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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0725500 |
| Transcript ID | LotjaGi1g1v0725500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|K7KF19|K7KF19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0725500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129634963..129640546) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGGTTTGTTATGATGTTTTTATTGTACATTATCAAAGCATGACAATATTGGCACACTAGTGATGTCTAGTCCTTTA GCCAAAAACAATGTCCCTCTTAAAGAACTACAAAGTCTAGGCATCGTTATCCTCAGTCGACATATATATGAGCATCAAGT ACCACCCTAAGCTACCATCAGTGCAGCCCTTATAAGAGTTGTCATCGTCGCCACCGGATCTTGCTCCTCGCTGCCTCTTG CTTACTGTCACCGGCTTGCCAGGTCGCTTTTGACAGAGAATTAGGTTGAGCTCAATGCCAATGAGAACTTGTAGTTAATT TACTTGCTAATTGCTATTTATCCATGTGCTTTATCATTCTTCTAATCAAATGCTCTCCTTTTCCCTTTTACAGTTCACTC AAGTTTGGATGATGATTTGATACGTTGGTTTGGGTTGAATCAGACAAGTATCCAGGCTCTACATGATCATTACATATAGA AGAAAGAAATGGTGAGCAATACCATTTACTGCAATATATATTAGTGTTTATATGCTTTTAGAATTGTGTGCTCTTCTACT TGTTTTGATAGGATTCCATTTAATTTTTGGTAAGTAGGAAAAAAGGTTCCATTTAATCTGAACTAATGCTATGCTGATAC ACTATTTCTCTGTTATTAGACTATTATTCATAGCCTTTTCAATGAACTTATGTTTCAACAATATGTTTTATTTATAAGTT TTGTCTATTATGGATTAAGAAAAATCTGGTCCAAATTAAAAGAGTTTTTTTTTTTTTTTGCAAATTCATTTTTACACTTA AGATCATGCTGCAAATAACATATACTAAGTTCTGCAATTTATAACAAGTAATTATAACATGATTTATAGGTTGACCGATT TTTAACATGGTCCACCGTAGTAATGTACCAATCTTTCTGCGTGGGTATCACTCAGAAAAAACATTTTATAAAGACAAAAT CACAAAACTAAAAGCAAGATAACGAAGAGGAGGAGGAGTATGTCCAAGGCGTGGTGAGAAAACATTTTGCGAACACCTTT TTATATGTTACCAATGACCTTGGTCATTAATAAAGTCGTTGGTAAATGGTAACAATGAAAAAATTTAAATTATTTAATAG TCACGCCATCAGTATAACCCAATGATCTCATTCATGTCACCCTTGAGAGGTTATCCATGCCCTACTGATGTTTAGGTGCC CGTAGGAACTTATGATCATAATTTGAAAAGAGGGTCAAGTTATTGACGGCTAAGACTATCGGTAACTTTACATAGCTCAT ATGTTAGAGGGGTGAGGTGGAACGTAAATTTTGGAAAAGAATGAAGTTGAATGTTGTTCTGACAAAGCTCGAGGGGATAA GTGTATATTACTCATATTTAATTTTATGTACTTGTTTAATGCTAATCTCTATAGTTTAAACAAATAATTCCCCGCGTATC CAAAGTAATGCACTGTGAGTCACCTGTGAGTGTCTGTTAGTTTCTATGTAAGGCTAAATGCATGCTTTTAATGTCTCAAG AGTGTATTTAGACAAAATAATTGTCCTGATACATTGAAATATTCTCTATGTACAAGGACATAAGCTATGTCTGCATACAT