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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0724800 |
| Transcript ID | LotjaGi1g1v0724800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit Tim22; TAIR: AT2G42210.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I3T3A7|I3T3A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0724800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129600338..129604270) extracted from Lotus japonicus Gifu genome v1.2.
AAAACATATTCTTTTAGTCTTTTATTTATTTTAAATATCACTTTAATTCTCAAGGTGTATTTTTTTAATTTTAGTGCAAA GTGCAAATGATTTGTAATCCATTATAATTATCAAACATATAAAAGAAAAGCACTTTGTTTGAGCAAAGTGATAGTGAGTG ATTTGCAGCTCCCTCCGAACACAACACCACTTTGTTTCTCTTCTCTTGTCGATTTCTACCTCACAGGTACTGTACCAATC AACCCTTTGTTTTTCTCCATCTTCACCATCGCAATTTTGTCTCAATTAGGGTTTTCAATTCGATTCCCCTTTTCACAATC ATCCTCGATCTAAATGTGAATTTCATTATTATTATTATTGTTTCTATTCTTCGTTCTGCGTTACCGGTTTTTCCCCAAAT CCCAATTCAGCTTATTCTTTTTTCTTTTTTTTCTGAATCGATTATCATTGGGTCTCACTGTTCAAGTCTTTCATCGATTT TCACCAAGCTGATAACTTTATTATGCGTTCTGTTTAAAAAATGGATTTTTTTTTTCATTTTATTAAAAACTGAAGGACAA TGTAACTATGTTCAATTCCATGATTTTCTTAAGCATTTTGATATTTAGAAATGTAAACTCTTTTGTTTGGAATTTCAATT TGGAATGCATTATTCCTATCAAAATATTCTAGTTAGTAGAACTGCAAGGTAACATTTGTTTCCCAATTTTCTGTTTGACA GGTAAATGTTTGTAGACATGTATGTAGTGTAGGATTTTGTTATGTGACTTTGTTAATGAGTAGTAATAGTTTGATATTTG ACTTAAGTTCTAACCTTTTAATTCTTTTGGTAATTTTGTTGTTGGTGGGCAGATAAAATCATGGTAAAAATTGACCCTGC GGAGCTTAGGTACTTGGAGAATGATGATTCATCACTCATGAAAACTATTAAGGGTGCAACGACTGGTTTAGTTGCCGGCA CTATCTGGGGTACCGTCGTTGCCACATGGTATGATGTCCCTCGTGTTGAGAGAAATGTTGCTCTCCCGGGGCTAATTAGG ACTTTCAAGATGATGGGCAACCATGGATTGACCTTTGCCGCCATAGGAGGAGTCTACATTGGTGTGGAGCAGTTGGTGCA GAACTTTAGGGGTAAGAGAGATCTGGTGAATGGAGCTGTTGGTGGATTTGTTGCTGGTGCAGCTATTCTGGGTTACAAAG GTATCTCATTCCTCTAATAAATATTTGTCTGGGAATTTTCATGTTTTAATGTTTAGATTTTGAAATATTGTTACTGTTGT TGTTGATAATGGTGAACAAAATTCATTAAGTGCTTTTATGTTTGATCTCATAATCTAGTTCAGAGATGGTAATGGAACAT CGTATGAACAACGACTTGATCCATTTCATTCTGAAAATTAGTGTGCTTGATTGGTGTATTTTTTCTTCTTTTTGCCATGA TTATGCTAGCTAGGTGGCCACTGGTGCTTTTGATGTCTATTAGAGTTGACACTTGTATGATGGGTTACTTGAGTCCAATG TCAGACTCATGGTGAGTCAGCCATGCTGTTACATTGGTTAGGTAATTAAGTAGCTAGACATCTAGGATTCCCAAGTCCCA ACTACAAATGTATTTGTGTATTAAGCAACCTGCAAGAACAGAATTATCTTAGATTCTCTGATTCTCTCTCTGAATATCTT TGCTTGCATTCCTTCAATCGCTCCCCCCCCCCCCACCCACTGAACTCTGTCATTGTCTGCCAAGGAAAGCATTCTATCAT TGCCTTTTTTGTGCTTCTCTGGCTTTGGAGAATTGATCTTGTGGTTGTGTGTGATTTACAGTGTGTACTGGCAGGTGACC