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LotjaGi1g1v0721300.1

Overview

Field Value
Gene ID LotjaGi1g1v0721300
Transcript ID LotjaGi1g1v0721300.1
Lotus japonicus genome version Gifu v1.2
Description Pectinesterase; TAIR: AT3G05610.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21; TrEMBL-Plants: tr|I1KGU9|I1KGU9_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0721300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:129225232..129233088) extracted from Lotus japonicus Gifu genome v1.2.

GTTAGAAATTGTGGTTCTAAATTCTCCCACTCTCTAAGCATGTTACACCTCATGCTTCTTGATCCACCTCCAGCTTGTGA TACATCATGAATTTAGGTGACTAAGCAATTGCTAAATTGCTTCATATCATGCCACATCCAAATCTGCATGACTCACCTTT AATTCAGCAAGCATGACAAAGACAATTTTTGTTCTAAACATTACACCTCCTCCTTGCTATATTTCTACGTGGCAATTGTT GCCTCCTTTGCTTCACCCTTAAGGATTGGTTATATGCCTATATATATTGCTGCAAAGACAAGGCTTCAGAAGCATCACAC ATAGAGTGCATATACACGAGAGAGGATTCAAAGAAACATTGGCACACTTGTTTCGTGTCATTTGGTTTTTGGTGAGAATT CTAGTTTCATTTGAGAGAGTTATTTTGTGAGAAAAATATTTCTCTTTGTCCTCATTTCTATAAGAGGATTTGTTGTACTC TCCCTTTTACATAGTGGAACTTTGCTCGTGATCGCCCGTGGTTTTTTACCTCTCACATTGGGAGGGTTTTTCCACGTAAA TCTTGTGTGTTCTTTTTCTTGCCACTGTACTTTTACTTCTCTTTAATTCTCAATTATCTCGATCCTGTGCTTCCGCATTG CACTGATACCCTAACAAGTGGTATCAGAGCTCTTATTGAGAATTTCAAAATGTCTCCTAAATTTGACATCGAGAAGTTTG ATGGCAAGATTAGCTTTTCTATTTGGCGAGTCCAAATGAAAGCCGTTCTTCCTCAGGACGGATTAAAGAAAACCTTAGAT GGAAAGGCGAAGAAGCCAGCTTCCATGACTGACGATCAATGGGACGAGTTGGATGACAAGGCGCTTTCAACAATCCAACT TTGCTTATCAAAAGAGGTTCTCCGCGAGGTGGCCAGTGAAGCGACCGCCGCCGCATTATGGCTGAAGTTAGAAGCCTTAT ATATGACGAAGAGCCTCGCAAACAAGCTTCGTCTCAAAGAACGCTTATACACCATCCGTATGGTTGAAGGTACTCCTATT CAATCTCATCTTGATGAGTTTAACTCTATAATTTTGGATCTGGAAAACATTGATATTAAAATTGATGATGAAGATAAATC TGTTTTGTTGGTTGTCTCTTTACCTTCTACCTACAAACACTTCAAGGAAATCATGTTGTATGGAAACAATGATACCTTAT CCTTTGAGGATGTTAAATCTAATTTGTTGTCCAAAGAAAAGTTTGATCTTGAAGTTCATTCTGTGGACAAGGGTGAGGGC TTAAGTGTTCGAGGTAGAATTCAAGAAAAAGGGAGTACCAGTTACAAAAAGTCCAGATCCAAATCAAGGGGACGCAAATC CAACAAACTCTGTCGCTATTGCAAGAAACCTGGGCACGAGATTTCTGATTGCTTTATCTTGAAGAAAAAGCAAGAAAAGG