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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF13646
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.019s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3975340.1
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502107149|ref|XP_004493173.1| chr1 46819765 46831546 -
1 domain prediction
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Lj1g3v3975340.2
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502107149|ref|XP_004493173.1| chr1 46825148 46831546 -
1 domain prediction
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Lj1g3v4483390.1
n.a. PREDICTED: deoxyhypusine hydroxylase-like [Glycine max] gi|356504995|ref|XP_003521278.1| chr1 52482978 52484969 +
1 domain prediction
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Lj2g3v0742070.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356520585|ref|XP_003528942.1| chr2 11733369 11742399 +
1 domain prediction
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Lj2g3v1155670.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356499699|ref|XP_003518674.1| chr2 18333487 18339185 +
1 domain prediction
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Lj4g3v2604270.1
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502140730|ref|XP_004504314.1| chr4 35157273 35165829 +
1 domain prediction
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Lj4g3v3113810.2
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Glycine max] gi|356524636|ref|XP_003530934.1| chr4 41768141 41771529 +
1 domain prediction
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Lj5g3v2217170.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like isoform X1 [Cicer arietinum] gi|502120866|ref|XP_004497109.1| chr5 31915139 31921893 +
1 domain prediction
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LotjaGi1g1v0643800.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A5XEM2|A5XEM2_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi1g1v0643800 LjG1.1_chr1 120112733 120124670 -
1 domain prediction
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LotjaGi1g1v0711400.1
n.a. Deoxyhypusine hydroxylase; TAIR: AT3G58180.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q94JW0|DOHH_ARATH Deoxyhypusine hydroxylase; TrEMBL-Plants: tr|V7D020|V7D020_PHAVU Deoxyhypusine hydroxylase; Found in the gene: LotjaGi1g1v0711400 LjG1.1_chr1 127964547 127967229 -
1 domain prediction
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LotjaGi2g1v0210500.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756005 65764457 +
1 domain prediction
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LotjaGi2g1v0210500.2
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756422 65763590 +
1 domain prediction
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LotjaGi2g1v0210500.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756425 65762988 +
1 domain prediction
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LotjaGi2g1v0210500.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756431 65763590 +
1 domain prediction
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LotjaGi2g1v0278900.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75033918 75040553 +
1 domain prediction
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LotjaGi2g1v0278900.2
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034447 75039764 +
1 domain prediction
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LotjaGi2g1v0278900.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.2 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034450 75039345 +
1 domain prediction
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LotjaGi2g1v0278900.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034456 75039764 +
1 domain prediction
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LotjaGi4g1v0376600.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|I1KSC8|I1KSC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0376600 LjG1.1_chr4 75562541 75569098 +
1 domain prediction
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LotjaGi4g1v0376600.2
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A0A151TKV1|A0A151TKV1_CAJCA Importin-5; Found in the gene: LotjaGi4g1v0376600 LjG1.1_chr4 75563243 75566548 +
1 domain prediction
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LotjaGi4g1v0376600.4
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O74476|IMB3_SCHPO Importin subunit beta-3; TrEMBL-Plants: tr|A0A151TKV1|A0A151TKV1_CAJCA Importin-5; Found in the gene: LotjaGi4g1v0376600 LjG1.1_chr4 75563920 75565318 +
1 domain prediction
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LotjaGi4g1v0459700.1
n.a. 26S proteasome non-ATPase regulatory subunit 1; TAIR: AT2G32730.1 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; Swiss-Prot: sp|O48844|PSD1A_ARATH 26S proteasome non-ATPase regulatory subunit 1 homolog A; TrEMBL-Plants: tr|I1KQE8|I1KQE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0459700 LjG1.1_chr4 83051345 83058046 +
1 domain prediction
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LotjaGi4g1v0459700.2
n.a. 26S proteasome non-ATPase regulatory subunit 1; TAIR: AT2G32730.1 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; Swiss-Prot: sp|O48844|PSD1A_ARATH 26S proteasome non-ATPase regulatory subunit 1 homolog A; TrEMBL-Plants: tr|I1KQE8|I1KQE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0459700 LjG1.1_chr4 83051515 83057343 +
1 domain prediction
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LotjaGi5g1v0341300.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65862419 65870375 +
1 domain prediction
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LotjaGi5g1v0341300.2
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65863048 65868877 +
1 domain prediction
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LotjaGi5g1v0341300.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65863051 65868811 +
1 domain prediction
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LotjaGi5g1v0341300.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65863057 65868877 +
1 domain prediction
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LotjaGi6g1v0018000.1
n.a. Protein kinase; TAIR: AT1G50240.2 kinase family with ARM repeat domain-containing protein; Swiss-Prot: sp|Q2QAV0|TIO_ARATH Serine/threonine-protein kinase TIO; TrEMBL-Plants: tr|V7BHY5|V7BHY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0018000 LjG1.1_chr6 3132202 3152648 -
1 domain prediction
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LotjaGi6g1v0018000.2
n.a. Protein kinase; TAIR: AT1G50240.2 kinase family with ARM repeat domain-containing protein; Swiss-Prot: sp|Q2QAV0|TIO_ARATH Serine/threonine-protein kinase TIO; TrEMBL-Plants: tr|I1LAE0|I1LAE0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0018000 LjG1.1_chr6 3133387 3152466 -
1 domain prediction
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LotjaGi6g1v0018000.3
n.a. Protein kinase; TAIR: AT1G50240.2 kinase family with ARM repeat domain-containing protein; Swiss-Prot: sp|Q2QAV0|TIO_ARATH Serine/threonine-protein kinase TIO; TrEMBL-Plants: tr|K7LIU4|K7LIU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0018000 LjG1.1_chr6 3133387 3152466 -
1 domain prediction
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