGCCCTCTTCTCCCTCCGCAACCTCAAAGGTCCCGCCCCTCGCAACGCCCTTATACT CGGTCAGTCACTCATCTTTCTTCTCAACCCTCAACCACTTCTCTGTTCTTCATCACCTTGATACGATTCAATTTTCCTTG TTCAGCTACTAGGGATTCATCGAATTTGCTGGCTCATGAAGCTGCATTCGCGTTAGGTCAAATGCAAGAATCGGAAGCGG TTCCTGCTTTAGCTTCACTTCTCAATGATCTTTCTTTGCATCCAATCGTTCGCCATGAAGCAGCTGAAGCACTCGGTGCG ATTGGTTCACAGGGTAATCTTCCTCTGTTGAAGAATAGCTTGGATTCTGATCCTGCTCCGGAGGTTCGCGAAACGTGTGA ATTGGCTCTTCAACGGATTCATCATGCTGGGAACACTGATGATTCGTCTTCAACTGATGTTTCTCCCTTTAAGTCTGTTG ATCCTGCAGCACCAGCCACATCTGGTTCTTCTGTTGGTGAACTAAGGTTTGATACTTTGATTGGTTCGCACGTCGTCTCG TGTTAGTTCAAATGTGAATTGTAGTTTGCTAATTTGTGTTAATCAATGTTAGGGATGTGCTGCTTGATGAGGAGAAAGGG ATGTATGAGCGCTATGCAGCTCTCTTTGCGCTTCGAAATGAGGGTGGGAATGAAGCTGTTGCTGCTATTGTTGATTCATT GGGCTCGAAAAGTGCTCTACTGCGACACGAGGTTTGATGATCATGCTCTTGTTTATGTATACTTTATCTGCATTCAATAT GGTTATATGAATGGTAGATGATAAGTTATACATTTCACTCGAAACCACACAAGGCTCGATCTAAAGGGATACACAGTGAT ACGCTAGCCGTTTTTTGAAACGAGTATTTTACATAGCTTGTGCTTACGTATAATAGGAACATGATAAAAGAAATCTAAAC ATGATCATATTAAATGAATGTTTTAAGGACATGGTTTTAGTTTGTGCACACCTGTTTGAATCTCTTAAGGCCAATGTTTT CTGTGATCTCTAGGTTGCATATGTTTTGGGCCAATTGCAAAATAAAGCTGCTTCAGCTGCTCTATCCAATATACTTAGAG ATGTGAATGAGCACCCGATGGTTAGACACGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGGTATTAGTATTACTACAAAA TATTGTTGAATGGTGTGATCTCTTTTGATCTCTTCGGAAGTGGTTTTCTTTCAATCTATGACAAGTCCAAAATATATGCT AAATTTGTGTTCAGTTTACAGAGTTCTTGTGTGAAACTTCATTTAACCTTAGTCTTTGATAAAATGGTTGTGTTCTACTG AGCTATGTGACAGAAGATAGTTGACTACTTAACCTGTTAACCATTTCTTGCTATTCGTGTGCAAACTACAAAGCATTTAA ATCTCCAAGTTCACATATTAGATTGTTTACTTAATTGTTTTGTTATATGTCCTTAGATGACCAAAGTGTAGCCCTTCTTG AGGAGTTTACTGCAGACCCAGAGCCTCTTGTCTCACAAAGTTGTCAAGTAGCTTTAAGCATGCTGGAATTTGAACAATCA GGAAAATCATTTGAGGTATAAACCGTGGTAGTTAGTAGTTACTGAAGATTTGCATTTCTTGCTTCCATGTTTGTTGACAC TTGGCACAACTTTTTTTCGTGGTTGCAGTTCCTGTTCATGCGCACTCCAGCTGTGCATTAAGTGTTTTCTCATGGTGATG CCTTTCAATAATGCCAAGATAGAAGGAATGAATAGATGCATGTGAATGAAGAGAAATTGATCCTGACATATATACACACA CACAGCGAGCAACTGTTGTATTTCTTACTCTCCGTAATGAAACATGAAACAATAGCTTTATATAAACATGAGTTTATGCT AAGTTATCGAAATAAACATTTTGTGATGAACTGGAAGCTTTTTATTGTTGCTCAAATGTCCAATTTATGTCTGTTGGCAT GGGAAGTCTAAGCTTAAAGCTGGCTGAAATGGGAAGCCCAAGCTTAAAGGTTAGACCTTTGGAAGGTTTGGCAATTGGCA TGTTTACTTGATAACATGGTTGCTAAGTGCTGACTTAATGGTAAGACTAAAGAAAGATTGAGAAGAGATTGAAAATATTG ATTTTTCTCCCCATATGATCGGTGTTCATGGTTGAAAAAGGCAAATCATGATAAAGTTAAAAGTCCACCAGGCTTCTGGA TTTAGCCTTGAATATTGACATCTCATCATGAACGATTAGATTGATATACCATTATTGCCGTGAAAAGGAATTGAGGTTGC TCGTTAGTTTCTTGACCACCTAGTCTGAAGGAGTGACTATCAG
