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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0714200 |
| Transcript ID | LotjaGi1g1v0714200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Threonine dehydratase; TAIR: AT3G10050.1 L-O-methylthreonine resistant 1; Swiss-Prot: sp|Q9ZSS6|THD1_ARATH Threonine dehydratase biosynthetic, chloroplastic; TrEMBL-Plants: tr|A0A0L9TWQ1|A0A0L9TWQ1_PHAAN Threonine dehydratase; Found in the gene: LotjaGi1g1v0714200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128237007..128242493) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGTGCAAAAACATGAATGTCTACCTAAGATCCTGACAACAAATGTCAAATGGAAGAAGATTCTGTATCCATTGACA TCAATGCAGATCCAAGGTTTCATAGGACAAACAAAGAATCTGTATCAGCAATGCAGAAAATAAATGCATATATAACTTCA ACACAAATTGGAATTGGATTTCAATCTAGTATCACTATTCACAACCCACCATGGCGGCGCTGCGATTCTCCACCACCACT CACCCACACCACCCATCGCCACCACCGCTCCTCCGCCGCCACGCTTTCCACAAAATGCCCACCAACGTGCTTCACCCCAA CCCTCGCCGCAAACCCTTCATCGCCGCCACCATTTCCAAGCCGGCAGAGATAACACCTTCACCCTCTTCTTCTTCCGCTG CTGTCGGAGATCATTTGTCGTCTCCTCGCCTCAGGGTCTCACCCGATTCGCTTCAGTACGAGCCCGGCTACCTCGGGGCC GTCCCGGACCGGTCACGCTCCGATGGCGGCAGCGACAGCGACGCCATGCTCACCGCCATGGCCAATATACTCTCTGCGAA GGTTTATGATGTCGCCATTGAGTCCCCTTTGCAATTGGCGCCAAAGCTTTCTGAAAGAATTGGGGTTAACCTTTGGCTCA AGAGGGAGGATTTGCAACCCGTGAGAACTCCTCACACATCATTACCTTTCTTTGTTATCTAGTTTTGATTTTGATGTGAT TTGCACGGATTGTGTTTGTGATTTTGTCACATTGAACCAAATTGACTGTGAAGTTTAATGACCCTTTCTGGTTTAGTCAG TGAGATTGAGAGTTAATCATAGAACTGTTTGATTGAATATTTGAAGCTCTGGATTGTTGTTGCATATTCCAGGTTTTCTC ATTTAAGCTCCGAGGAGCTTACAATATGATGGTTAAACTTCCAAAGGAGCTCTTGGAAAAAGGGGTTATCTGCTCATCAG CTGGAAATCATGCTCAGGGAGTTGCATTAGCTGCCAAGAGATTGAATTGCAATGCCGTGGTTGCAATGCCCGTTACCACT CCAGATATTAAGGTGCTTGTTAATGTTCTTTATTTCTTGTTAAAAATTGTCTTCAATAAGAGAACCTGGTCAATTAAGTT ATGTGTTTTCATGTCTTTTAACTTTACAGTGGAAATCTGTGGAGAAGCTGGGTGCGACAGTTGTCCTTATTGGGGATTCA TATGATGAGGCACAAGCATATGCTAAGAAGCGTGGAATAGAGGAGGGTCGTACATTCGTACCTGCTTTTGATCATCCTGA TGTCATCATGGGTCAGGGAACAGTTGGGATGGAAATTATGCGCCAAATGGTGGATCCAGTGCATGCGATCTTTGTGCCAG TGGGAGGTGGTGGTCTCATTGCCGGTATTGCTGCTTACGTGAAGACGGTTTCTCCACAGGTTTAAATAGATTTTTTGTTA