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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0726900 |
| Transcript ID | LotjaGi1g1v0726900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor; TAIR: AT2G42040.1 WRC protein; Swiss-Prot: sp|Q9FJB8|GRF7_ARATH Growth-regulating factor 7; TrEMBL-Plants: tr|A0A1J7G4P0|A0A1J7G4P0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0726900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129781099..129783758) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATAAAAAAAATGTGAATATTTTTTGTATTGTAACGTTTTGTTCCACCCTCCTTACCTCGTCGTACGCTGTCACATT CAGTTTCTCTCTCCTCCACCGGCTACCGTCCCTCCCGGTAGCCACCACCACACGTGCCTCCCTCTGCCACACGTGCCGCC TCTCACCCATACAAGTCCCTTCCTTTCTGTGGTGCAACAAATAAAAGTTAGAGAGAGAGAAACAAACAAAAACTCAGCAA TATATATGGAAGCTAGCAAAACAATGGATAGTGTGAGTGAGTGTTTGTTGATTTTGTCTGTGTGAGAGAGAACAAAGAGA GCATTCATTTTTCTTAGTCTTATCCTTTTTCCTCTTCCTTTATAGATCGGTTTTTTTTTTTTTGTGTGTTGAAGTTTCTT GACCAGACTGAATCTCGTGAGCTTGGGTTGTTGTTGTGGCTGTTTTGCACCGATGAGGATCCGGAAAAGCCAGACGCTTT TCTCCTCTTTCTCTCTCTCAGATCCCCACCTCACCAACCGGTTACCACCGGCGTTGGTGCAACTCGCCGTCGACGCCGCA CCAAAAGCTGAAGAAGCTCCGTTGAGCTTAGATCGCTGTCGTCCGTCTGATCATCCACTCCTACCGAGCAACGGCTGCGA TGATCCCTCCGGTGAAGGTGGGGCACACAGGCCGCAGCAGCGCAACAAGCAAGAACCTTTGGTAAGCCAAAAACGCTATT GTTTATTTTTATTTATTTTTTCTAAAAAATAATTGTTGTTTTGTTTTTGAGAAATTTCATGATGTGGGCTTTTAACAAGT GCACTGCTTTTGTCCAATCTCTGGCGAGTGGTTGGTATCAAATTCCTTTCTGATTTTTTTCAAGAAAAAAATAAAATTAT TTTTCATGATTTTGCAGGAAGAGGTGGAAGATGTTAGAGGGCAACTAGGAAAGGGAGACTCAGCAGGAGAGAAGGGTAAT CATACCAGGTGAGAATCCAAACTGACTATGAAAAATAATCATCATTTTCTCTCATGAAATCTTCCAGTAAAAAAAGGTGA AAACATGGAGACCCATGACTTGATTTCAAGTTTTTAATAAAAAAGAAAAACATTATTATTATTATTTTTTAAAAATTGGA GTGGAAATACTGTTGGGTTTTAAATATGAGATCTTTGTAGAACCAAAGCTCCTTTTCTCTAAGAAATTGGCCAGCTACCA ATATTTGCACTTGAGGTGCACAAATAGCTAGCAAGCACCTATCTAATGGTCCCCAGCTACATTGCATTTTGTTCTTTGCA AAATATTACACCCCTCTTATTTATATTCTCATCTACACTGTAAATTCTATCAATATGTGGTTGTGGGTCTTTCTGGGTTT GTTTTGTTTGTAGGAAAGGATGCATCTTTGGCTCAGAAGTGATGCAAGTTGATAGCTTTCCACCACCAAGTCCTCCTTCA ACTCAAGGTAATAACAAAGATATATATAATAAATGCATATGTATTGAACAGCTTCAAAGTTTTTTGAATGTGTATCACTA TGTGTGTGTTTGCAGATGGGAGATGGTATGATGGAGAGAGATCTATTCCTCTCAAGAAACGGAGAGGGAGCTTTGAGAAT AATAATGCTACTGCTGCTAGTCATGATAATAAGAAGATGAAGACGAAGATGAATAAGAAATGTTCATCATCAGCTACCCA GAATGGTGATGATGTGGACCGTGTTGGTGATGATGTGAGTGCGAGTAATGGTAAGAAGAGGGCGAGGGGGAGTGCAGTGA TGGAAGGTTCGCGGTGCAGCCGTGTGAACGGGAGAGGATGGCGGTGCTGTCAGCCGACACTGGTGGGTTACTCGCTGTGT GAGCATCACTTGGGGAAAGGGAGGCTGAGGAGCATGGCCAGTGTTAGAAACCGTTCTATGAAGAAGGAGGTGCAAGACTT GCTGCCTCAACCGTCTTCTTGTGGTGGTGATAATTCGTCTTCTTCTTCTTCTCTTGAAAGGAAAAACAAGTCTGGTGGTG CTGATTATCCTCTTGGGAAGAGTGAGAAGAAGGCGGCGGTGGCAGTGACAAAGAAGAGAATGAAGCTGGGAATGGTGAAA GCAAGGTCCATGAGCAGCTTGATGGGACAAACAAACACCCAGGTTGTTGTTGCAGATGAGAATAACAAGTAAGATGAATA CAAATGCAAAAACTTTTGTTATTTCATGTGTTTCATGGAGAGAAAAATCTTAATACTAGAAACTGTGTCTTATACTTTGT