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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0717000 |
| Transcript ID | LotjaGi1g1v0717000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat F-box protein; TAIR: AT3G63220.2 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30; TrEMBL-Plants: tr|A0A151RU54|A0A151RU54_CAJCA F-box/kelch-repeat protein SKIP30; Found in the gene: LotjaGi1g1v0717000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128528277..128532273) extracted from Lotus japonicus Gifu genome v1.2.
CTATATTGGGTTTACATATTTTCAAAATCTCTTGAAGGGAAGGGAAGAGGAAGTAACACTAACCCAAACCAAACCAACAA TATTCACATTCACATTTGCATTGTCCTTGTGTTGAAGGTTACATGGTCTTTCAATTCACCTTGCCGTTTCCTTTGCCTCT CTCTGCATCTCATCTCATCTCATCTCATCAATTCCTATTCATACCCGCTTCTCTCTCTCTTCCACAATCTTCGTTACCGA TTCCATTTCTTCTTCGCTACCAGGTAAACCCTTTTCTCCCTGCTATCTCAATCGTCGTCAGTGAGGGTTGTTGATGCTTA ATTTGCGCTAATTTTGGTCCTATTTGCAGTTTTTCGATTACCCATTTGCTTATTAATCTCGAATTTCAACTGGGTTTTGC TTTATCACTATTGTTTTTGTTTGTTATGCTCTCTCTATTTTGTTTGTAGTTTTGAAAAATGTTAGGGCTTGAATCCCAAT TTGAATTCTAAGAGCTGTGTCTTTGTATTGCTTGTGTGTGGATGATGAAAGTGGTTCATGAATCCAAGTTGTGTTGTTTT TTTCTTAATCTCTAAAATACCATTTGACCTTGTTCATTGCTTTATCCTTCATAGAATAGCACTGAGTTGCTCCATAGTGA AGATGTTTTCATGAAATTTCACTCAGAACTGGTGCTGTTCTTGGGTCAAAACTCAAAAGGAATTTTGACCCATTCACATT TGTTATACATTTTTCAAAATAGATAAAATTTAACAAAACAGAAGCCATTCATGACTAGTAGTGCAAATAATTTCATAAAG TTTCGTTCAGAACTCTTTCGAACCATCTTTGATTTCCAATTTTCCATTCACATTTTTCTCAACTTGTGTTCAAATGACGA TCATATTTGCTCTCTTTCTCTCTGTCCTACGATCTGTTCTGTTGGTGTGGTCGGGTTACATCTAGCTTCTTTACATATTT TGCTAGAATGAAATATATTTGTCCTTTTACGGATCAATATTCTTTTTACATTTGTTTTTGCTTGGTAAGCATCTACATCG CGAGGGTTGACTTGAGTCATTCATGGTTTTCTCAAATGCCCTTTTACAATTTATGTGAATTAGGTGTCTCTGACATTGGT ATTTTATTTCCTTATAACTTTTCCTATGCTTGTTATTGCTCTGTCATTGGAGTTGCACATTTAATTTTGGAAGTTGAATA TTAGAGTAACTTACTTTGACCCTTTAGTATGCAATTTGCTATATTTTAGAATCATGGATGATGGAACATTGGCTGTGAAA AGCTAAGGTTAATGCAGCTTTGAGAGGGTTTATGTTACTGTCAATAACAGGTCAGGCATGGGAATGCAACTGTTTTGTAG TATTACCATGCGGATATGTCACAGAAAACTCTCCACCAGGGAACCAAAAGATATGAGAAGTAAAAAATGTAGAACATAAA AAGGACAAGCCTGTTTTTGGGTATTACTTAGGCATTAGTTCCTGCTGATTAGTTAACCATTATAGCATCTATCGCTCCCT ACAGTTTCCCCACGCATATATTGAAATATGAAGTTAAAAGTAAAACTAGAGCATTAGGTGAGTAGAAGGGGATCAATATG AGATGATACTGGGTTGCACTCTTGTGCTCCGTCCTAATGAAGTATGAACCAGATTTTATCCTTCAATTGTCTAGATTTGG