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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0719600 |
| Transcript ID | LotjaGi1g1v0719600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT2G41850.1 polygalacturonase ADPG2-like protein; Swiss-Prot: sp|P35336|PGLR_ACTDE Polygalacturonase; TrEMBL-Plants: tr|K7MYD0|K7MYD0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0719600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128988008..128991356) extracted from Lotus japonicus Gifu genome v1.2.
TACCAATCTACCTAGCTATAGCCGTTTTCATAAAAAAATATTCCTCACCTTTCAAAGAACATCTATTTGCTCTGATAATA TACAATGGGAGAAGCTATAATGGCCCCCTTTAAACATCATCTTCTTTCATTCACAATTATCATCATTTCATTTGTTGCTT GTTATAGCACCTTGCAAGATCAGGACCCACTGATCAGTAGTATATATGTTGATGATTCACCTAATTACATTGATGATGGT GGGAGTGGGACATTCAAGAACCTGATCAAGCAAAGCACAAATGTTCTGAGCTTAAACAGGTTTGAAGAGTTGGGTGGCAT TTCAAGTTCGCTTGAAATTGTTAATGTCAATGATTATGGAGCTAAAGGGAATGGTCTAACTGATGACACAGAGGTACATA CTCAACAAGTCCAAGATATAATTTTTTTTATATATTTTTGACTGAATAGTCACTCCCTGAAAATTTTAAGGTAGGTTGGT TTAGTCCCCAACTTTAAGAAAGTGAAAATAGTTCTGAAAGATGAAAAAAATATTCAATTGAGTTTTTTAGGGACTAAATA ATGAATCACATTTTTCATATTTCAAGAGGTAAATTTATCATTTTTCATCTTTTGGAGATCAATTTGCTAATTCAATTTTT TATGAACCAAATTGACCGACCCTATATCTTTTAAAGACCAAAGTGAACTATTCAGCCTGCTTTCTATGTTCTTTTCTTAT CAATTTATCAATATCAACATGCATGTGTGAGTTTGGTTTCTTCGTAATTGGAAATAAAAATATTTTATAGACACCCAGTT GGATGAAGTCTATATGTAAATTATTTGAAATAGAAAGAAGAAAAGAGAAGTGATAAATGTGATGTGATACAAAATTTGGG ATAGAGAGAAATGGCATTACTTATTATTGGTGTGTTTATAAATTGAATTGGAAAAATAGCATTACTTCTCTTACTATTGG CTTTGGGGGCTATTTCAGGCATTCAATAAGGCTTGGCAAGTAGCATGTTCTTCTGAGGAAGCAGTTCTTGTGGTGCCTCA GAAGAATTATCTACTCAAACCAATAAGATTCTCTGGTCCTTGCAAATCTAACACCATAGTTCAGGTTAGTTGCATGTCCT TCACAATTTTTTAACCTTCAATATTTTAGCAAAGTATAATTAATTAACATATCAAACAGTAACTTTCATGATAAACATGT GCAATTTGTGATAACAATTTGCCAGATTTCTGGAACTCTTGAAGCGTCAGATGATCCCTCAGATTACAGTGAAGATAAAA AACATTGGCTTGTATTTGACAGTGTTCAGAAATTATTAGTTAATGGTGGTGGAACTATCAATGGAAAGGGCAACATATGG TGGCAAAATTCATGCAAAAGAAACAAAAAGAAAGTAAGATATCATAATCACAATTCTTAAATCAATTAAGCACCACATAG ATATAAATAAATCATGTTCAAATGATGACCAATCTTTTTTATGTTTTTCTCTCTCTCTTTTGCAGCCTTGCAAGGATGCC CCAACTGTATGTATAATTATTAATTAGTTACCTCTGACTAATATGATTACATTCAAATATTTGTTAATTAACCATGGTTT GTAATTTATGTTTGTAGGCTCTAACTTTTTATAATTGCAAGGACTTAATAGTTGAGAATATGACCATAGAAAATGCCCAA