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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0724500 |
| Transcript ID | LotjaGi1g1v0724500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT1G05310.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O23038|PME8_ARATH Probable pectinesterase 8; TrEMBL-Plants: tr|A2Q4U8|A2Q4U8_MEDTR Pectinesterase; Found in the gene: LotjaGi1g1v0724500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129574472..129581256) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGCATGTTTTCAATGTATATATATTCTGATTTCCCAATACTGTTCCTCATCCTCTTCAACCCCTTTTACATTCTAAT AATCAGCAAATGAGTCTCCAAAGCAATTCCATTTCTCTTTTGGTTCCCCTGGCTGCAATTTTTGCATCTTTGTATCTCAT AAATCCAAATCCACATTTCCTCAACAATTTCACATACTCCAATATCACAACCTTTTCACCTTCATCTATATACTTGGCTC TTCCTTTAACTTACAACTCCGGCAGAGACAATCATTATCATCGTCGCCGACCGCACAATAAACAACCTGATAGTGACAAT GGTGGTTCTGTTTGTGATGATTTTCCACCAGGCATTCCACCTCCAACCACCAATACCACTTCTTATCTTTGTGTTGATCG AAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCTGATTTCAGTGTTAAAAGAAACATAATAT GGATTAATAGTGGCATCTACTTGTAAGTTGGTCATCATCTTTCATCAAAATTTTCTCTATTTTGTTTAAAGTAGACTCTC ATTCTTAATTTTCAATTCTAACAAGATCTTATTCTAAGAGGCTAAATTGACCTATAAAAGAGTTTGCCTAACTTATATTA TGAATAGGGGTGTTCGCGGTTCGGTTTGGACCGATTTTAGGTGAAACTAAAAACCGATCCAATCAAAATTCATTGGTTCG GTTTCGATCGATTGTTAGCAAAAAAAAAATTCCAAAACCGAACCGATCCGATCCGATGATGAACGGTTTGGATCGGTTCG GTTCATCGGTTTCACAATTTTTTTTTGTAAATATCAATTCTACAAATTTAAATATATAGCAAACACATAATTCACAACTT AACAATACATAAAAATGGCAAATCAATAACTCAATCATAACTTAATCACAAATCTATAATCCATAATTCATAATCAACAA CTTAAGTACTTTTTTTTTGAAACAAACTTAAGTACTTAACAATGTAGAAATGCTTAAAGTAGTGTTTAATATTAGTGCTA CTACAAATTAATAATAGAAAATAAAAACATAATAAGTCTAACAAACATAAAAAGTCTAACATAAACAATATTTCTTCAAA ACATTTCTTTAATAAATACATATATATATATATATATTTAAATATTTTATAAATAAATATATATCATCGGTTCATCGGTT TTTAATTTTTCAAACCGTGAACCGGACCAATCTTCATTGGTTTTAATCGGTTTGGATCGTTTTTTAACCGAATAACAAAA AAAACCAATCTAATTGCATTGGTTCGGTTCGGTTCGTCGGTTTCATCAGATCGGATCGATCCGATGAACACCCCTGATTA TGAATGAAAGAAAAAAACACTTAATAAAGCTATTTAATGCAGTTTCTAGTAAATAAGCTCTAACAATAAACTTATCCAAA CATGCTTTAAATCTATTATAGGTGAACTAAAAATGTTTGTATAAAGATTCAAGTAAGAAGTTGGTGCACAATCTACCTAT CTCAAATACAATCTTGGATAAGATTATTTAACCTCATGATATAATTAGATAACTTAAAAAAAAAAAAATAAGTTAAGGAT GTTTATACACATTTCTTTAGTGTTGAGACGAATATGAAAATATATAACTTACACAAATGTCTCAATTTCGAGTCTATATG AGTGAATGCAAGTGCATGAAAAACTTTATAAAGAGAGTGTGAACGTTCGTAACAATTCTACTCGACTCGAACAAAATTGT CTCAGTGGATGATACTTGTAGTTTTAAATAGAAAATATGACACATATTTCAAGTGTTGGAGACAATAAAACATTTAGGCT ATGTTTACATATATGTTAGCATCAGTCCAAATGAATATTAACACTCACATAGAGATAAAAAGTAAACATACCTCCATTTA