ACCTGTTAAACATTCTCGCTGGGATGGTTGATGTGTATGGTTGTTTGTTTAATTATTCAGTGGGAGAGAGGTTGAGAGAG ACATTATCTGTAAGTAATATGCAGTCTGAATTCTAGGATGTGATGGAGAAGGTAGATAAAATGCAAACTGATTATTGAAA CTTGAAGACTTTGAGAGAACATGCGACAATTGCTGGTGTAAGAGGGTGAAGATGTGTGATATATTAGAAGACTTTTTTGG CTTTATATTAAACAGTCAGCATGTCATTGGTTGACTCTCAGGAAAGAAACTATTATGTGCAAGTGTCTATGTGGTCAACA TGTCTCCTACCATTAGGTGGAGGGATGAACTACTGGTTTGGACTTTGGAATACTATGGGTCTGATGTGGCTATGTAAGAC TTATTAGTTACTGTGTACCAATCATAAATTATATTCAATTGCACTGCCTATCTGCCATTCTAATGACACCATGCCTTTCA AAATAATATTGCTTCTAATATATTCATTTGATTTTCTATAATATCACAATATCATTAAATATTGCTGGATAAATGTTGTG ATTGCAGGTACACCTCCCCTCACAGCTGGAAGCCAGTGGTGGAGACTCAGACAGATGAAATAGTGGTTGCAAATTTATAA TGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGTGTTCCGTTCTACCTCCACCCAAAG TTAGAACTTGTCTCTCGATCTTGGCAAGCTGCCATTCGTAGCCCTGAACTATTTAAAGCTCGGAAGGAGGTGGGCTCATC TGAGGAGCTGCTGTGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGATGTATGATCCTCTAAGAGATCTCTGGATTA CACTTCCTGTTCTTCCCTCAAAGATCAGACACCTTTCACACTTTGGTGCTGTTTCCACTGCTGGAAAGTTGTTTGTGATT GGTGGTGGAAGTGATGCTGTTGATCCTCGGACTGGTGACCAATATGGTTGTTTTGCAACCGATGAAGTATGGTCATATGA CCCTGTAGTCCGGCAGTGGTCCCTTCGGGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTCTTAATGGGA AAATTGTTGTGGCTGGGGGCTTCACTAGCTGTAGAAAATCAATATCTCAAGCAGAAATGTATGACCCTGAGAAGGATGTT TGGATCCCAATGCCTGATCTTCACCGCACTCATAACTCAGCCTGTTCAGGAGTAATGATTGGTGGAAAGGTGCATGTACT GCACAAGGATATGTCAACGGTTCAAGTTTTAGACAACGCAGGTGCAGGGTGGATCGTTGAGGATTGTGGGTGGTTCCAAA GTCCAATGGCGGTTGTCCAGGATGCACTTTATGTGATGAGCCATGGACTTATCCACAAGCAGGAGAAAGACGTGAGAAAG GTTGTAGGTTCAGCATCCGAGTTTCGTAGGAGAATTGGGTTTGGAATGATTGGCCTAGGTAATGAGTTATACGTGATTGG AGGCTTCATTGGCCCTGACAGATTGAACTGGGACCTTAAGCCATTATCCGATGTTGATGTTCTCACACTTGGGAATGAGA GACCAACTTGGCGCCAGGCAGCCCCAATGACACGGTGTCGCGGTACCATTTTTGGTTGTACACTGCTGAGAATTTAGACC ACCTCTCTCAATCTAGGCTCTCGTGTATTTTGTGCTCATAAGGGATTTGGATCCCTTCAACTAGACAAGGACATTTGTGT TTATTACATGCGGTGATGAGGTTAGTTTCTGTATCTGTTCTGGTTGAAGCAACACAGGCAAGGTCCACCAGAAAACAGGG ACAAATAGGTGCTACTCTACCTTGCATTCTATCACTTTAGCTGTTACCATTCTCTGTTCTTTTTCTCTTTTCTTTTCTGA AGGTAGCTGAGAGGGATTATGTTCCAAAACTTCATGATCTTGTAGTTTTGTTAATATGGAAATTAAATTAGCTATTAGAT GGGATTTACATTCTTTCATCTGCTAATTTATCTCTCTAATTAGTGATAGAAGGTTAGTATACTATTTAAGTTGTAAAACT TAGGGTTTGTACACCCTGCTTTTGTTATGCTTGTATTTCCCTTATAAATTCTCAAATGTTTTTGAGGTGAGAAAAGATCT TACAAGTTACAAGTATGCTGGCAAATTGAAAACGAAGTAGAGGTGAATTATGAAAGATGTTTAAAAGGAGATTTGATTGA ATTGATAAAATTTAGACACACCGAATTGGAATTTTCAATATTGAAAAAATCAGGTTAATTGGTTGAGTATTATTTTA