GGAAAACTCCACAATCTCCTGAAGCTGCCAATATTGAAGCTGATTCTGACGGTGACATTACTTTATGTGTTGTCTCTTCT AATAAGAGGAGTAAAACAGAATGGGTTCTTGACTCCGGATGTTCTTTTCATATGTGCCCTTATAAGGACTTATTTACCAC TTTTGAATCTCTTGATGGTGGTTTTGTCTTAATGGGTGATGACACCCAATTAAAGGTTGCAGGAATAGGAACTATTCGGA TCAAGACCCATGTTGGTGTTGTCAGAACCTTTGCTAATGTCCGCTATGTTCCTGATCTGAGGCGGAACTTAATTTCTCTT GGCACTCTTGAGTCTCTCGGGTGCAAGTTTTCATCTGAAGGTGGGAGTCCTTGAAGTATATAAAGGTTCTCTTCCTTTAT TGAAAGGTAACCGCGTAGGTTGCTTATATATCTTGCAAGGATCTACTGTGACAGGTTCAGCAGCTGTATCATCATCCATG CCTGATAATGATGTCACCAAATTATGGCACATGCGCCTGGGCCATATGAGTGAAAAAGGCATGCATCTTCTGAGCAAACA AGGTCATCTTGGTAAACATGGCATCGGTAAGTTGGAGTTTTGTAAACATTGTGTTTTTGGGAAACAGAAAAAGGTTAGTT TCTCCACTGCAACTCACCGTACCAAAGGTATTCTTGATTATATTCATTCTGACCTTTGGGGGCCTTCTAAATCTCCTTCC TATGGAGGACGCCGCTATATGATGACTATTATTGATGATTTTTCCCGTAAAGTTTGGGTTTATTTTCTGCGGCATAAAAA TGAGACTTTTCCTACTTTCAAGAAGTGGAAAACTCTTGTTGAAACTCAGACAGGGAAGAAAGTGAAGAAGCTCAGAACAG ATAATGGATTAGAGTTCTGTAGTGGTGACTTTAATGAGTTCTGCGCAAATCATGGTATTGCTAGACACAAAACCATTCCA AGGAATCCCCAGCAAAATGGTGTTGCAGAACGGATGAACAGGACTCTACTTGAGAGAGCTCGTTGCATGCTCTCAAATGC TGGGTTATGACATCGACGTGATTTTTGGACCGAGGCAGCATCTACGGCATGTTACTTGGTCAACCGCTCTCCACATTCGG CGCTTGACTTCAAAATTCCAGAAGAAATTTGGTCAGGTAATCCTGTTGATTATTCTAAATTAAGAATTTTCGGATGTCCT GCATATGCACATGCCAATGATGGTAAATTAGCTCCAAGAGCTGTTGAGTGCATATTTCTTGGTTACACATCTGAATCTAA GGGGTATCGTTTATGGTGCTCTAATTCAAAGTCACAAAAGTTAATTCTTAGCAGAGATGTGACTTTTAATGAGGATGCAT TATTATCTTATGGAAAACAGTCTTCTGTGTCTTCTTCTACTAGTACAGATAAACTGCAGGGTACTAGCGAGAAGGTGGAG TTTGTATTAAAGCCTGCAACTCCTGATGTCGATGTTCCATCTTCCTCTACAAATGAATCAAGCATCGATGATCACCATGC TGATGATGATCGTGATGATAGTACCACTTCTCCTATTCAACAACAAGGAGATGATTATTCTATTGCTCGAGACAGAACTA GAAGACAAATCAGAAAGCCAGCTAGATACATTAATGATGACAATTTAGTTGCTTATGCATTGTCTATTGCACAAGAGGTA AATGATGGCGTTGAGCCTGCCAGCTACACTGAAGCTGTTTCTTGTGTTGAGTCTTCTCAGTGGCTAGTGGCTATGAATGA AGAAGTTGAGAGTCTTCATAAAAATAGTACTTGGGCTTTGACAGAGCTTCCTAAAGGCAAGCGACCCTTAAGGTGTAAAT GGGTCTATAAGAAGAAAGACGGCATTCCCGGGGTTGAAGATCCAAGATGCAAAGCACGACTAGTCGTTAAAGGCTTTAAT