CDS sequence (LotjaGi1g1v0711400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCGCAAACGCCGCCGCTTTGGGCTCGCCGGAGATGGAAAAATTCCTCTGCGAATTATTGCTCGACTCAACCCA ACCCATCTCCGAGCGCTTCAGAGCCCTCTTCTCCCTCCGCAACCTCAAAGGTCCCGCCCCTCGCAACGCCCTTATACTCG CTACTAGGGATTCATCGAATTTGCTGGCTCATGAAGCTGCATTCGCGTTAGGTCAAATGCAAGAATCGGAAGCGGTTCCT GCTTTAGCTTCACTTCTCAATGATCTTTCTTTGCATCCAATCGTTCGCCATGAAGCAGCTGAAGCACTCGGTGCGATTGG TTCACAGGGTAATCTTCCTCTGTTGAAGAATAGCTTGGATTCTGATCCTGCTCCGGAGGTTCGCGAAACGTGTGAATTGG CTCTTCAACGGATTCATCATGCTGGGAACACTGATGATTCGTCTTCAACTGATGTTTCTCCCTTTAAGTCTGTTGATCCT GCAGCACCAGCCACATCTGGTTCTTCTGTTGGTGAACTAAGGGATGTGCTGCTTGATGAGGAGAAAGGGATGTATGAGCG CTATGCAGCTCTCTTTGCGCTTCGAAATGAGGGTGGGAATGAAGCTGTTGCTGCTATTGTTGATTCATTGGGCTCGAAAA GTGCTCTACTGCGACACGAGGTTGCATATGTTTTGGGCCAATTGCAAAATAAAGCTGCTTCAGCTGCTCTATCCAATATA CTTAGAGATGTGAATGAGCACCCGATGGTTAGACACGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGATGACCAAAGTGT AGCCCTTCTTGAGGAGTTTACTGCAGACCCAGAGCCTCTTGTCTCACAAAGTTGTCAAGTAGCTTTAAGCATGCTGGAAT TTGAACAATCAGGAAAATCATTTGAGTTCCTGTTCATGCGCACTCCAGCTGTGCATTAA
Protein sequence (LotjaGi1g1v0711400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSANAAALGSPEMEKFLCELLLDSTQPISERFRALFSLRNLKGPAPRNALILATRDSSNLLAHEAAFALGQMQESEAVP ALASLLNDLSLHPIVRHEAAEALGAIGSQGNLPLLKNSLDSDPAPEVRETCELALQRIHHAGNTDDSSSTDVSPFKSVDP AAPATSGSSVGELRDVLLDEEKGMYERYAALFALRNEGGNEAVAAIVDSLGSKSALLRHEVAYVLGQLQNKAASAALSNI LRDVNEHPMVRHEAAEALGSIADDQSVALLEEFTADPEPLVSQSCQVALSMLEFEQSGKSFEFLFMRTPAVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 303 | 301 | 1.1E-83 | – | |
| Gene3D | 3 | 151 | 149 | 2.7E-19 | ||
| PANTHER | 3 | 303 | 301 | 1.1E-83 | – | |
| SUPERFAMILY | 11 | 139 | 129 | 5.47E-12 | ||
| Hamap | 15 | 302 | 288 | 32.336 | ||
| SMART | 29 | 58 | 30 | 2.5 | ||
| Pfam | 50 | 135 | 86 | 1.8E-17 | – | |
| SMART | 60 | 89 | 30 | 7.5E-5 | ||
| SUPERFAMILY | 93 | 291 | 199 | 1.73E-26 | ||
| SMART | 93 | 122 | 30 | 6.3E-4 | ||
| MobiDBLite | 142 | 169 | 28 | - | – | |
| Gene3D | 161 | 302 | 142 | 3.9E-19 | ||
| SMART | 184 | 213 | 30 | 0.27 | ||
| Pfam | 215 | 289 | 75 | 7.3E-11 | – | |
| SMART | 215 | 244 | 30 | 8.3E-4 | ||
| SMART | 248 | 277 | 30 | 1.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Peptidyl-lysine modification to peptidyl-hypusine | The modification of peptidyl-lysine to form hypusine, peptidyl-N6-(4-amino-2-hydroxybutyl)-L-lysine. | ||
| Molecular function | Deoxyhypusine monooxygenase activity | Catalysis of the reaction: protein N6-(4-aminobutyl)-L-lysine + donor-H2 + O2 = protein N6-((R)-4-amino-2-hydroxybutyl)-L-lysine + acceptor + H2O. |
Expression pattern of LotjaGi1g1v0711400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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