CAAATCCATGTCTCATTCCAGGACTCCATGAATGTTAAAGTTTCTGGTCTCCTTGTGACAGCACCAGGGGATAGCCCTAA TACTGATGGGATTCATGTCACAAATACCCAAAACATCAAAATCTCAAGCTCTGTTATAGGAACTGGTATTCACAAATCAC AAGTTAAATATGTATCCATTTAGTGTATGTTTGAAATTTTTTTACAATTGAATGAATTGATTCTAAAGTCAAAAACTCAA AATCAATTATGGATGGGTTGGAGTTTCTGTGAGTAGCTTATGAGTTACAAATTGATTCTGAGGAAAAATACATTGATCAT ACTTTCAAAACAAAGAATCAATTAAAACCTCATACATGTTCTGTATCTCGGTAACCACCTTTAATTTGATTTCAATTTGT TTCAGGTGATGATTGTATATCAATAGTACATGGATCCAAGAATGTAGAAGCCACAGACATAACTTGTGGACCTGGCCATG GTATCAGGTGATTAACTTCAGCAAACATGTATCTTTTGCTTTTGTTATTTTGAATTGTTTGTATATGAATTCATTTACAA TTGTTTATTTCAGTATTGGAAGCTTAGGGGCTGGAAAATCAAAGGAATTTGTTTCAGGAGTCATAGTAGATGGAGCTAAG CTTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGTAGTTTGAATTTTGAACTTTAATTTGTTGTACCTATA TATATCATGAACCAACAATTAATCCTAAAATATTAAGTTAGTGCGTGAAAGCACATGATTTTTATATCTAACACTGCAGA TTCTATTGAATTTGGATTCACTGTCGCCAGTAAATTCATAAATTCACACAGTTAAGGAATATGCATGAGCCATTCAACAG CTGAAATTTTAAACTTATCTCTGCGGTTCGATTTGATAAATATATCAGTTAATCATCTTATTTATATGGTTCAAATTTCT ACACTCTGAATGTAGAATTGCCCTGAGGGCTGCAGGGAACCCAAACCCGATTCTATATCTCATGTAAAAATTTAGTATGC TAATGTGGATTTACAGAGTCCTAAATGGTTTGCCGAATATGTAGGGAGGTTCAGGAATGGCTAGCAACATCCAATTTAAG AACATTCAAATGGATAATGTGACCAACCCCATAATAATTGACCAGAATTACTGTGACAAAAAGAAGAAGCCATGCAAGAA ACAGGTAAATAATGTAAACAACTCTTCCTATTACTAGTCAATATATTTTTTTATCTTACACAGCTATCATCGACAAGAGG CAATCCTATTACTGAGCAATTGGCCTTGTAGTTGCAGAAATCGGCTATCCAGATTAGGAATGTATTGTATCAGAACATAG TAGGCACAAGTGCTTCGGATTTAGCTGTGAAGTTTGATTGCAGCGAGGAGTTTCCATGTCAGGAGATAGTAATGCAGAAC ATAGACCTGAAAGGTGAAGGAGGAGAAACCTCTGAGGCTTTATGCAACAATGTTAAATTGTCTTACTTAGGACACGTTAA CCCTCGCTGTAACTCTAATTAGAACCATACAATTAATACATCATTCATTGATCAATGTGTATTATTAATTACCAATAGGA CATTGACTGGTTGTGAATTAATAATGTGATTCTTTAAACAATGATTAATGTGATAAACGAAGATTGCAA
CDS sequence (LotjaGi1g1v0719600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAGCTATAATGGCCCCCTTTAAACATCATCTTCTTTCATTCACAATTATCATCATTTCATTTGTTGCTTGTTA TAGCACCTTGCAAGATCAGGACCCACTGATCAGTAGTATATATGTTGATGATTCACCTAATTACATTGATGATGGTGGGA GTGGGACATTCAAGAACCTGATCAAGCAAAGCACAAATGTTCTGAGCTTAAACAGGTTTGAAGAGTTGGGTGGCATTTCA AGTTCGCTTGAAATTGTTAATGTCAATGATTATGGAGCTAAAGGGAATGGTCTAACTGATGACACAGAGGCATTCAATAA GGCTTGGCAAGTAGCATGTTCTTCTGAGGAAGCAGTTCTTGTGGTGCCTCAGAAGAATTATCTACTCAAACCAATAAGAT TCTCTGGTCCTTGCAAATCTAACACCATAGTTCAGATTTCTGGAACTCTTGAAGCGTCAGATGATCCCTCAGATTACAGT