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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31314
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 39 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.029s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0205019.1
n.a. Homeodomain-like superfamily protein isoform 2, partial [Theobroma cacao] gi|508701203|gb|EOX93099.1| chr0 101912082 101918064 -
1 domain prediction
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Lj0g3v0223589.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
1 domain prediction
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Lj0g3v0223589.2
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
1 domain prediction
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Lj0g3v0251039.1
n.a. Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gi|508781804|gb|EOY29060.1| chr0 130163620 130168326 +
1 domain prediction
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Lj1g3v2372410.1
n.a. Two-component response regulator ARR10 [Medicago truncatula] gi|357506085|ref|XP_003623331.1| chr1 27896686 27899248 -
1 domain prediction
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Lj1g3v4048450.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502107507|ref|XP_004493285.1| chr1 47857089 47861308 +
1 domain prediction
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Lj1g3v4048450.2
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Cicer arietinum] gi|502107510|ref|XP_004493286.1| chr1 47857089 47861308 +
1 domain prediction
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Lj1g3v4317480.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357509909|ref|XP_003625243.1| chr1 50739391 50745097 -
1 domain prediction
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Lj1g3v4317480.2
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357509909|ref|XP_003625243.1| chr1 50739391 50745097 -
1 domain prediction
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Lj1g3v4317520.1
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502109125|ref|XP_004493572.1| chr1 50763840 50766550 -
1 domain prediction
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Lj1g3v4317520.2
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502109125|ref|XP_004493572.1| chr1 50763840 50766156 -
1 domain prediction
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Lj1g3v4515910.1
n.a. Two-component response regulator ARR [Medicago truncatula] gi|357510131|ref|XP_003625354.1| chr1 53138045 53144475 -
1 domain prediction
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Lj1g3v4998480.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502113704|ref|XP_004494732.1| chr1 60806217 60810231 +
1 domain prediction
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Lj4g3v2604770.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357518971|ref|XP_003629774.1| chr4 35363106 35369407 +
1 domain prediction
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Lj5g3v0900910.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502122817|ref|XP_004497904.1| chr5 13428619 13432199 +
1 domain prediction
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Lj5g3v0900910.2
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502122817|ref|XP_004497904.1| chr5 13431308 13432199 +
1 domain prediction
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Lj5g3v2241390.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357438793|ref|XP_003589673.1| chr5 32407199 32411612 -
1 domain prediction
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Lj6g3v1694970.1
n.a. PREDICTED: myb family transcription factor APL-like isoform X1 [Cicer arietinum] gi|502079873|ref|XP_004486394.1| chr6 19171604 19176252 -
1 domain prediction
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LotjaGi1g1v0444500.1
n.a. MYB-like transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|K7MTM6|K7MTM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0444500 LjG1.1_chr1 94203973 94206793 -
1 domain prediction
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LotjaGi1g1v0653900.1
n.a. MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 LjG1.1_chr1 121331742 121336469 +
1 domain prediction
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LotjaGi1g1v0653900.2
n.a. MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 LjG1.1_chr1 121331742 121336469 +
1 domain prediction
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LotjaGi1g1v0705400.1
n.a. Myb-like transcription factor family protein; TAIR: AT4G28610.1 phosphate starvation response 1; Swiss-Prot: sp|Q94CL7|PHR1_ARATH Protein PHOSPHATE STARVATION RESPONSE 1; TrEMBL-Plants: tr|G7KXD8|G7KXD8_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi1g1v0705400 LjG1.1_chr1 127386947 127393907 +
1 domain prediction
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LotjaGi1g1v0725500.1
n.a. Myb family transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|K7KF19|K7KF19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0725500 LjG1.1_chr1 129634963 129640546 -
1 domain prediction
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LotjaGi1g1v0725500.2
n.a. Myb family transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|K7KF19|K7KF19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0725500 LjG1.1_chr1 129634995 129640546 -
1 domain prediction
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LotjaGi1g1v0725600.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|V7CVV7|V7CVV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0725600 LjG1.1_chr1 129662236 129665134 -
1 domain prediction
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LotjaGi1g1v0784100.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|I1JRR7|I1JRR7_SOYBN PHR2; Found in the gene: LotjaGi1g1v0784100 LjG1.1_chr1 135696290 135701595 +
1 domain prediction
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LotjaGi1g1v0784100.2
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|I1JRR7|I1JRR7_SOYBN PHR2; Found in the gene: LotjaGi1g1v0784100 LjG1.1_chr1 135696459 135701154 +
1 domain prediction
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LotjaGi3g1v0240400.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A072VAU2|A0A072VAU2_MEDTR Myb-like DNA-binding domain, shaqkyf class protein; Found in the gene: LotjaGi3g1v0240400 LjG1.1_chr3 38907999 38913435 +
1 domain prediction
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LotjaGi3g1v0518900_LC.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|B8ANX9|PHR1_ORYSI Protein PHOSPHATE STARVATION RESPONSE 1; TrEMBL-Plants: tr|I3T4G1|I3T4G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0518900_LC LjG1.1_chr3 93506420 93506972 +
1 domain prediction
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LotjaGi4g1v0003800.1
n.a. Myb family transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A5C966|A5C966_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0003800 LjG1.1_chr4 691131 695949 -
1 domain prediction
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LotjaGi4g1v0378400.1
n.a. MYB-like transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A0B2PFQ4|A0A0B2PFQ4_GLYSO Putative Myb family transcription factor; Found in the gene: LotjaGi4g1v0378400 LjG1.1_chr4 75769463 75775890 +
1 domain prediction
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LotjaGi4g1v0378400.2
n.a. MYB-like transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A0B2PFQ4|A0A0B2PFQ4_GLYSO Putative Myb family transcription factor; Found in the gene: LotjaGi4g1v0378400 LjG1.1_chr4 75769491 75775900 +
1 domain prediction
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LotjaGi5g1v0141600.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|V7BIH1|V7BIH1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0141600 LjG1.1_chr5 35108241 35112394 +
1 domain prediction
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LotjaGi5g1v0209500.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|G7I6T3|G7I6T3_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi5g1v0209500 LjG1.1_chr5 51261850 51266388 -
1 domain prediction
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LotjaGi5g1v0347400.1
n.a. MYB transcription factor-like; TAIR: AT1G14600.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|V7BAB2|V7BAB2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0347400 LjG1.1_chr5 66362030 66366848 -
1 domain prediction
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LotjaGi6g1v0185300.1
n.a. Myb family transcription factor; TAIR: AT2G40260.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A0B2NRI3|A0A0B2NRI3_GLYSO Putative Myb family transcription factor; Found in the gene: LotjaGi6g1v0185300 LjG1.1_chr6 47969949 47973604 +
1 domain prediction
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LotjaGi6g1v0279400.1
n.a. Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400 LjG1.1_chr6 59614627 59620411 -
1 domain prediction
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LotjaGi6g1v0279400.2
n.a. Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400 LjG1.1_chr6 59615046 59617695 -
1 domain prediction
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LotjaGi6g1v0293500.1
n.a. Myb family transcription factor family protein; TAIR: AT4G04605.1 Myb-like DNA-binding domain protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|K7LB46|K7LB46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0293500 LjG1.1_chr6 61127699 61130970 -
1 domain prediction
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