CDS sequence (LotjaGi1g1v0717000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGTGTTCCGTTCTACCTCCACCCAAA GTTAGAACTTGTCTCTCGATCTTGGCAAGCTGCCATTCGTAGCCCTGAACTATTTAAAGCTCGGAAGGAGGTGGGCTCAT CTGAGGAGCTGCTGTGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGATGTATGATCCTCTAAGAGATCTCTGGATT ACACTTCCTGTTCTTCCCTCAAAGATCAGACACCTTTCACACTTTGGTGCTGTTTCCACTGCTGGAAAGTTGTTTGTGAT TGGTGGTGGAAGTGATGCTGTTGATCCTCGGACTGGTGACCAATATGGTTGTTTTGCAACCGATGAAGTATGGTCATATG ACCCTGTAGTCCGGCAGTGGTCCCTTCGGGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTCTTAATGGG AAAATTGTTGTGGCTGGGGGCTTCACTAGCTGTAGAAAATCAATATCTCAAGCAGAAATGTATGACCCTGAGAAGGATGT TTGGATCCCAATGCCTGATCTTCACCGCACTCATAACTCAGCCTGTTCAGGAGTAATGATTGGTGGAAAGGTGCATGTAC TGCACAAGGATATGTCAACGGTTCAAGTTTTAGACAACGCAGGTGCAGGGTGGATCGTTGAGGATTGTGGGTGGTTCCAA AGTCCAATGGCGGTTGTCCAGGATGCACTTTATGTGATGAGCCATGGACTTATCCACAAGCAGGAGAAAGACGTGAGAAA GGTTGTAGGTTCAGCATCCGAGTTTCGTAGGAGAATTGGGTTTGGAATGATTGGCCTAGGTAATGAGTTATACGTGATTG GAGGCTTCATTGGCCCTGACAGATTGAACTGGGACCTTAAGCCATTATCCGATGTTGATGTTCTCACACTTGGGAATGAG AGACCAACTTGGCGCCAGGCAGCCCCAATGACACGGTGTCGCGGTACCATTTTTGGTTGTACACTGCTGAGAATTTAG
Protein sequence (LotjaGi1g1v0717000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGLIEGLPDAVAIRCLARVPFYLHPKLELVSRSWQAAIRSPELFKARKEVGSSEELLCVCAFDPENLWQMYDPLRDLWI TLPVLPSKIRHLSHFGAVSTAGKLFVIGGGSDAVDPRTGDQYGCFATDEVWSYDPVVRQWSLRASMLVPRSMFACCVLNG KIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVMIGGKVHVLHKDMSTVQVLDNAGAGWIVEDCGWFQ SPMAVVQDALYVMSHGLIHKQEKDVRKVVGSASEFRRRIGFGMIGLGNELYVIGGFIGPDRLNWDLKPLSDVDVLTLGNE RPTWRQAAPMTRCRGTIFGCTLLRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 345 | 345 | 5.7E-168 | – | |
| PANTHER | 1 | 345 | 345 | 5.7E-168 | – | |
| SMART | 8 | 48 | 41 | 0.0098 | ||
| Gene3D | 30 | 234 | 205 | 2.5E-36 | ||
| SUPERFAMILY | 61 | 334 | 274 | 2.62E-43 | ||
| Pfam | 92 | 146 | 55 | 3.9E-8 | ||
| SMART | 103 | 160 | 58 | 6.8E-4 | ||
| Pfam | 149 | 194 | 46 | 1.3E-12 | ||
| SMART | 161 | 208 | 48 | 1.4E-6 | ||
| Pfam | 277 | 330 | 54 | 8.7E-7 | ||
| SMART | 289 | 344 | 56 | 3.5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0717000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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