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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0715700 |
| Transcript ID | LotjaGi1g1v0715700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|A0A0L9T3E9|A0A0L9T3E9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0715700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128395471..128397784) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACTATCTATACCCAGTGAAAGAAGAGTACTTGGAGTTTGAACCAACATCATCAGCATCTCACAGTCACAGTGGAGG TGATGATCAATCAATGGTGGTTGCTCCACGGCCAATGGAGGGGCTTCATGAGGTGGGGCCACCCCCATTTCTGACCAAGA CATTTGATGCAGTGGAGGACCCCACAACCAGCCATATAGTTTCATGGAGCAGGGGAGGTGCTAGTTTTGTGGTTTGGGAT CCACACACTTTCTCCAGGGAACTTCTTCCTAGATACTTCAAGCACAACAACTTCTCAAGCTTTGTCAGACAACTAAACAC TTATGTAAGTCAACTCTTGTGTGGTGTTTTGTGGTATTGTGGTGCATCAACCTTTTCAATTTCTATGTCATTCATGTTTT ACTTTTAAAAGACAAAATGTGAGCCAATTTGGAAACCAATCCCCTGTTTTCTGTGAATGAAAAATGAGTTTTTCTCTTTT TTTTAACTGCTTCCTTTTGTAAGGAAAAATATAGGGTATCTTTACATAAAATGGGGAAAAAAGAGGAATTGGTAGATAAG AGAGAAGTTAAAGACAGAGAGAGCTTGTATGATTTCTTTTTTGTAAGGGTTGGAAAGATTTTTTGGTGTTAAAATTAATT TTTGGGTATTTGTATATTTTTAATAATAGATTCTACTTTCAAATCAATTTTGGGATAAAATTACAATCCTAATTTATATG ATGAATATAATTAATAGTAAAATTTCATAATTGAATTTTATAGCATTATCTTATTTTATTTAAATATAAATCACTTTATT TTCAATTTGATGATAATCAATTCCACCTACATTAATTATATCCACTAATAATAAACAATTAATGTATTGCAACTTGCAAA GATGAACAGATTGTAATGACATGTAATTTGAATGTGATGTTGTTTTATATTTTCTTCACTCCCAAGTTCAATGGCCAGTT TTTTTTTCTATTTTTAACTTAAAATATATCCTGCGTTGTGCAATTTGAATATTTAAAGTCATCCCAACTTGTGGGTTCTG CTTCTGGATTTCTCCTACCTGCTCTTCCTGATGTAGAACATTCACTAGGTCTTCCAAATTGCATCATGCTTTGCGAATTT CTCCATTTCCTATTTATAATCAGAAATGGTACTTAGAAATCCAAACACTGACAAACTTCATTTTTTTCTCACACCAAATT ATCAATATTTTTTTTCTTATTCTATATTGAATGTTTGTAATTAGTATATATGCATATGTCTACCAAAAATATTCCACTTA TAATAGCTATCACTGTTGGTTTCCTATTCATTCCTGGTGTGTTTTTTTTATTTAAAAAAGTTATGTTCACACATTAGTTC CACTTCCACCAACATGAAACATAGATAACTGAATAATATGATAGGTGACGTGATATAAAATGGACTTTTCAAAAAAAAAA ATGGAGAGATGAAGAGAAATGAGTGAAAATGGTATGGAAAAAGTGTGAGAATATCAAAACTCTTTTTTTTTATATGTGGG ACTCCATTTTACAGGGCTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGGTTCTTCAGAGGGCACAGG CACCTGTTAGCAAACATAAGGAGAAGGAAGCACCCTTCTCAGCCAACACCTTCCCAACAACAAGCACCAGATCACTGTGT TGAAGCTGGTCGTTTCGGATTGGATGAAGAAATCGATCGTTTGAGGCGTGACAAGCAAGTTTTGATGATGGAGCTTGTGA AGCTCAGACACCAGCAACAGAACACAAGATCATACCTTCAAGAAATGGAGGAAAGGTTAAGAGGGACAGAAATTAAGCAG CAACAAATGATGGCTTTCTTAGCTAGAGCAATGCAAAATCCAGCTTTCATTCAGCAGCTACTCCAACAGAAGCAGAAGAG AAAGGAGCTTGAAGAGGCCATGACTAAGAAGAGGAGAAGGCCAATTGAGCATGGAACTTGTGCTAGTGGTGTTGGGGGAT CAAGAAGCAGTGTTAAAGTTGAAGTTCCAGCTTTTGGGGAATTTGGATTCGGTGTGTCAGAGCTGGAAGTGTTAGCCATG GAAATGCAAGGTTTTGGTAGAGGGAGGAGAGAACAAGAGGAAGAGCCTGAGGCACTAGAGCATCAAGAGAGAGCTGAGAG GTTGGATAAAGAACTTGATGAAGGGTTCTGGGAAGAACTTTTCAGTGAGAATTTTCATGGAGAATTAGACATTCCTACGT CTCAAGGGGAAGATGATGACGATGTCAATGTGTTGGTGAATCGCTTCGGTTACTTGGGTTCAAGTCCTAAATGA