CAAAAGGAAGGTATTGACTTTAATGAGATATTCTCACCTGTTGTTCGTCACACTTCCATTCGTGTTTTGCTTGCTTTTGT TGCTTTGTTTGATTTGGAATTGGAGCAACTTGATGTAAAGACAGCTTTTCTACATGGAGAGTTGGAAGAAGAAATCTACA TGGAGCAACTCGAGGGATTTATTGTTCCTGGTAAGGAGCATCTTGTCTGTCGATTGAAGAAATCCTTATATGGCCTTAAG CAAGCTCCCAGACAGTGGTACAAGAGGTTTGATTCTTTCATGATTGGGCAAAATTATTGCAGGAGTCAATTTGATGACTG TATTTACTTTCAAAATTTTCAAGATGGATCCTTCATATACTTGTTACTTTATGTTGATGATATGTTAATTGCATCACGTG ACAAGTCTTTGATCCGGAAATTGAAAACTCAACTCAGTAATGAGTTTGAGATGAAAGAATTAGGTGCAGCAAAGAAAATT CTTGGTATGGAGATTCGCAGGGACCGTCAAGCTGGTAAACTGTTCTTATCTCAACAGAAATATATTGAGAGAGTGCTTGA TAGGTTTAATATGAATGATTGCAATCCTGTTTCTACTCCACTTGCTGCACATTTCAAGTTATCTTCAGAATTTTGCCCAG ACACAGAGGAAGAAATGAAGCGTATATCGCTTGTTCCTTATGCTAGTGCAGTTGGCAGTCTTATGTATGCCATGGTATGC ACTAGGCCAGATTTAGCATATGCTGTTAGCATGGTAAGTCGGTATATGCACAATCCTGGCAAGAATCACTGGAGTGCTGT AAAATGGATTTTTCGGTATCTAAAAGGTACTTTTCATATTGGCTTGGTATTTGACAGAAGCATGGCTACAACCGATGATG TTGTAGGTTATGTTGACTCAGATTATGGTGGTGATCTTGATCGAAGGAGATCTCTTTCAGGTTACATCTTTACTCTCTGT AATGGTGCTATCAGCTGGAAAGCTACACTTCAATCTATTGTTGCATTGTCTACGACTGAAGCGGAGTATATTTCAGCAAC AGAGGGTGTCAAGGAGGCTATTTGGCTTCGAGGTTTGGTCAATGAACTTGGTCTTACACAGGGTGTTCTTACTGTGTTTT GCGATAGCCAGAGTGCTATTCACTTGACCAAGAATAATCGTTATCACGACAGGACCAAACACATTGATGTAAAGCGCCAC TTTATCCGAGATATTGTTGTTGCCGGTGAAATCTTAGTTGAAAAGATTCACACGTATGAGAATCCAGCAGATATGCTTAC CAAGCCACTTCCATATTCCAAGTTCCAGCATTGCCTGGACTTGGTTGGTCTCTTCAGTACTTGAGCGCCCTTCGGGGCTT TATTTGGCGACGAGCACTTGTCGAATTCGAACCAAGGTGGAGATTGTTAGAAATTGTGGTTCTAAATTCTCCCACTCTCT AAGCATGTTACACCTCATGCTTCTTGATCCACCTCCAGCTTGTGATACATCATGAATTTAGGTGACTAAGCAATTGCTAA ATTGCTTCATATCATGCCACATCCAAATCTGCATGACTCACCTTTAATTCAGCAAGCATGACAAAGACAATTTTTGTTCT AAACATTACACCTCCTCCTTGCTATATTTCTACGTGGCAATTGCTGCCTCCTTTGCTTCACCCTTAAGGATTGGTTATAT GCCTATATATATTGCTGCAAAGACAAGGCTTCAGAAGCATCACACATAGAGTGCATATACACGAGAGAGGATTCAAAGAA ACATTGGCACACTTGTTTTGTGTCATTTGGTTTTTGGTGAGAATTCTAGTTTCATTTGAGAGAGTTATTTTGTGAGAAAA ATATTTCTCTTTGTCCTCATTTCTATAAGAGGATTTGTTGTACTCTCCCTTTTACATAGTGGAACTTTGCTCGTGATCGC