TATTAACTTTTTCCTCACTGTCTGTTGTTAACTTTTCCTCAATTTGTACGGGCACTAATTTTTAATTATGCCCTTTTTCT TTTCCCTAACCAGGTTGTGGCATATAAAGACATAACAAAGTTCAATTCAAGTGTATTTGCTGAAGAGTCAAGAGTTTAGG TGAAGAAAAGCACGTAGCAGCACCCTTTCATGATGAATGGAACTCCTTGTTGGGAAGTTGTTGGATCAGAACTTCTGAGT TTTGAACCAATCAAATCACCCTACAACTTTGTGACAACAACAGCATCACCTGTTTTTGGTGCAAGTGCTAAAAGCCTTGT GAGTTTTCAAGCTCAAGAACATGATCATGGTCAGAATCAGAACATTGATGTCCCTGGTTGGTGCTATGAGTTTCCCTCTA CACCAATGATGATTTTCCAAGGCTCTGAAGATAACTTCACTAATGTTACCAGTACAGTACAAGATCGACCCTCCTCTCAA TTCACAAGCTCCTTGCACTCGGTTGCTGAGTCTTTCATATCTAGCAGTGAAGATAGCCATTCTTGTTCTGAAAATTATGG TAAAATTGAGCCTGGTATGCCATTATATGATCACTTGCTACAAGAACAATTGAGGAATAATGCTGCCACAGACAAGAGTC CCCTTGAAATTTCCTTTCAGAGAAATCAGGTTCTTACTTTCTCATTATGTAGGTTGTATAGTTTCTAACTCATTTAATGA CATATTTGAATCAACTTAGGACCAATTATGTTACTCAGAAGCTACTCACATAAGCTTCTATCCCCATGATTGATTTTGAT TTTAGAGTCAATTGACATTCATCCTTGGTTTGTCTTCAACAAAAGAAAGACTACATTATGACCTTTTCTACTAGTCTTTC TCCTCTTGCACAAGTTCTTATTTGGCATGTTGATGTTATTTAGGCACTCAATTTAATAGTTGATATAAATACATAACCAA AAACTAGAAATCATTGTTCCACACTTGAAAAAAGTAACTTACAGTTATTTCCCACCCAATTAGTCACCAACATTTGTTGA ATCATCAAAATTGAGGGGCCAACAGAAACCAAAAACTACTCCATGATTGAGAGAGAAGGTTTGGAAATATTGAAACTGTT GAAAATTTGGGTAAACTGTCCTCTAAATTACATGTATGGCTCACTTTCTTATTCTTGATTATAAATTTAAATCCAAAATA CAATATAAAGTAAACCTTTTTGAATAATCTTTTCGACATACAATCAATTTATTCAAGCGTCTTAACTCTTAAGTAGAGTG CTTACTTAAAAATTATTCAACTTATCCCTTTATCAACCATATGTAATCTATGTCTTGTTCATTTGCTTTTTTTGTTGCTG ATGAACTGTAATTCATGACATACTAGTTAGGCTCATGTACAAAGCAAGAAAAGCAGGCTCCTGGACTTTCTAGGAGATCT CCAACAAGTAAAAGAAGAATAAGATGGAGCAAGGATCTGCATGAGCCATTTATGATGATTGTTAATAGCCTTGGTGGTCC AGAAAGTAAGTTAACTTTGTAATATTTTATTAACTAGTTACACTTAAAAAAACTTCCTGTAACTCACCCCAACATGTTTG AATCAAACTTCACATTTCTCATAATCAATTATGGTACTGAGAAGCTGCTCATATAAGTTTTTCCCCAAAAATTATTATGG CTTTAGAATCAACTATAAAAGAATTTTCAAACACGCACTTCATTTATTCATTGGTTAATGGCAGAGGCAAAGCCTAAGGC TATTCTAGAGATGATGAAATCAGATTTGCTGTCCATTTCTCACATAAAAAGTCATTTGCAGGTAAAACTATTTAGAGGGG AGAAATTTATTTGTGTCCTTCTTAAAACTTTGTTGAGCATATAGCCTCTTCTCTATTAATTGGCTCTCTGATATTTTCTC