TAGATTGAGGAGGAAAAATCACTTTCGATTAACTTTATCCAAAGACACACTTACTCATTTTGTTTGGTTGGAGTTAATAG TACTTAAGATTACGCTCCTCAGTAATCATTATATCATTTTTTTTTGGCTTAAAAGCATTTATTGCCCCTGATGTTTCATG TTTGTGCAACTGACAACCCCCATCTATTTTTGTCCATGTTTGTACCCTCAATGTTATAAAGAAGTGTAGCGAGTACCCCT CCGTTAGAGTGACGTTAAAAAGTTAACGGAAGGGGCTGACGTGGCTTTTATTTTTATTTTTTAGACCTGCCACGTGGAAA TAACGTTTAAAATTGGGAAAAAATTGTGAGAGAGATTCGAACCCAAGCTCTGGAAGTGGCAAAACCAACACTAAACCAGT TGAGCTACATAAATAATTGTTATATTTTGCAACACAATTTTATTTATATCATTTAGCCTCCTCTAAACCTATACCCAGAT CTTCTTCCCACTGCTAACCAAAGCTCCAAACCTCATATTCTGGCAACAGACATAACCAAAGTAAACAAGAAGAGCCTAAG TGGGATGTGCAAATTTCTTCTCCCCCTTTCCTTTTCACAAATACCTGAAGCAACCCATAATCAAGCCCGTGTGAAGATCC AAGTTGCGATGTGCAAAGATCTCAGATCATCCTTCCCCCTCTCTCTCTCTCTCTCTCCTTCTCTTCATCTTTCACCCCCA ATTTATGGTAAAACTCCCTTTGAGTGGTTACCGATTGGGTTTCTGGGAAGGGGGTAGGGTGGGTTGCGGTGGTGGTTGGA GGTGAGTGGGTTTCTGGTTTTTGGGGTGGAGGTGGGGTGGGATGCGGTGGTGGCCAGCAGTCGGTGGTGGGGGTTGGGTG ATGGCGGTGGAGCAGAGCGGCGCGAGGGTGAGGCTGTGGATTAGGTTTCCGATATGGGGGTGGGGTTTGAGAAGGTTTGC AGTTGTGGGTTGCGGTAGGGATGAAGTGAGGTTGGGTGTGGGTGGCTGTTTGAGAAGGTTTGCCGTAGGGATGAAGTGAG GTTGGGCTGCGGTGGCTGTTTGAGAAGGTTTGATTTTGCAGAAAAATGAGATCTATGGGTTTGTTTTTGAGTTCGATTTC TGGTTTTGTTTCCAGATCTGAGAAGAGAAGCACAAATTGATGGAGCGTTGGAGGATCACTTCAAGAGCTCAATGAGTGCC TGAGGTTGTTCCCTGGTTCTTCACTGTATCCGCTAGCTGTTCAAAATCAATCCCTTTTGAGTTTTGTAATTTTGGCTTCA CTCTCATGTTAAATTACTGGCTGGTACCATTGTTAAATTACGCCATCGAGAGTGTTCCAGACCTGAAGGCTTACCTAGGT TCCAGGTTCTCCTTGAAGTCTAGCATGAAGCCTCACGAGCTTAAATTCTAGAGGGAAAAGAGTTAGAATCGTTTTTAGAA ATTGGGTTTGAGTCTGTGGGTTTTTGAACGGTGTTTTTGGCTGGGTTGTTGGAATCTCATTTCATGGGGTTGTTGTTTAT TTTGCTTTTTCGTGTTGCTAAGGAGAGGTAGAAGATTGGAGAAGGAGATGGTTTGGACTATGGAGGTTGGTTCTGATTTT GGGTTTAGTTGGCTATGATGAAGAAGAAGAGCAAGATGTTGAAATCTGGGTTTCAATGTGGTTGGGGATGGAGATGGTAA ACACAATGATGAGATAAAGCAGATGATGAAGAATTGAGAAGAACAAGGGGAATAATGATATAAATAAATTTTTGTTCATA ATATAACTAATTGATTGTGCAGCTCAAATGGTAAAGTGTGTGTTTTGCAAGTTTGAGGTCTTGGGTTCGAATCCCTTAAC CATTTTTCCAAGTTTTGAGTTTTATTTAATGACGTGTCAAATAGGAAAAAAAAAAACCACGTCAGCCCCCTCCGTTAGTT TGACGTTTTCTAAACTAACGGAGGGGTACTCGTTACACTGTTCTGTTTCATTGAGGGTACAAACATTGACAAAAATAGAT GGGGGGTGTCATTTACACGAACCTGAAACATCAGGGGCACCAAATGCATTTAAGCCTTTTTTTTTTGTCAGTGAGAAAGT CATGGTGCCAAAAACCAAACCCAACATAACATTCCAAGGACAAGGCTACACTTCAACTGCAATTGCATGGAATGATACTG CAAAGTCTGCAAATGGCACATTTTATAGTGGCTCCGTTCAAGTTTTTGCCCCCAACTTCATTGCTAAGAACATAAGCTTT ATGGTGAAGAGTTGTTAATTAATTATTTATGTGCCTAGATGTGATATCTAATTGCTCAGTGAAGAAAATATAGAAAAATA AGAAACATATATGTTACTTGACACTAACAATTTCATTAACTATTTATAATTACGTAACTTGAAATAGAATTTAGCACCAA