CCGTGGTTTTTTACCTCTCACATTGGGAGGGTTTTTCCACGTAAATCTTGTGTGTTCTTTTTCTTGCCACTGTACTTTTA CTTCTCTTTAATTCTCAATTATCTCGATTCTGTGCTTCCGCATTGCGCTGATACCCTAACATTACTAAATATAACATTGT AAAGTTACATATGAAAATGATGAATTAGAACAAAATTCTTTAGAAACAAAACAGAGAGGCTTGCCATATATGCAGTGTGC CTTCCGTGTTTCATCTATTTTAGAAAAATAGCTATCTGCCCTCATGGCTAAACAACATCACATTCATGGAATCTACTTTT GACCAGTGTAAAATAGCATGGTTCTTTGTATATAAATAATCAATCCACATAGATGCATTCTCCAAAGGACTTTCATTGTT TCCTCAGTGGGTTCATTTCCCTTCTCTTCTCTCTGTGTGCCTCCTAAATTTGCAGGAACCAATATACAAGTAAGAACAAA CAAAAGTTACATATGGTTGTTAACTTGTTATTGTTCATTCAATTTTGTTTTTTGTTTACTAAAGTTAACTTGTTATTTAT TAGTTTAATTTACACAGGAGCTATTAAACTCAATTGTCAAAATGTCTGGGGGAGATGCAAAGAAGGGAAGGAGAGTCATC ATCATTGGTGTGTCAACCTTGCTATTGGTGGCTATGGTTGTGGCCGTCACGGTTGGCGTGAACCTCAATCACAATAAGAG TGAAGAGAACAACATGAAAAACTACAACCAGGTTTCTACCACGGTTAGAGCAGTCCAAACTCTTTGCCATCCCACTGATT ACAAGAAGGAATGTGAGGAAACTCTTATAGCAGAAGCTGGAAACACCACAGACCCAAAAGAACTTATCAAAATTGCCTTC AACATTACAATCCAGAAAATTGGTGACAAACTCAAGGAAACTACTTTGTTGCATGAGATTGAAAAGGAGCCTAGAGCAAA GATGGCACTTGAGACATGCAAGCAACTTATGGATCTTTCAATTGAAGAGTTGACAAGGTCATTTGATGATATAGGCAAGT TTCAACTCCAGAATCTGGACAAAATCCTCATGAATGTAAAGGTTTGGCTTAGCGGTGCAGTCACATACCAAGATACATGT TTGGATGGATTTGAGAACACCACTAGCGAAGCTGGAATGAAGATGAAAGAGCTATTAACAACAAGCATGCACATGAGCAG CAATGCCCTTGCTATTGTCTCTCAACTTGCTGACGCAATATCAGATTTCAATGTCACAAAGTTAACTGGGCGTCGCCTCC TTCTTCAGAATTTTGAGACTCCATCATGGGTTGATCTTGATCATCGTAGACTCCTTGATGCAAAGAAAAACACACTCAAA CACAAGCCTAATGTGACTGTAGCCATAGATGGGAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGAAGGTTCCTCA TCATAATAAAAAGCCATTTGTGATTTACATCAAGAAGGGCATTTACCAAGAGTATGTTGAAGTTAACAAGCATATGACTC ATGTTGTCTTTGTTGGTGATGGTGGCAAAAAGACAAGAATCACAGGCAACAAAAACTTCATAGATGGAATTAACACCTAC AGAACTGCAACTGTTGGTATGCCCTCTTCTAATTGAATAACTATCATACTTATAGCTTGTCAACATTAATATATGCATCT CTTAAATTAAAGATACATTTTAAAAAAATTTAAATCAATGAATTGTAAATTAATGTACAAATACATGCAGCTATCCAAGG AGATCATTTTGCTGCCATCAATATGGGTTTTGAGAACTCTGCTGGCCCTCACAAGCATCAAGCAGTGGCATTAAGGGTTC AAGCTGACAAGTCCATCTTCTACAATTGCTCAATGGATGGGTACCAAGATACACTCTATGCACACACCATGCGCCAATTC