ATAGTTTTTTTTTTCTTTTTCATTTTGTGTGTGTTCCTTCATTTAGAAAAATGACTATTGACATCTATTACAAATACATA GGTGAAGATCATTGGTGTGGAGCCTACTGATGCCAATACAATGGCATTGTCACTACATCATGACCAAAGAGTGATTTTGG ACCAGGTTGGAGGATTTGCAGATGGTGTGGCTGTTAAAGAGGTTGGTGAAGAAACTTTTCGCTTATGCAAGGACTTGATA GATGGCGTTGTACTTGTAAACCGTGATTCAATATGTGCATCAATAAAGGTAAGATGCCCCTTTCCTTGTGAAAGATTTCA TTCAAAATTCCCAATGGATTTTCTTTCGTATTATGAGTTTGAGTTGAGCCTAGTGTCTTCTGAGCGAATGTTCTATAATT GAGAAAATTCATTGTATCTTATCAGGTCAAATGAACATATATATATATATATATTTTGTACTCTAGAGTAGTGTGGAGAT GCTTTGCTTAAGCTAATTGTTCTGGTACTGAATTGAATCTTCATTGTTATCTAATGTTATTGACAGCTGATAATTGTCCG AAGTTTAAGTGCAAAGTAATTGAATTAATTAACAATTGAGATTTGCTTGATAATTGATAAACTTGTGAGTCAGCAATAAT GTCAAATTTCAAATTGGTTGTTGGAGGAGTATCTGGTTGTTAGATAAACTGAGCTGTTCATTTCACTCTACTTTTATAGG CTGTCTGCTTTATTGTAGACATTTTGTGCACATGCAGTTTAGTTCCTGAGTTATTATTGGTTAAGATTGTTTGTACCAAT GAGAATTCGGACTTAATTGACTGCATAGAATGTCTTATATATTGGATAGAAAGCATAGCAGAATCTTTGACTTAAACTTT TTGGATATGATAATAGTAAAACTTGTTGCAGGACATGTTTGAGGAAAACAGGAGCATATTGGAACCATCTGGTGCTCTTG CTCTTGCTGGAGCTGAGGCATACTGCAAGTATTATGGGATCAAGGGGGGAAATGTTGTAGCAATAACTTCCGGGGCAAAC ATGAATTTTGATAAACTTCGGGTGGTAACTGAACTTGCTAATGTTGGTCGTAAACAGGAGGCTGTGCTGGCAACTGTTAT GCCAGAGGAGCCAGGCAGTTTCAAACAGTTTTGTGAATTGGTATGTATATACTACTTTGACTGCCTCCCCCCTAAAAATA GAGTTCTTCATAGTTTAATTGATTTTCTTCTGGCTTGGCAGGTAGGGCAGGCCAATATCACGGAATTCACATACAGATTT ACTTCCAGCGACAAAGCTGTTGTCCTTTACAGGTAAGATTATAACAATAAACGCCTTATCTTTTTTAATAATTTTAAAAT AATGGCTTAATACATCAGAAGGCCCCTGAAATTGTAAAGGGAATCAGTTTCAGGGCCTGAAAAATTTTCGCATCAAATTG GGTCCCTAAGAATTTTTTTTTAATTCAATTAAGGACAAAGTGTGTCAGACGGTGATGTGACTTCAATTTTAGCCTACTTA GCTTTTCCACATGGCATTTTAATTTATTTTTTAATTAAAAATTTCCAAAACTTAATTTTTTAATTCCAAATCATAAATTT AAAATAAAAACTTAATACAAACCTTAAACTAATCACTAATACTCTCTAATCTTAACCTAATAATCCCAGAATCAGGATCT CCAACCCTAAACTAATCCAATAATATAATTCTGACTGATATTCTCATCTTCTTTCATCCATCGTTTTTTTTTCTCATCTC CTCCTCCTCCTTCTTTTTCTCATCTTTTCCTCCTCAACCTTCTTCTTCTTAACCCAAACCCAGAAATCTTAACCCAATAA TCCCATAATCAGGATCTCCAACCCAAAACCCAAACTAAGAAATCTCAATACAGAAACCTCAAACTCAAGTTAGAATCAAG CTTCTCTCAGGCTCCTTTCTTTGTTCTGATCTCGGATTCAAAGAGAGGAGAGGAAGATCTTCAAGAAAGTACCTTCCTTT