TGCCAGCCCCTGGCGTAGAAGGAGCACAAGCAGTAGCTATTAGAATATCAGGAGATCAAGCTGAATTCAGGGGTTGTGGT TTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGA TTTCATATTCGGCAATGCAAGGTCACTCTATGAGGTATCTAATTTTTTCCTTCCCCTTGAATACCTACCTAGATTTTTTG TTAATTCTTCCTTATGAAGTACATCTGAATTAGCTTCCCAATAAAGTTAGGTTTGGTATAAGTTCTAATTGGAGTCAACC TTTGATCCATTGTTGGGTTATGCATTGAAGCTTGAAATTGAAGAATTGACTTGATCGCCTTATAAATATCTCATGATATG ATGGGATAAAGACATTGACCTGACCCGCCCGATATTAGGAACCATGAGAGGTCGACTAATAAAATTGCAAACTCTCTCGG TGTATTTAATGACCGATCGAATTGCAAACTATTACAATACAATTGAATGACATAATTCCAAACTTTCACAATGACACATA ATTACCCAAGCTCAACACAAATCACACTAGTGTTATTGTGGTGAATAAAACTCAACATAACTCTTCATATTTATAATAAT CTCAACTTCTTTCTTTTTCACCCCATTCGAAGTGAGATTTGGATGAGTACGAACTTTCTCTATTTTCTTCTTCTTTATAC CACTTGATGTAAGACTTTGATGAATACTCACTTTGGCCCAATATTAGATAAATATTCAATGATGAAATATACACATTCTG ATAATATGAAATTTGTGATGTCCACACTTCACATGCTCCAATGTCCAATATTGGCGTGAGATAATAATCCTTACATTTGA GCTACATTTTTTTATAGTTTGGACTCGCTCAAATTCTAATAGTTTTCTTTTTTCCTAAACTAGAAAGCAGGCTATGTTTG ACATGTTTAGCTGATAAGCTAGCTGAAAGTTGATAGCTGAAAGCTGAAAAGCTACGTGATTGAAACAAAAGTGTTTGGTA AAACTAGCTGTTAAACAAGCTGAAATTGTAAAAGGACATAAAAGGACATACTTGTATAATAATTATTTTTATATTTAACA TTACTTTATTTTCACATTAATACCTATATGATATTAATATTAAAATTATTATCACTTTAAATATTTTTATTAACTCAAGT TATTTATCATCTTAAAAATATAATATTGAATTTTACTTATTTTTATTAATATAATATTTTTAATACTTATGGTGCGCAGC GGTGTGGCGGGAACTGCATACGTAAGTGTGATGGGAAAATATGTTTAGTGTTTTTATAAATATATAAAGGTAAAGGTGGA ATTTTAATAAAATATTAAGGATAAAAATGAGAATAAATTTAATAAGCTATAAGCTACTTGAGAGAGCTTATAGCTTAAAG CTTTAAGCTACTGAAATAAGCTCATTCACCAAACACTTTTGAAGAGCTTTTAATCTAGTCAAATAAGCTTTAAGTTAGTC AAATAAGCTATAGGCTAGCTGAAATGACATGCCAAACATAACCTTTAGTGTTCGTTTTTAATTACTTAGCAAAATGTGGT GTTTAATTTTCACAAACTCAAAAATTATAGCTAAAATGTAAATTGATGTTGTTGATCTTGGTATTTAAACAGAACTGTCA ACTAGTTTCAATAGCGAATCCAGTACCCCCGGGACAAAGGAGCATAAATGGTGCTGTTACAGCTCATGGAAGAGTTTCCA TGGATGAAAACACAGGATTTGCATTTGTGAACAGCACAATAGGAGGCAACGGCAGAATATGGTTGGGCCGGGCATGGAGG CCGTATTCCCGGGTTGTTTTCGCCTTCACGGCGATGTCAGACATCATTGCCCCGGAAGGTTGGAATGATTTCAATGACCC TACAAGAGATCAGTAAGTACACACACTTAAAACAAGCCAAATTCTTCTTTTATATGAAAAAAAAAATTGTACAATTCTCA TATACCGATTTGAACTAGTGTTAATTGTAGTTAGTTTTGTAATTTGCATATACTGATTTTGGGGATTCATGCAGAACTAT CTTCTATGGAGAATACAATTGCTCTGGACCAGGGGCTACTGCGAATTTGAGGGCATCTTATGTCCGAAGGTTAAACGATA CACAAGCTTTTCCATTCCTCAACTCAAGTTTTATTGATGGTGATCAATGGTTGGAAACATAGCAATAAGCTAAACTTTAC CATGTAAATTGAACTCTTTTTTTCATTCTTACTGTGTAACAACTACACAATTTAACCAAAGGAAAAAGAGATACGAATCA TTGAACTGCCTGTATATTATAATGACAAATTGTTAACAAGTATCATTTGCTCTACTTATTGGGCTTCTTTATTAGTAGCT GTGATACCAAAAAGTCCAATTATACTATGTTTGAAAATTACAATTGCCTATAAAGTCAAAATCAA