TACCGGGATTGCACCATTTCGGGTACCATTGACTTTGTCTTTGGTAATGGGCTAGTAGTTTTTCAGAACTGCACTTTTGT GGTCAGAAAGCCATTGGAAAACCAACAATGCATTGTAACAGCACAAGGCAGGAAAGAAAGACAGCAACCATCAGGAATAG TAATCCAAGGTGGTTCCATTGTGTCTGACCCTGAGTTCTTCCCAGTGAGGTTTGACAATAAGGCATATCTTGCTCGTCCA TGGAAGAATTACTCTAGAACTATCATCATGGACACCTACATTGATGATTTGATTCATCATGATGGCTACTTGCCATGGCA AGGATTAGAAGGATCATCTGGCATGGACACTTGCTTCTATGCTGAGTACCACAACATAGGACCAGGTTCAGATAAATCAA AACGTGTACATTGGGCTGGAATCTGGAACCTCAATTCAAAAGCTGCACATTTGTTCTCCCCATCCAAGTTCTTCCACGGA GATGATTGGATTGAGGTTACTGGAATTCCCTATTTTACTGGCATTCCAGACCACCATAGGCACAAGAAAACATTACTTAA TTGGTGATGGTGCTAGCAGAGACTAATAATTGTTTTCCATTTTGGTGATTTTTTGTGTAGTGGCTAGTCAATGGCCCTTT ATGCATGTATCATTACA 

CDS sequence (LotjaGi1g1v0721300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGGGGGAGATGCAAAGAAGGGAAGGAGAGTCATCATCATTGGTGTGTCAACCTTGCTATTGGTGGCTATGGTTGT GGCCGTCACGGTTGGCGTGAACCTCAATCACAATAAGAGTGAAGAGAACAACATGAAAAACTACAACCAGGTTTCTACCA CGGTTAGAGCAGTCCAAACTCTTTGCCATCCCACTGATTACAAGAAGGAATGTGAGGAAACTCTTATAGCAGAAGCTGGA AACACCACAGACCCAAAAGAACTTATCAAAATTGCCTTCAACATTACAATCCAGAAAATTGGTGACAAACTCAAGGAAAC TACTTTGTTGCATGAGATTGAAAAGGAGCCTAGAGCAAAGATGGCACTTGAGACATGCAAGCAACTTATGGATCTTTCAA TTGAAGAGTTGACAAGGTCATTTGATGATATAGGCAAGTTTCAACTCCAGAATCTGGACAAAATCCTCATGAATGTAAAG GTTTGGCTTAGCGGTGCAGTCACATACCAAGATACATGTTTGGATGGATTTGAGAACACCACTAGCGAAGCTGGAATGAA GATGAAAGAGCTATTAACAACAAGCATGCACATGAGCAGCAATGCCCTTGCTATTGTCTCTCAACTTGCTGACGCAATAT CAGATTTCAATGTCACAAAGTTAACTGGGCGTCGCCTCCTTCTTCAGAATTTTGAGACTCCATCATGGGTTGATCTTGAT CATCGTAGACTCCTTGATGCAAAGAAAAACACACTCAAACACAAGCCTAATGTGACTGTAGCCATAGATGGGAGTGGAGA TTTCAAGAGCATCAATGAGGCATTGAAGAAGGTTCCTCATCATAATAAAAAGCCATTTGTGATTTACATCAAGAAGGGCA TTTACCAAGAGTATGTTGAAGTTAACAAGCATATGACTCATGTTGTCTTTGTTGGTGATGGTGGCAAAAAGACAAGAATC ACAGGCAACAAAAACTTCATAGATGGAATTAACACCTACAGAACTGCAACTGTTGCTATCCAAGGAGATCATTTTGCTGC CATCAATATGGGTTTTGAGAACTCTGCTGGCCCTCACAAGCATCAAGCAGTGGCATTAAGGGTTCAAGCTGACAAGTCCA