CDS sequence (LotjaGi1g1v0715700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTATCTATACCCAGTGAAAGAAGAGTACTTGGAGTTTGAACCAACATCATCAGCATCTCACAGTCACAGTGGAGG TGATGATCAATCAATGGTGGTTGCTCCACGGCCAATGGAGGGGCTTCATGAGGTGGGGCCACCCCCATTTCTGACCAAGA CATTTGATGCAGTGGAGGACCCCACAACCAGCCATATAGTTTCATGGAGCAGGGGAGGTGCTAGTTTTGTGGTTTGGGAT CCACACACTTTCTCCAGGGAACTTCTTCCTAGATACTTCAAGCACAACAACTTCTCAAGCTTTGTCAGACAACTAAACAC TTATGGCTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGGTTCTTCAGAGGGCACAGGCACCTGTTAG CAAACATAAGGAGAAGGAAGCACCCTTCTCAGCCAACACCTTCCCAACAACAAGCACCAGATCACTGTGTTGAAGCTGGT CGTTTCGGATTGGATGAAGAAATCGATCGTTTGAGGCGTGACAAGCAAGTTTTGATGATGGAGCTTGTGAAGCTCAGACA CCAGCAACAGAACACAAGATCATACCTTCAAGAAATGGAGGAAAGGTTAAGAGGGACAGAAATTAAGCAGCAACAAATGA TGGCTTTCTTAGCTAGAGCAATGCAAAATCCAGCTTTCATTCAGCAGCTACTCCAACAGAAGCAGAAGAGAAAGGAGCTT GAAGAGGCCATGACTAAGAAGAGGAGAAGGCCAATTGAGCATGGAACTTGTGCTAGTGGTGTTGGGGGATCAAGAAGCAG TGTTAAAGTTGAAGTTCCAGCTTTTGGGGAATTTGGATTCGGTGTGTCAGAGCTGGAAGTGTTAGCCATGGAAATGCAAG GTTTTGGTAGAGGGAGGAGAGAACAAGAGGAAGAGCCTGAGGCACTAGAGCATCAAGAGAGAGCTGAGAGGTTGGATAAA GAACTTGATGAAGGGTTCTGGGAAGAACTTTTCAGTGAGAATTTTCATGGAGAATTAGACATTCCTACGTCTCAAGGGGA AGATGATGACGATGTCAATGTGTTGGTGAATCGCTTCGGTTACTTGGGTTCAAGTCCTAAATGA
Protein sequence (LotjaGi1g1v0715700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYLYPVKEEYLEFEPTSSASHSHSGGDDQSMVVAPRPMEGLHEVGPPPFLTKTFDAVEDPTTSHIVSWSRGGASFVVWD PHTFSRELLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFFRGHRHLLANIRRRKHPSQPTPSQQQAPDHCVEAG RFGLDEEIDRLRRDKQVLMMELVKLRHQQQNTRSYLQEMEERLRGTEIKQQQMMAFLARAMQNPAFIQQLLQQKQKRKEL EEAMTKKRRRPIEHGTCASGVGGSRSSVKVEVPAFGEFGFGVSELEVLAMEMQGFGRGRREQEEEPEALEHQERAERLDK ELDEGFWEELFSENFHGELDIPTSQGEDDDDVNVLVNRFGYLGSSPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 358 | 355 | 7.6E-157 | – | |
| PANTHER | 4 | 358 | 355 | 7.6E-157 | ||
| Gene3D | 43 | 140 | 98 | 3.2E-37 | ||
| SUPERFAMILY | 46 | 139 | 94 | 8.43E-35 | ||
| SMART | 46 | 139 | 94 | 5.3E-58 | ||
| PRINTS | 50 | 73 | 24 | 7.1E-19 | ||
| Pfam | 50 | 139 | 90 | 3.8E-29 | ||
| PRINTS | 88 | 100 | 13 | 7.1E-19 | ||
| ProSitePatterns | 89 | 113 | 25 | - | ||
| PRINTS | 101 | 113 | 13 | 7.1E-19 | ||
| Coils | 168 | 188 | 21 | - | – | |
| Coils | 230 | 250 | 21 | - | – | |
| MobiDBLite | 296 | 315 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0715700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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