CDS sequence (LotjaGi1g1v0724500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCTCCAAAGCAATTCCATTTCTCTTTTGGTTCCCCTGGCTGCAATTTTTGCATCTTTGTATCTCATAAATCCAAA TCCACATTTCCTCAACAATTTCACATACTCCAATATCACAACCTTTTCACCTTCATCTATATACTTGGCTCTTCCTTTAA CTTACAACTCCGGCAGAGACAATCATTATCATCGTCGCCGACCGCACAATAAACAACCTGATAGTGACAATGGTGGTTCT GTTTGTGATGATTTTCCACCAGGCATTCCACCTCCAACCACCAATACCACTTCTTATCTTTGTGTTGATCGAAAAGGGTG TTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCTGATTTCAGTGTTAAAAGAAACATAATATGGATTAATA GTGGCATCTACTTTGAGAAAGTCATGGTGCCAAAAACCAAACCCAACATAACATTCCAAGGACAAGGCTACACTTCAACT GCAATTGCATGGAATGATACTGCAAAGTCTGCAAATGGCACATTTTATAGTGGCTCCGTTCAAGTTTTTGCCCCCAACTT CATTGCTAAGAACATAAGCTTTATGAATTTAGCACCAATGCCAGCCCCTGGCGTAGAAGGAGCACAAGCAGTAGCTATTA GAATATCAGGAGATCAAGCTGAATTCAGGGGTTGTGGTTTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGTCGT CATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGATTTCATATTCGGCAATGCAAGGTCACTCTATGAGAACTGTCA ACTAGTTTCAATAGCGAATCCAGTACCCCCGGGACAAAGGAGCATAAATGGTGCTGTTACAGCTCATGGAAGAGTTTCCA TGGATGAAAACACAGGATTTGCATTTGTGAACAGCACAATAGGAGGCAACGGCAGAATATGGTTGGGCCGGGCATGGAGG CCGTATTCCCGGGTTGTTTTCGCCTTCACGGCGATGTCAGACATCATTGCCCCGGAAGGTTGGAATGATTTCAATGACCC TACAAGAGATCAAACTATCTTCTATGGAGAATACAATTGCTCTGGACCAGGGGCTACTGCGAATTTGAGGGCATCTTATG TCCGAAGGTTAAACGATACACAAGCTTTTCCATTCCTCAACTCAAGTTTTATTGATGGTGATCAATGGTTGGAAACATAG
Protein sequence (LotjaGi1g1v0724500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLQSNSISLLVPLAAIFASLYLINPNPHFLNNFTYSNITTFSPSSIYLALPLTYNSGRDNHYHRRRPHNKQPDSDNGGS VCDDFPPGIPPPTTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRNIIWINSGIYFEKVMVPKTKPNITFQGQGYTST AIAWNDTAKSANGTFYSGSVQVFAPNFIAKNISFMNLAPMPAPGVEGAQAVAIRISGDQAEFRGCGFFGAQDTLHDDKGR HYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQRSINGAVTAHGRVSMDENTGFAFVNSTIGGNGRIWLGRAWR PYSRVVFAFTAMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGATANLRASYVRRLNDTQAFPFLNSSFIDGDQWLET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 399 | 373 | - | – | |
| PANTHER | 38 | 398 | 361 | 1.6E-198 | – | |
| PANTHER | 38 | 398 | 361 | 1.6E-198 | – | |
| MobiDBLite | 60 | 87 | 28 | - | – | |
| SUPERFAMILY | 98 | 397 | 300 | 2.3E-81 | ||
| Gene3D | 98 | 399 | 302 | 2.5E-99 | ||
| Pfam | 102 | 394 | 293 | 2.3E-70 | ||
| ProSitePatterns | 248 | 257 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0724500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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