ATGAAAAAGGAGGTCGCCGGAGATGACGACCGGAGACGGCGGTCAGTGGCGGAGTAGCGGCGGCGACAGCAAGGGCCACT GGATCTCCTTCTCCTTGCGACGGCGATCATCAAGGTGGTGATTGAGTGTTCCTGGATGTTGGTGATGTTGGGGATGAAGA TTTTGAAGAGAAAATTTTAGGTTCTAAACCTAGGTTTTGGAAATTAAAAATGGTGGTTCTGGTGGAAATTTTTTAATTTT AGGGTTCTGGTTCGTCGTGATCTTTGATTTGTTGGTAAATTTGTATATGTTTCAATGTGTGAAGAAGGTTATGGTGATGA AGATGATGGGGTTTGGTAGGATTGGAAGCAAATAAGAGTTGATTACTCAGATTTGAGTGGTGAAGGTCTGCTCTTCAACG GTGGTGAGGGCAATTTTGTGCAGTTTTCTTCCCCTGCTTTTCCCCTGTTTTCTTTTTCATGTAATGAAACAAAATTGCAC AAGGTCAATTCAATTTGGGGAAAGATTTGGGTTTGGTAATAATTAGATTATGTTTAGATTATATTATTAGATTAGGTTTT TATTAAGATTTTTAATTTTTTTTTCTGATTATTTTGATGACTTGGTATTAAAAATTATTTTTTTAATATTTTTTAATTAA AAAAAAATTATAAAAGCCAGGTGTCACTGATGACTAGGACAAAATTGAGATTTGGCCTTAATTGAATTAAAAAAAATTTC TTAGGGACCCAATTTGATGCGAAAATTTTTCAGGCCCTGGAACTGATTCCCTTTACAATTACAGGGGCCTTCTGATGTAT TAAGCCTAAAATAATCAATGTTTTCCAGAATATCAACATCTCTCTAGCACAACTTATTTATTTTCAATGAGTTGTTTTAT CTGTGGAAAATATCTGCTAGACAACAAGTCAATGCCTATAATATTTTATTTTGCATTTGTGTGCAGTGTTGGGGTTCACA CAGTCTCAGATCTTAGCGCGATGAAGGAGAGAATGAAGTCTTCTCATCTTAAAACTCATGATCTCACAGAAAATGACTTG GTTAAAGATCACTTACGTTACATGGTATGTTGGGAATGAAGTCCCTTCATAGTGAAGTTTATTGTATCCTTTTCCCTTTT CTCAATACTTTCCCAGCTACCGACTTTATAATACCCCAGCTATTATCTAAACCAATCATTCCTATTCACCAGACACTTGT GATGAGAATTAATGTTGGGTATATTGCACTTTTTTTATATTCCAGACCAAATTAGCTAAGATGTTGAACAACAGTAAGAA ACATGGCATGATTAATAGCTGCTATAATTGATTTGGTTGTCTTTTTGCGATAGTCTTATCAAACATGTCACTCCCACCAC AGTTGAGTACCTGGTCCTATGTTTGTATTCGGTGAGCTTACATTGTTTTGAACACATTTCAGATGGGAGGCCGATCAGAT GTTGAGAACGAGGTACTTTGTCGTTTCATCTTCCCAGAAAGACCCGGAGCTTTGATGAAATTCTTGGACTCCTTCAGTCC ACGTTGGAACATCAGTTTATTCCATTATCGTGGAGAGGTGCGTGTGAATTTCTGACTTTCAATTCCATTTGTCAAGCAAC ATGGGGATGATTTTCTTTCATTTTCGTTTAACCAACTACATGCCTAATGGCGATATCTTTGTACTTTCTGATCAACAGGG TGAGACCAGAGCAAATATCTTGGTTGGAATACAGGTTCCCAGAACTGAGATGGATGAATTCCACGAGCGCGCTAATAGGC TTGGGTATGAATATAAAGTGGTGAATGATGATGATGACTTCCAGCTTTTAATGCATTGATTATCGTAGGCATTTGCCATT AATTATGGTGTATTATATCTTGATTAGAGGAAATAGCACGTTTAACTTGGTGCAGCACTAAGTGCTGTTTCTACAAGGTT TTTTTATGATTATTGGAGATAATTGACATGCCTAGCGTTGTTAATTGGTCGTTTATCTCTATAATACAAACACCCTCGTT TGCTGAATTGCAATTTTTATTTGATAGTCATATCAACATGTTTTATT