TCTTCTACAATTGCTCAATGGATGGGTACCAAGATACACTCTATGCACACACCATGCGCCAATTCTACCGGGATTGCACC ATTTCGGGTACCATTGACTTTGTCTTTGGTAATGGGCTAGTAGTTTTTCAGAACTGCACTTTTGTGGTCAGAAAGCCATT GGAAAACCAACAATGCATTGTAACAGCACAAGGCAGGAAAGAAAGACAGCAACCATCAGGAATAGTAATCCAAGGTGGTT CCATTGTGTCTGACCCTGAGTTCTTCCCAGTGAGGTTTGACAATAAGGCATATCTTGCTCGTCCATGGAAGAATTACTCT AGAACTATCATCATGGACACCTACATTGATGATTTGATTCATCATGATGGCTACTTGCCATGGCAAGGATTAGAAGGATC ATCTGGCATGGACACTTGCTTCTATGCTGAGTACCACAACATAGGACCAGGTTCAGATAAATCAAAACGTGTACATTGGG CTGGAATCTGGAACCTCAATTCAAAAGCTGCACATTTGTTCTCCCCATCCAAGTTCTTCCACGGAGATGATTGGATTGAG GTTACTGGAATTCCCTATTTTACTGGCATTCCAGACCACCATAGGCACAAGAAAACATTACTTAATTGGTGA 

Protein sequence (LotjaGi1g1v0721300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGGDAKKGRRVIIIGVSTLLLVAMVVAVTVGVNLNHNKSEENNMKNYNQVSTTVRAVQTLCHPTDYKKECEETLIAEAG NTTDPKELIKIAFNITIQKIGDKLKETTLLHEIEKEPRAKMALETCKQLMDLSIEELTRSFDDIGKFQLQNLDKILMNVK VWLSGAVTYQDTCLDGFENTTSEAGMKMKELLTTSMHMSSNALAIVSQLADAISDFNVTKLTGRRLLLQNFETPSWVDLD HRRLLDAKKNTLKHKPNVTVAIDGSGDFKSINEALKKVPHHNKKPFVIYIKKGIYQEYVEVNKHMTHVVFVGDGGKKTRI TGNKNFIDGINTYRTATVAIQGDHFAAINMGFENSAGPHKHQAVALRVQADKSIFYNCSMDGYQDTLYAHTMRQFYRDCT ISGTIDFVFGNGLVVFQNCTFVVRKPLENQQCIVTAQGRKERQQPSGIVIQGGSIVSDPEFFPVRFDNKAYLARPWKNYS RTIIMDTYIDDLIHHDGYLPWQGLEGSSGMDTCFYAEYHNIGPGSDKSKRVHWAGIWNLNSKAAHLFSPSKFFHGDDWIE VTGIPYFTGIPDHHRHKKTLLNW 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 575 575 0.0
SignalP_GRAM_POSITIVE 1 40 40 -
PANTHER 1 575 575 0.0
Phobius 1 11 11 -
Phobius 12 35 24 -
TMHMM 13 35 23 -
Phobius 36 583 548 -
TIGRFAM 51 209 159 1.0E-24
SMART 53 205 153 9.5E-35
Gene3D 55 211 157 3.9E-18
SUPERFAMILY 57 209 153 1.28E-30
Pfam 57 205 149 6.6E-26
CDD 60 210 151 2.56194E-43
Gene3D 251 570 320 1.0E-118
SUPERFAMILY 255 569 315 1.61E-103
Pfam 257 556 300 2.0E-130
ProSitePatterns 282 301 20 -
ProSitePatterns 401 410 10 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0721300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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