ATATAATTAATTGCCTTGCAGAAATGTAGGTCTACAACTTACATGCACAAGGCTTTGCAGGGTAATTTACTACTTCTGCC AACATTGTCAGTGTGTTTATTTTAGGCTTAAATACTCTGTAGGTCCCTGAAATTGTACCCCGTATCAAAATAAGTCCCTG AAAAAAAAATTTCCGATTCCGGGTCCCTAGAAAAATTTGTTTGATCAAAATAAGTCCCTACGCCGGAGAAGACAGTGGTT GCCTCCTCATTGTTTCCACAAACCATGAAATAACATGTTTAAAACACTCCTAGACCTTCATATATCTGATCTGGGCGAAG AAATCGCAAGAAACAAAGCTAAAACGAAGAAACCGAGAAGCTCCATAAATTCCGGCGAGAAGAAATCAACTTGCGACTGG CCTTTTCTCTTCAACTGTGACGACCCAGCCCACGAGACCACCACCACTGAGTTCCTGAGGACGAGACGAAGCCGGCCCAA CACCCTGGTCGTAGCGCCGCCATGACCGCCGTCGTCAACCACCGTCTTCTCCGGCGTAGGGACTTATTCTGATTAAAAAA ACAATTCCAGGGATCCGGAATCGGAAAAAAAATTTTCAGGGACTTATTTTGATACGAGGTACAATTTCAGGGACCCCTAA AGTATTTAAGCCGTTTATTTTATAATGGTGCATACCTCATAGTCACTTTCTCTTCCATCTCAATTTCACAAACTATTCCT TCTTATCTCTTACTTGGTGTAGATGGATTTGGGACCTGGATTCACTGGAGTCGTTGGTTTTGCACTTAACTTCCGAAAGT TGAACTTCTGGAAGTATAAAAAATACACTTCCGGCCGGAAGTTGAACTTCTAGAAGTATGATATTCCGGAACACACAATT AAAAAAATCACTTCCAAAAGTTGAACTTCCCGAAGTGAAAAATAGCTTTCGAAAGTGCAAAGGTTGATTGTAGTGATTGC TAGCATTAACGGCTACGACTGTAGTAAATCCAAATACGTGGATTCAGAGTATGAATAGATTTTTCATATCATCCCACATA TCATATCTCACATTTCTCACTCTTATATTCTTAGTGATAAGGTATTTGGAGTTTGGACACACTGCAAGTCCAGACACATA TCAATGATATCATGAACACTCCTCAAATGTCCACCTTTCTGATTTTTTGAGTCCTCCTACCAAGCACACCCTGTCTTTTA TCCTAATTTTACTACATATATATATACACCTAACACATCATTTATTTTTTCAATTGCCTCATGCATGATTATTAATGTAC AGCTAAGTGTGTTCACTATATATTTATTCTTCAGTAGTAGTATCATTGTGGATTGTGACATATTACTCCTTTGACTTTCA GAAAGATCTGAGGGAAGACATAGAACAGATGGGGTTACTGAGCTTCAAGTCCAAATGTAATATCAATCCACACTTATGCT GTTACCATGCATCTTTTATTTGCATTTGCAAGTGTTTCATATCTTTCATATACTCACTATTTCCCTACTTCTTGGCAGCA GCCATATGCAAATTGAGGAATCAAGAAAACTGCAACTAGAGGTACGGAGGAGTATTTGCCTACAACTAGAGGTAATGTAT ATAGTCTTTGCTTTGATTTTCATATCAATTGGACAGAATTGTACTTACCCCATACTCTCTTATGTTTATTTTGTCTTTGG GATCAGATGCAACAAAATTTGAAAATGCTTATTGAAGGGCAGAGGAAGGAGCTCAAGGTAATGTTAGATCGCCAAAAGGA AAGGACCTAACTGAAGAAAATCCTTGACACTGAGATGGAAGTGGCTCTCTCCCCTAATGATGGGTCAATTGTTTTGATAA GTTACTACATTTTGCTACCTCTAAGATGAGGCATGAGTGCTCCTCACCTCCATGCAAATGCAATTGCTGCCTTTATCTTT CAATAAGCAATTTTAGAAACTTCAAAATACAATAATGTTTTAGTTTGTATATAAGAGAGCAATTCTAATGCCTTATTTTG AAATTACCTTAATCTTATCTTGAACATTTTAATGACTGAATTGAATGGAAACAATTTTGTTCGC