CDS sequence (LotjaGi1g1v0714200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGCTGCGATTCTCCACCACCACTCACCCACACCACCCATCGCCACCACCGCTCCTCCGCCGCCACGCTTTCCA CAAAATGCCCACCAACGTGCTTCACCCCAACCCTCGCCGCAAACCCTTCATCGCCGCCACCATTTCCAAGCCGGCAGAGA TAACACCTTCACCCTCTTCTTCTTCCGCTGCTGTCGGAGATCATTTGTCGTCTCCTCGCCTCAGGGTCTCACCCGATTCG CTTCAGTACGAGCCCGGCTACCTCGGGGCCGTCCCGGACCGGTCACGCTCCGATGGCGGCAGCGACAGCGACGCCATGCT CACCGCCATGGCCAATATACTCTCTGCGAAGGTTTATGATGTCGCCATTGAGTCCCCTTTGCAATTGGCGCCAAAGCTTT CTGAAAGAATTGGGGTTAACCTTTGGCTCAAGAGGGAGGATTTGCAACCCGTTTTCTCATTTAAGCTCCGAGGAGCTTAC AATATGATGGTTAAACTTCCAAAGGAGCTCTTGGAAAAAGGGGTTATCTGCTCATCAGCTGGAAATCATGCTCAGGGAGT TGCATTAGCTGCCAAGAGATTGAATTGCAATGCCGTGGTTGCAATGCCCGTTACCACTCCAGATATTAAGTGGAAATCTG TGGAGAAGCTGGGTGCGACAGTTGTCCTTATTGGGGATTCATATGATGAGGCACAAGCATATGCTAAGAAGCGTGGAATA GAGGAGGGTCGTACATTCGTACCTGCTTTTGATCATCCTGATGTCATCATGGGTCAGGGAACAGTTGGGATGGAAATTAT GCGCCAAATGGTGGATCCAGTGCATGCGATCTTTGTGCCAGTGGGAGGTGGTGGTCTCATTGCCGGTATTGCTGCTTACG TGAAGACGGTTTCTCCACAGGTGAAGATCATTGGTGTGGAGCCTACTGATGCCAATACAATGGCATTGTCACTACATCAT GACCAAAGAGTGATTTTGGACCAGGTTGGAGGATTTGCAGATGGTGTGGCTGTTAAAGAGGTTGGTGAAGAAACTTTTCG CTTATGCAAGGACTTGATAGATGGCGTTGTACTTGTAAACCGTGATTCAATATGTGCATCAATAAAGGACATGTTTGAGG AAAACAGGAGCATATTGGAACCATCTGGTGCTCTTGCTCTTGCTGGAGCTGAGGCATACTGCAAGTATTATGGGATCAAG GGGGGAAATGTTGTAGCAATAACTTCCGGGGCAAACATGAATTTTGATAAACTTCGGGTGGTAACTGAACTTGCTAATGT TGGTCGTAAACAGGAGGCTGTGCTGGCAACTGTTATGCCAGAGGAGCCAGGCAGTTTCAAACAGTTTTGTGAATTGGTAG GGCAGGCCAATATCACGGAATTCACATACAGATTTACTTCCAGCGACAAAGCTGTTGTCCTTTACAGTGTTGGGGTTCAC ACAGTCTCAGATCTTAGCGCGATGAAGGAGAGAATGAAGTCTTCTCATCTTAAAACTCATGATCTCACAGAAAATGACTT GGTTAAAGATCACTTACGTTACATGATGGGAGGCCGATCAGATGTTGAGAACGAGGTACTTTGTCGTTTCATCTTCCCAG AAAGACCCGGAGCTTTGATGAAATTCTTGGACTCCTTCAGTCCACGTTGGAACATCAGTTTATTCCATTATCGTGGAGAG GGTGAGACCAGAGCAAATATCTTGGTTGGAATACAGGTTCCCAGAACTGAGATGGATGAATTCCACGAGCGCGCTAATAG GCTTGGGTATGAATATAAAGTGGTGAATGATGATGATGACTTCCAGCTTTTAATGCATTGA