AATTCTTCGATCCATATATCCCTTGTGTCCGTGTTATTATTTCAGGAAGTAATTAAAAAGGCTTGTTTATTATATAGCAA TCTCATATTTATATGGATATTTTATGCTCCTTTTCTGTCACTCTCGAGGATTATTATATCTGAAGATTTTTTTGTCCCAA AAGAGAAGCTATGAATTATATGTTCTGAATTTCTTCCATTCAATTGTACTTGGTTCATTGTTTGGTGGCCTGATGTCTAA GTAATAACATGAAATGTAGTTTTTAGGAACTAGGGGGCTATACCCATGTTAGTATGCAGAGGCTCTCTTTTTTTTACTAT TATTATTTCATTTCCTTATGTGACAAATTATAATGCTTCACATAAACGTTGAGAATGGTGATTTTTTTTCTTGCACTAAG CAACATTTTTCTTATTCCATGCATCCAATGATGCTTGTCCCCTAAATTGTTTCTGCTTTTGTGCTTCCTTTTGTTTTTCT AATCACACTGCTGCAAAATTCTTCAATCATTCGTATACAGTTAAACAGCGCAATATTCTTTAAAGATTTACATCGGATAA TTCTAGCTATTGAGGTTGAGGATGGATATGTGCCTGTAATCTCTGAAAGGGTCTACCTTATTAATAGTTGATTCTAACTA CAACTCGTCATTTCCTCTTTGCTGCTAACTTTGTATGGAGTTATTAGTTATTACTAATTCTTAAATGTAGCTAGTGTTGT TTTAGTTACAGTCCTATTTACCCGTGGGGAAGTAGCATATCTTCAAATATCTGTTCTTAATCTTAGCTTTTTAGACTTAA CTAAAAATCCATTTATTTGAAGTTTTGACTTCTTATTAGTTGGTGACTTGGTGCTCTATTTGTTGCTTGTTTACATGAGG GTTTTGCAGTGAAAGGGTAAGACCTTAAGGGGGTAAAGTTTTCATTTTTTTGTTTTCAAATATCTGTTGCTTTAACCATT TCACCATATCGATATTTGAATGAACTCATCTTTTATAACCTTGATTACTAAGTTACCTCTTTAAATCTGATATGAATTAC TAAGATGCTTTTTAATCTAAGTATCTGCCATTGGATAAAATTATGTTTGATAAAATTAAGTTTGTCGAATAAGTTTAAAA AATCATTTTGTGTTTGTGAATCATGCGTAACACTAGTTTAAAACAATGGATGTGTTTGTGAATGATGTGTAAACTTAAGT TTACAAAATGAATGTTGTTCGGATAGAATAAAATGAAATCACCTTGCATCAGACTGTTTTATAACAATCTTTACGTGCTG TGGATTCTATTGTAGGAAGGAGCATCTCAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCAGTTCTTGAT TTCGGAGGTCAGACAATGAAACATGACGATGGGAAGGAGTACGCGGCATACACCACAAAGAAAAGACCCAGCCCTGATGC ATAACTATTAATTTATGCACCTTTATGACCAAGGACATTTCAAGTTGATAGGAGAGAGTGAATCATCACTCTTTGTTGTT TGTTTGAGTTGGGATTACATACTCGGCTATGTTTCCATATTTTCTGTTGTAAGTTGAATTTGCTGAACCAGTTAAACTCC AATAAATGTGCTATTATCTGTTCTTCCACAACCTTGAATTACATAATATTTTGACGGTCTTCCTTGGGAAGTTGACACTG TGAAGCAGAAACATGTGATTAGGCTAGGGATTGTAGCTTTGAGATTCTCATGAACAATTCAAATCATGAATGATATCTTC AGCCTCAGCCCTCAAGGGATGTTAATACTGCACCCAATGACTACAATCACGTGAATTCGCTATTTTACCATTCAAGAATT TGTCAAAATAAAAAAGGGTGAATTGAGAAATTGTTTACCAGCCTCAAGTAGGGCAGTGTTTTTGTTCGTATGCAGAGGCC AGAGGAGGCCAGAGAAATTGTTTGTTTCGCAGTAAAAATGGAGCTTGGCTAACCATTATGCAATTGAGATAAGAAAATGG AAAACAAACAATGTCGATGAAATGTAACATTTCACTTTAAATGATAATAATGATAAAAGAAATGCTAAAATACATTTTTT AAACACATTCTTC