CDS sequence (LotjaGi1g1v0725500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATGGAACTCCTTGTTGGGAAGTTGTTGGATCAGAACTTCTGAGTTTTGAACCAATCAAATCACCCTACAACTT TGTGACAACAACAGCATCACCTGTTTTTGGTGCAAGTGCTAAAAGCCTTGTGAGTTTTCAAGCTCAAGAACATGATCATG GTCAGAATCAGAACATTGATGTCCCTGGTTGGTGCTATGAGTTTCCCTCTACACCAATGATGATTTTCCAAGGCTCTGAA GATAACTTCACTAATGTTACCAGTACAGTACAAGATCGACCCTCCTCTCAATTCACAAGCTCCTTGCACTCGGTTGCTGA GTCTTTCATATCTAGCAGTGAAGATAGCCATTCTTGTTCTGAAAATTATGGTAAAATTGAGCCTGGTATGCCATTATATG ATCACTTGCTACAAGAACAATTGAGGAATAATGCTGCCACAGACAAGAGTCCCCTTGAAATTTCCTTTCAGAGAAATCAG TTAGGCTCATGTACAAAGCAAGAAAAGCAGGCTCCTGGACTTTCTAGGAGATCTCCAACAAGTAAAAGAAGAATAAGATG GAGCAAGGATCTGCATGAGCCATTTATGATGATTGTTAATAGCCTTGGTGGTCCAGAAAAGGCAAAGCCTAAGGCTATTC TAGAGATGATGAAATCAGATTTGCTGTCCATTTCTCACATAAAAAGTCATTTGCAGAAATGTAGGTCTACAACTTACATG CACAAGGCTTTGCAGGAAAGATCTGAGGGAAGACATAGAACAGATGGGGTTACTGAGCTTCAAGTCCAAATCCATATGCA AATTGAGGAATCAAGAAAACTGCAACTAGAGGTACGGAGGAGTATTTGCCTACAACTAGAGATGCAACAAAATTTGAAAA TGCTTATTGAAGGGCAGAGGAAGGAGCTCAAGGTAATGTTAGATCGCCAAAAGGAAAGGACCTAA
Protein sequence (LotjaGi1g1v0725500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNGTPCWEVVGSELLSFEPIKSPYNFVTTTASPVFGASAKSLVSFQAQEHDHGQNQNIDVPGWCYEFPSTPMMIFQGSE DNFTNVTSTVQDRPSSQFTSSLHSVAESFISSSEDSHSCSENYGKIEPGMPLYDHLLQEQLRNNAATDKSPLEISFQRNQ LGSCTKQEKQAPGLSRRSPTSKRRIRWSKDLHEPFMMIVNSLGGPEKAKPKAILEMMKSDLLSISHIKSHLQKCRSTTYM HKALQERSEGRHRTDGVTELQVQIHMQIEESRKLQLEVRRSICLQLEMQQNLKMLIEGQRKELKVMLDRQKERT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 314 | 306 | 1.7E-111 | – | |
| PANTHER | 9 | 314 | 306 | 1.7E-111 | – | |
| MobiDBLite | 161 | 177 | 17 | - | – | |
| MobiDBLite | 161 | 183 | 23 | - | – | |
| Gene3D | 179 | 240 | 62 | 6.2E-20 | – | |
| SUPERFAMILY | 180 | 236 | 57 | 5.02E-11 | ||
| TIGRFAM | 182 | 236 | 55 | 1.6E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0725500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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