Protein sequence (LotjaGi1g1v0714200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALRFSTTTHPHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSPSSSSAAVGDHLSSPRLRVSPDS LQYEPGYLGAVPDRSRSDGGSDSDAMLTAMANILSAKVYDVAIESPLQLAPKLSERIGVNLWLKREDLQPVFSFKLRGAY NMMVKLPKELLEKGVICSSAGNHAQGVALAAKRLNCNAVVAMPVTTPDIKWKSVEKLGATVVLIGDSYDEAQAYAKKRGI EEGRTFVPAFDHPDVIMGQGTVGMEIMRQMVDPVHAIFVPVGGGGLIAGIAAYVKTVSPQVKIIGVEPTDANTMALSLHH DQRVILDQVGGFADGVAVKEVGEETFRLCKDLIDGVVLVNRDSICASIKDMFEENRSILEPSGALALAGAEAYCKYYGIK GGNVVAITSGANMNFDKLRVVTELANVGRKQEAVLATVMPEEPGSFKQFCELVGQANITEFTYRFTSSDKAVVLYSVGVH TVSDLSAMKERMKSSHLKTHDLTENDLVKDHLRYMMGGRSDVENEVLCRFIFPERPGALMKFLDSFSPRWNISLFHYRGE GETRANILVGIQVPRTEMDEFHERANRLGYEYKVVNDDDDFQLLMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 273 | 273 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 52 | 103 | 52 | - | – | |
| MobiDBLite | 52 | 67 | 16 | - | – | |
| PANTHER | 59 | 605 | 547 | 9.9E-279 | – | |
| TIGRFAM | 110 | 604 | 495 | 5.1E-203 | ||
| CDD | 110 | 414 | 305 | 6.21933E-130 | – | |
| SUPERFAMILY | 113 | 459 | 347 | 3.01E-97 | ||
| Gene3D | 118 | 421 | 304 | 3.8E-139 | ||
| Pfam | 122 | 410 | 289 | 1.1E-77 | ||
| ProSitePatterns | 146 | 159 | 14 | - | ||
| Gene3D | 154 | 250 | 97 | 3.8E-139 | ||
| Phobius | 274 | 294 | 21 | - | – | |
| Phobius | 295 | 606 | 312 | - | – | |
| Pfam | 423 | 512 | 90 | 1.5E-24 | ||
| CDD | 432 | 515 | 84 | 1.10348E-33 | – | |
| Gene3D | 432 | 606 | 175 | 9.4E-63 | ||
| ProSiteProfiles | 433 | 504 | 72 | 14.747 | ||
| SUPERFAMILY | 513 | 604 | 92 | 2.75E-23 | – | |
| Pfam | 519 | 603 | 85 | 3.0E-24 | ||
| CDD | 525 | 605 | 81 | 2.10932E-37 | – | |
| ProSiteProfiles | 526 | 597 | 72 | 17.251 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | L-threonine ammonia-lyase activity | Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Biological process | Isoleucine biosynthetic process | The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi1g1v0714200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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