CDS sequence (LotjaGi1g1v0724800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAAAATTGACCCTGCGGAGCTTAGGTACTTGGAGAATGATGATTCATCACTCATGAAAACTATTAAGGGTGCAAC GACTGGTTTAGTTGCCGGCACTATCTGGGGTACCGTCGTTGCCACATGGTATGATGTCCCTCGTGTTGAGAGAAATGTTG CTCTCCCGGGGCTAATTAGGACTTTCAAGATGATGGGCAACCATGGATTGACCTTTGCCGCCATAGGAGGAGTCTACATT GGTGTGGAGCAGTTGGTGCAGAACTTTAGGGGTAAGAGAGATCTGGTGAATGGAGCTGTTGGTGGATTTGTTGCTGGTGC AGCTATTCTGGGTTACAAAGGAAGGAGCATCTCAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCAGTTC TTGATTTCGGAGGTCAGACAATGAAACATGACGATGGGAAGGAGTACGCGGCATACACCACAAAGAAAAGACCCAGCCCT GATGCATAA
Protein sequence (LotjaGi1g1v0724800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKIDPAELRYLENDDSSLMKTIKGATTGLVAGTIWGTVVATWYDVPRVERNVALPGLIRTFKMMGNHGLTFAAIGGVYI GVEQLVQNFRGKRDLVNGAVGGFVAGAAILGYKGRSISTALSAGSALAFTSAVLDFGGQTMKHDDGKEYAAYTTKKRPSP DA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 5 | 160 | 156 | 3.3E-85 | ||
| PANTHER | 5 | 160 | 156 | 3.3E-85 | – | |
| Pfam | 20 | 128 | 109 | 3.9E-15 | – | |
| TMHMM | 25 | 44 | 20 | - | – | |
| Phobius | 26 | 44 | 19 | - | – | |
| Phobius | 45 | 63 | 19 | - | – | |
| TMHMM | 64 | 82 | 19 | - | – | |
| Phobius | 64 | 82 | 19 | - | – | |
| Phobius | 83 | 93 | 11 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| TMHMM | 95 | 112 | 18 | - | – | |
| Phobius | 113 | 117 | 5 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 118 | 137 | 20 | - | – | |
| Phobius | 138 | 162 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TIM22 mitochondrial import inner membrane insertion complex | A multi-subunit complex embedded in the mitochondrial inner membrane that mediates the inner membrane insertion of multi-transmembrane spanning proteins that contain internal targeting elements. In yeast cells, TIM22 is a 300-kDa complex, consisting of four membrane integral subunits, Tim22, Tim54, Tim18 and Sdh3, and a peripheral chaperone complex consisting of the small TIM proteins, Tim9-Tim10-Tim12. | ||
| Biological process | Protein import into mitochondrial inner membrane | The process comprising the import of proteins into the mitochondrion from outside the organelle and their insertion into the mitochondrial inner membrane. The translocase of the outer membrane complex mediates the passage of these proteins across the outer membrane, after which they are guided by either of two inner membrane translocase complexes into their final destination in the inner membrane. |
Expression pattern of LotjaGi1g1v0724800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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