GCTGATGATATTGCATCCTAAATCAACTTAATTAGCACAGGTGCTTTATTTCATGTTTCATATTTTTGTGATGTGTGTTT AATTTCCTTTCATCTCTCACTAGTTAGAGATGGGAATATTATTGAAGTCTTGGATAGTACTGGACACCTTCAGATGATCT GTGGAATGTGGAATGCTATATCAACATGCACTTTAGTTGATATATATATATATATATATATTTTTGACGGGCTAGTTGAT TTGTTAAGTACTATTGGATTGTTCATGATAATTGTGTGTGTCCTTTGAGGGTTTGACCATGGAAACAACCGCTCTCAACT TTATCGTGTGAAAATTTGTTACATATGAATTTGGATACTAAATTTCAAAGTAATTCGAGTTAATGATTAACTGGATATGT TTTGATGATCATGTCACCTA
CDS sequence (LotjaGi1g1v0726900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATCCGGAAAAGCCAGACGCTTTTCTCCTCTTTCTCTCTCTCAGATCCCCACCTCACCAACCGGTTACCACCGGC GTTGGTGCAACTCGCCGTCGACGCCGCACCAAAAGCTGAAGAAGCTCCGTTGAGCTTAGATCGCTGTCGTCCGTCTGATC ATCCACTCCTACCGAGCAACGGCTGCGATGATCCCTCCGGTGAAGGTGGGGCACACAGGCCGCAGCAGCGCAACAAGCAA GAACCTTTGGAAGAGGTGGAAGATGTTAGAGGGCAACTAGGAAAGGGAGACTCAGCAGGAGAGAAGGGTAATCATACCAG GAAAGGATGCATCTTTGGCTCAGAAGTGATGCAAGTTGATAGCTTTCCACCACCAAGTCCTCCTTCAACTCAAGATGGGA GATGGTATGATGGAGAGAGATCTATTCCTCTCAAGAAACGGAGAGGGAGCTTTGAGAATAATAATGCTACTGCTGCTAGT CATGATAATAAGAAGATGAAGACGAAGATGAATAAGAAATGTTCATCATCAGCTACCCAGAATGGTGATGATGTGGACCG TGTTGGTGATGATGTGAGTGCGAGTAATGGTAAGAAGAGGGCGAGGGGGAGTGCAGTGATGGAAGGTTCGCGGTGCAGCC GTGTGAACGGGAGAGGATGGCGGTGCTGTCAGCCGACACTGGTGGGTTACTCGCTGTGTGAGCATCACTTGGGGAAAGGG AGGCTGAGGAGCATGGCCAGTGTTAGAAACCGTTCTATGAAGAAGGAGGTGCAAGACTTGCTGCCTCAACCGTCTTCTTG TGGTGGTGATAATTCGTCTTCTTCTTCTTCTCTTGAAAGGAAAAACAAGTCTGGTGGTGCTGATTATCCTCTTGGGAAGA GTGAGAAGAAGGCGGCGGTGGCAGTGACAAAGAAGAGAATGAAGCTGGGAATGGTGAAAGCAAGGTCCATGAGCAGCTTG ATGGGACAAACAAACACCCAGGTTGTTGTTGCAGATGAGAATAACAAGTAA
Protein sequence (LotjaGi1g1v0726900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIRKSQTLFSSFSLSDPHLTNRLPPALVQLAVDAAPKAEEAPLSLDRCRPSDHPLLPSNGCDDPSGEGGAHRPQQRNKQ EPLEEVEDVRGQLGKGDSAGEKGNHTRKGCIFGSEVMQVDSFPPPSPPSTQDGRWYDGERSIPLKKRRGSFENNNATAAS HDNKKMKTKMNKKCSSSATQNGDDVDRVGDDVSASNGKKRARGSAVMEGSRCSRVNGRGWRCCQPTLVGYSLCEHHLGKG RLRSMASVRNRSMKKEVQDLLPQPSSCGGDNSSSSSSLERKNKSGGADYPLGKSEKKAAVAVTKKRMKLGMVKARSMSSL MGQTNTQVVVADENNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| MobiDBLite | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Phobius | 8 | 15 | 8 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 336 | 313 | - | – | |
| MobiDBLite | 38 | 137 | 100 | - | – | |
| PANTHER | 59 | 334 | 276 | 8.0E-77 | ||
| PANTHER | 59 | 334 | 276 | 8.0E-77 | – | |
| MobiDBLite | 74 | 104 | 31 | - | – | |
| MobiDBLite | 174 | 202 | 29 | - | – | |
| ProSiteProfiles | 206 | 250 | 45 | 20.99 | ||
| Pfam | 208 | 248 | 41 | 3.1E-15 | ||
| MobiDBLite | 257 | 296 | 40 | - | – | |
| MobiDBLite | 264 | 282 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. |
Expression pattern of LotjaGi1g1v0726900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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