GAAGATAAAAAACATTGGCTTGTATTTGACAGTGTTCAGAAATTATTAGTTAATGGTGGTGGAACTATCAATGGAAAGGG CAACATATGGTGGCAAAATTCATGCAAAAGAAACAAAAAGAAACCTTGCAAGGATGCCCCAACTGCTCTAACTTTTTATA ATTGCAAGGACTTAATAGTTGAGAATATGACCATAGAAAATGCCCAACAAATCCATGTCTCATTCCAGGACTCCATGAAT GTTAAAGTTTCTGGTCTCCTTGTGACAGCACCAGGGGATAGCCCTAATACTGATGGGATTCATGTCACAAATACCCAAAA CATCAAAATCTCAAGCTCTGTTATAGGAACTGGTGATGATTGTATATCAATAGTACATGGATCCAAGAATGTAGAAGCCA CAGACATAACTTGTGGACCTGGCCATGGTATCAGTATTGGAAGCTTAGGGGCTGGAAAATCAAAGGAATTTGTTTCAGGA GTCATAGTAGATGGAGCTAAGCTTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGTTCAGGAATGGC TAGCAACATCCAATTTAAGAACATTCAAATGGATAATGTGACCAACCCCATAATAATTGACCAGAATTACTGTGACAAAA AGAAGAAGCCATGCAAGAAACAGTTGCAGAAATCGGCTATCCAGATTAGGAATGTATTGTATCAGAACATAGTAGGCACA AGTGCTTCGGATTTAGCTGTGAAGTTTGATTGCAGCGAGGAGTTTCCATGTCAGGAGATAGTAATGCAGAACATAGACCT GAAAGGTGAAGGAGGAGAAACCTCTGAGGCTTTATGCAACAATGTTAAATTGTCTTACTTAGGACACGTTAACCCTCGCT GTAACTCTAATTAG
Protein sequence (LotjaGi1g1v0719600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEAIMAPFKHHLLSFTIIIISFVACYSTLQDQDPLISSIYVDDSPNYIDDGGSGTFKNLIKQSTNVLSLNRFEELGGIS SSLEIVNVNDYGAKGNGLTDDTEAFNKAWQVACSSEEAVLVVPQKNYLLKPIRFSGPCKSNTIVQISGTLEASDDPSDYS EDKKHWLVFDSVQKLLVNGGGTINGKGNIWWQNSCKRNKKKPCKDAPTALTFYNCKDLIVENMTIENAQQIHVSFQDSMN VKVSGLLVTAPGDSPNTDGIHVTNTQNIKISSSVIGTGDDCISIVHGSKNVEATDITCGPGHGISIGSLGAGKSKEFVSG VIVDGAKLSGTTNGVRIKTWQGGSGMASNIQFKNIQMDNVTNPIIIDQNYCDKKKKPCKKQLQKSAIQIRNVLYQNIVGT SASDLAVKFDCSEEFPCQEIVMQNIDLKGEGGETSEALCNNVKLSYLGHVNPRCNSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 10 | 454 | 445 | 1.7E-217 | – | |
| PANTHER | 10 | 454 | 445 | 1.7E-217 | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 31 | 457 | 427 | - | – | |
| Gene3D | 79 | 453 | 375 | 2.3E-122 | ||
| SUPERFAMILY | 84 | 455 | 372 | 9.71E-123 | ||
| Pfam | 118 | 443 | 326 | 5.5E-103 | ||
| SMART | 215 | 235 | 21 | 4300.0 | ||
| SMART | 238 | 264 | 27 | 41.0 | ||
| SMART | 265 | 286 | 22 | 1500.0 | ||
| ProSitePatterns | 295 | 308 | 14 | - | ||
| SMART | 318 | 339 | 22 | 560.0 | ||
| SMART | 347 | 368 | 22 | 1800.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0719600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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